Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000632

Physical Location & Seq

Genomic Coordinates Forward (+)

80307098 .. 80308481

Gene Structure 1384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00142150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

ATGGCGCATTACCAGAGCGGACACCCCACAGAGTCTCCCACAGACGAGTACGGCAACCCCGTTACCCGCACTGACGAGTATGGCAACCCGATTCACCACGGCGTGACCGGAGCAACCACCGGGCACGGCATTCATGACACCACTCACGTCACCGGAACCGGCTACGGAACTCACGGCACCGGTACTGCCCCCACTGGTTTCGTTGGGGCAGCTCCTGGTGGTCACGGCGTCACTACTCTTCCGCGTTCCGGCAGCTCCAGCTCCTCTGAGGATGATGGTTATGGTGGAAGGAGGAAGAAGGGTTTGAAGGAGAAGATCAAGGAGAAGCTGCCCGGTGGCACACGCCGGTCCGATGACACCTACGGTACAACCCCGACTACCACACCTTCTGGCGGACAGCACCAGGATAGGGGAGTGATGGACAAAATCAAAGAGAAGATCCCAGGTGGTCACAAAGACGATCCCTACAGTACTACTCATACCAGTACTACACCGGGTTACGGCGTGGCCGGAGAGCACCGTGAGAATAAGGGAGTGGTGGACCAGATGAAAGAGAAGCTACCAGGCGGTCACAAGAATGATCCCTACAGTACTACACATAGCACTACTACACCGGGTTACGGCGGGGCCGGAGAGCACCGTGAGAATAAGGGAGTGGTGGACAAGATCAAAGAGAAGCTACCAGGCGGTCACAAGAATGATCCCTACAGTACTACTCATAGCACTACTACACCGGGTTACGGCGTGGCCGGAGAGCACCATGAGAATAAGGGAGTGGTGGACCAGATGAAAGAGAAGCTACCAGGCGGTCACAAGAATGATCCCTACAGTACTACACATAGCACTACTACACCGGGTTACGGCGTGACCGGAGAGCACCGTGAGAATAAGGGAGTGGTGGACCAGATCAAAGAGAAGCTACCAGGCGGTCACAAGAATGATCCCTACAGTACTACTCATAGCACTACTACAGGCGGTCACAAGGAGGATCCCTACGCTACTACACCGGGTTACGGCATGGGTTACGGCAGGGCCGGAGAGCACCGTGAGAGCACTACTACACCGGGTTCCGGCGTGGCCGGAGAGCACCGTGAGAATAAGGGAGTGGTTGACAAGATCAAAGAGAAGCTACCAGGTGGTCGCAAGGATGATCCGTACGGTACTACTCACACCACCACGACTGCTGCACCGGCTTTCGGTACTGCCACAGGGGAGCACCATGAGAAGAAGGGAATGATGGACAAGATCAAGGAGAAGCTTCCCGGTGGACACAGCACCACTCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001786 GO:0003674 GO:0005488 GO:0005507 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0008289 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0009961 GO:0010033 GO:0010035 GO:0010243 GO:0012506 GO:0016020 GO:0016151 GO:0031090 GO:0031982 GO:0033993 GO:0035091 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043200 GO:0043226 GO:0043227 GO:0044422 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0070300 GO:0072341 GO:0097305 GO:1901611 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dehydrin

Protein Analysis

428

Amino Acids

45.23

Weight (kDa)

7.93

Isoelectric Point (pI)

17.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dehydrin	PF00257	14 - 151	4.6e-27	Dehydrin
Dehydrin	PF00257	131 - 191	3e-11	Dehydrin
Dehydrin	PF00257	168 - 231	2.1e-12	Dehydrin
Dehydrin	PF00257	206 - 271	1.2e-13	Dehydrin
Dehydrin	PF00257	358 - 424	1.6e-16	Dehydrin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000632)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12550 FvH4_1g12560 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582
malus_domestica	MD02G1139700.v1.1 MD02G1139800.v1.1 MD02G1139900.v1.1 MD02G1140000.v1.1 MD02G1140100.v1.1 MD15G1253900.v1.1
prunus_persica	Prupe.7G161000_v2.0.a1 Prupe.7G161100_v2.0.a1 Prupe.7G161200_v2.0.a1
pyrus_communis	pycom02g11040 pycom02g11050 pycom02g11060 pycom15g22290
rosa_chinensis	RchiOBHm_Chr2g0100511 RchiOBHm_Chr2g0100521 RchiOBHm_Chr2g0100551
rosa_laevigata	RLG00000016977 RLG00000016979 RLG00000016980 RLG00000016984
rosa_multiflora	Rmu_co8033534.1_g000001 Rmu_co8351081.1_g000001 Rmu_sc0000528.1_g000012 Rmu_sc0000528.1_g000015 Rmu_sc0000528.1_g000020 Rmu_sc0000528.1_g000022 Rmu_sc0005122.1_g000019 Rmu_sc0006445.1_g000015 Rmu_sc0022708.1_g000001 Rmu_sc0022708.1_g000004 Rmu_sc0023932.1_g000001 Rmu_sc0026349.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142150 Rroxscaffold_2G00142160 Rroxscaffold_2G00142180
rosa_rugosa	Rorug02G0088800 Rorug02G0088900 Rorug02G0089000 Rorug02G0089200 Rorug02G0089400
rosa_samantha	Rh1BG215800 Rh1DG241900 Rh2AG138400 Rh2AG138500 Rh2BG141400 Rh2BG141600 Rh2BG141700 Rh2BG141900 Rh2CG143600 Rh2CG143800 Rh2CG144000 Rh2CG144200 Rh2DG143200 Rh2DG143300 Rh2DG143400 Rh2DG143600
rosa_wichuraiana	Rw2G010820 Rw2G010830 Rw2G010840 Rw2G010850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	176
AccBSI	CCGCTC	1 cut(s)	18
AccII	CGCG	1 cut(s)	244
AclWI	GGATC	9 cut(s)	433, 455, 575, 695, 815, 935, 983, 996, 1145
AcoI	YGGCCR	3 cut(s)	507, 747, 1077
AcyI	GRCGYC	1 cut(s)	228
AdeI	CACNNNGTG	1 cut(s)	103
AgeI	ACCGGT	1 cut(s)	179
AgsI	TTSAA	1 cut(s)	307
AjiI	CACGTC	1 cut(s)	148
AjnI	CCWGG	8 cut(s)	214, 402, 442, 562, 682, 802, 922, 1132
Alw21I	GWGCWC	8 cut(s)	519, 639, 759, 879, 1044, 1055, 1089, 1218
Alw26I	GTCTC	1 cut(s)	39
AlwI	GGATC	9 cut(s)	433, 455, 575, 695, 815, 935, 983, 996, 1145
AlwNI	CAGNNNCTG	1 cut(s)	215
AoxI	GGCC	5 cut(s)	507, 627, 747, 1032, 1077
ApeKI	GCWGC	4 cut(s)	209, 252, 328, 1184
AsiGI	ACCGGT	1 cut(s)	179
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	6 cut(s)	348, 541, 627, 781, 901, 1032
AsuC2I	CCSGG	9 cut(s)	121, 333, 495, 615, 735, 855, 1008, 1065, 1263
AsuHPI	GGTGA	2 cut(s)	86, 142
AvaII	GGWCC	4 cut(s)	348, 541, 781, 901
BaeGI	GKGCMC	1 cut(s)	126
BamHI	GGATCC	1 cut(s)	988
BanI	GGYRCC	1 cut(s)	176
Bbv12I	GWGCWC	8 cut(s)	519, 639, 759, 879, 1044, 1055, 1089, 1218
BbvI	GCAGC	4 cut(s)	221, 264, 315, 1171
BccI	CCATC	3 cut(s)	269, 412, 1231
BciT130I	CCWGG	8 cut(s)	216, 404, 444, 564, 684, 804, 924, 1134
BcnI	CCSGG	9 cut(s)	121, 333, 495, 615, 735, 855, 1008, 1065, 1263
BcoDI	GTCTC	1 cut(s)	39
BfmI	CTRYAG	6 cut(s)	466, 586, 706, 826, 946, 969
BisI	GCNGC	4 cut(s)	210, 253, 329, 1185
BlsI	GCNGC	4 cut(s)	211, 254, 330, 1186
BmcAI	AGTACT	6 cut(s)	472, 487, 592, 712, 832, 952
Bme18I	GGWCC	4 cut(s)	348, 541, 781, 901
BmgBI	CACGTC	1 cut(s)	148
BmgT120I	GGNCC	6 cut(s)	348, 541, 627, 781, 901, 1032
BmiI	GGNNCC	5 cut(s)	157, 178, 628, 990, 1069
BpmI	CTGGAG	1 cut(s)	241
BpuMI	CCSGG	9 cut(s)	121, 333, 495, 615, 735, 855, 1008, 1065, 1263
BsaHI	GRCGYC	1 cut(s)	228
BsaJI	CCNNGG	2 cut(s)	97, 442
BsaWI	WCCGGW	4 cut(s)	107, 152, 179, 869
BsaXI	ACNNNNNCTCC	2 cut(s)	19, 49
Bse118I	RCCGGY	4 cut(s)	158, 179, 345, 1189
Bse1I	ACTGG	2 cut(s)	199, 483
BseBI	CCWGG	8 cut(s)	216, 404, 444, 564, 684, 804, 924, 1134
BseDI	CCNNGG	2 cut(s)	97, 442
BseGI	GGATG	2 cut(s)	277, 1153
BseMII	CTCAG	1 cut(s)	258
BseNI	ACTGG	2 cut(s)	199, 483
BseRI	GAGGAG	1 cut(s)	253
BseSI	GKGCMC	1 cut(s)	126
BseXI	GCAGC	4 cut(s)	221, 264, 315, 1171
BsgI	GTGCAG	1 cut(s)	1170
Bsh1236I	CGCG	1 cut(s)	244
BshFI	GGCC	5 cut(s)	509, 629, 749, 1034, 1079
BshNI	GGYRCC	1 cut(s)	176
BshTI	ACCGGT	1 cut(s)	179
BsiHKAI	GWGCWC	8 cut(s)	519, 639, 759, 879, 1044, 1055, 1089, 1218
BsiWI	CGTACG	1 cut(s)	1155
BsmAI	GTCTC	1 cut(s)	39
BsmI	GAATGC	1 cut(s)	129
BsnI	GGCC	5 cut(s)	509, 629, 749, 1034, 1079
Bsp1286I	GDGCHC	9 cut(s)	126, 519, 639, 759, 879, 1044, 1055, 1089, 1218
BspANI	GGCC	5 cut(s)	509, 629, 749, 1034, 1079
BspCNI	CTCAG	1 cut(s)	259
BspFNI	CGCG	1 cut(s)	244
BspHI	TCATGA	1 cut(s)	133
BspLI	GGNNCC	5 cut(s)	157, 178, 628, 990, 1069
BspPI	GGATC	9 cut(s)	433, 455, 575, 695, 815, 935, 983, 996, 1145
BspT107I	GGYRCC	1 cut(s)	176
BsrBI	CCGCTC	1 cut(s)	18
BsrFI	RCCGGY	4 cut(s)	158, 179, 345, 1189
BsrI	ACTGG	2 cut(s)	199, 483
BssAI	RCCGGY	4 cut(s)	158, 179, 345, 1189
BssECI	CCNNGG	2 cut(s)	97, 442
BssNI	GRCGYC	1 cut(s)	228
Bst2UI	CCWGG	8 cut(s)	216, 404, 444, 564, 684, 804, 924, 1134
Bst6I	CTCTTC	1 cut(s)	243
BstACI	GRCGYC	1 cut(s)	228
BstDEI	CTNAG	1 cut(s)	267
BstDSI	CCRYGG	1 cut(s)	97
BstF5I	GGATG	2 cut(s)	277, 1153
BstFNI	CGCG	1 cut(s)	244
BstHHI	GCGC	1 cut(s)	7
BstMAI	GTCTC	1 cut(s)	39
BstMWI	GCNNNNNNNGC	2 cut(s)	258, 1190
BstNI	CCWGG	8 cut(s)	216, 404, 444, 564, 684, 804, 924, 1134
BstSFI	CTRYAG	6 cut(s)	466, 586, 706, 826, 946, 969
BstSLI	GKGCMC	1 cut(s)	126
BstUI	CGCG	1 cut(s)	244
BstV1I	GCAGC	4 cut(s)	221, 264, 315, 1171
BstX2I	RGATCY	2 cut(s)	438, 988
BstYI	RGATCY	2 cut(s)	438, 988
BsuRI	GGCC	5 cut(s)	509, 629, 749, 1034, 1079
BtgI	CCRYGG	1 cut(s)	97
BtrI	CACGTC	1 cut(s)	148
BtsCI	GGATG	2 cut(s)	277, 1153
BtsIMutI	CAGTG	2 cut(s)	69, 192
CaiI	CAGNNNCTG	1 cut(s)	215
CciI	TCATGA	1 cut(s)	133
CfoI	GCGC	1 cut(s)	7
Cfr10I	RCCGGY	4 cut(s)	158, 179, 345, 1189
Cfr13I	GGNCC	6 cut(s)	348, 541, 627, 781, 901, 1032
CpoI	CGGWCCG	1 cut(s)	348
CseI	GACGC	1 cut(s)	217
CsiI	ACCWGGT	1 cut(s)	1132
CspAI	ACCGGT	1 cut(s)	179
CspI	CGGWCCG	1 cut(s)	348
CviAII	CATG	4 cut(s)	134, 761, 1018, 1220
DdeI	CTNAG	1 cut(s)	267
DraIII	CACNNNGTG	1 cut(s)	103
EaeI	YGGCCR	3 cut(s)	507, 747, 1077
Eam1104I	CTCTTC	1 cut(s)	243
EarI	CTCTTC	1 cut(s)	243
EciI	GGCGGA	1 cut(s)	408
Eco47I	GGWCC	4 cut(s)	348, 541, 781, 901
EcoRII	CCWGG	8 cut(s)	214, 402, 442, 562, 682, 802, 922, 1132
FaeI	CATG	4 cut(s)	137, 764, 1021, 1223
FatI	CATG	4 cut(s)	133, 760, 1017, 1219
FauI	CCCGC	2 cut(s)	74, 617
Fnu4HI	GCNGC	4 cut(s)	210, 253, 329, 1185
FokI	GGATG	2 cut(s)	284, 1160
Fsp4HI	GCNGC	4 cut(s)	210, 253, 329, 1185
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	4 cut(s)	210, 253, 329, 1185
GsuI	CTGGAG	1 cut(s)	241
HaeIII	GGCC	5 cut(s)	509, 629, 749, 1034, 1079
HgaI	GACGC	1 cut(s)	217
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	1 cut(s)	228
Hin1II	CATG	4 cut(s)	137, 764, 1021, 1223
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HincII	GTYRAC	1 cut(s)	1111
HindII	GTYRAC	1 cut(s)	1111
HindIII	AAGCTT	1 cut(s)	1256
HinfI	GANTC	2 cut(s)	32, 91
HphI	GGTGA	2 cut(s)	86, 142
Hpy166II	GTNNAC	6 cut(s)	541, 661, 781, 901, 1111, 1268
Hpy188I	TCNGA	2 cut(s)	268, 352
Hpy188III	TCNNGA	1 cut(s)	134
Hpy8I	GTNNAC	6 cut(s)	541, 661, 781, 901, 1111, 1268
HpyAV	CCTTC	5 cut(s)	282, 292, 301, 396, 1222
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	1 cut(s)	1187
HpyF10VI	GCNNNNNNNGC	2 cut(s)	258, 1190
HpyF3I	CTNAG	1 cut(s)	267
HpySE526I	ACGT	1 cut(s)	147
Hsp92I	GRCGYC	1 cut(s)	228
Hsp92II	CATG	4 cut(s)	137, 764, 1021, 1223
HspAI	GCGC	1 cut(s)	5
LmnI	GCTCC	5 cut(s)	110, 217, 260, 266, 1213
Lsp1109I	GCAGC	4 cut(s)	221, 264, 315, 1171
MabI	ACCWGGT	1 cut(s)	1132
MaeII	ACGT	1 cut(s)	147
MbiI	CCGCTC	1 cut(s)	18
MboII	GAAGA	5 cut(s)	230, 307, 325, 448, 1237
MflI	RGATCY	2 cut(s)	438, 988
MhlI	GDGCHC	9 cut(s)	126, 519, 639, 759, 879, 1044, 1055, 1089, 1218
MlyI	GAGTC	1 cut(s)	41
MnlI	CCTC	4 cut(s)	262, 274, 285, 979
MslI	CAYNNNNRTG	4 cut(s)	576, 696, 816, 936
Mva1269I	GAATGC	1 cut(s)	129
MvaI	CCWGG	8 cut(s)	216, 404, 444, 564, 684, 804, 924, 1134
MvnI	CGCG	1 cut(s)	244
MwoI	GCNNNNNNNGC	2 cut(s)	258, 1190
NciI	CCSGG	9 cut(s)	121, 333, 495, 615, 735, 855, 1008, 1065, 1263
NlaIII	CATG	4 cut(s)	137, 764, 1021, 1223
NlaIV	GGNNCC	5 cut(s)	157, 178, 628, 990, 1069
PagI	TCATGA	1 cut(s)	133
PcsI	WCGNNNNNNNCGW	1 cut(s)	57
PctI	GAATGC	1 cut(s)	129
PfeI	GAWTC	1 cut(s)	91
Pfl23II	CGTACG	1 cut(s)	1155
PinAI	ACCGGT	1 cut(s)	179
PkrI	GCNGC	4 cut(s)	211, 254, 330, 1186
PleI	GAGTC	1 cut(s)	40
PpsI	GAGTC	1 cut(s)	40
Psp6I	CCWGG	8 cut(s)	214, 402, 442, 562, 682, 802, 922, 1132
PspGI	CCWGG	8 cut(s)	214, 402, 442, 562, 682, 802, 922, 1132
PspLI	CGTACG	1 cut(s)	1155
PspN4I	GGNNCC	5 cut(s)	157, 178, 628, 990, 1069
PspPI	GGNCC	6 cut(s)	348, 541, 627, 781, 901, 1032
PstNI	CAGNNNCTG	1 cut(s)	215
PsuI	RGATCY	2 cut(s)	438, 988
RseI	CAYNNNNRTG	4 cut(s)	576, 696, 816, 936
Rsr2I	CGGWCCG	1 cut(s)	348
RsrII	CGGWCCG	1 cut(s)	348
SatI	GCNGC	4 cut(s)	210, 253, 329, 1185
Sau96I	GGNCC	6 cut(s)	348, 541, 627, 781, 901, 1032
ScaI	AGTACT	6 cut(s)	472, 487, 592, 712, 832, 952
SchI	GAGTC	1 cut(s)	41
SduI	GDGCHC	9 cut(s)	126, 519, 639, 759, 879, 1044, 1055, 1089, 1218
SexAI	ACCWGGT	1 cut(s)	1132
SfcI	CTRYAG	6 cut(s)	466, 586, 706, 826, 946, 969
SinI	GGWCC	4 cut(s)	348, 541, 781, 901
SmiMI	CAYNNNNRTG	4 cut(s)	576, 696, 816, 936
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	1 cut(s)	1282
TatI	WGTACW	6 cut(s)	470, 485, 590, 710, 830, 950
TfiI	GAWTC	1 cut(s)	91
TscAI	CASTG	2 cut(s)	76, 199
TseI	GCWGC	4 cut(s)	209, 252, 328, 1184
TspDTI	ATGAA	3 cut(s)	122, 563, 803
TspGWI	ACGGA	2 cut(s)	180, 1143
TspRI	CASTG	2 cut(s)	76, 199
VpaK11BI	GGWCC	4 cut(s)	348, 541, 781, 901
ZrmI	AGTACT	6 cut(s)	472, 487, 592, 712, 832, 952

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.