Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0000632

Physical Location & Seq

Genomic Coordinates Reverse (-)

10953012 .. 10953539

Gene Structure 528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G010830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGCGCATTACCAGAGCGAGTACGGCAGAGACAAGACCACCGACGAGTTCGGAAACCCGATCCGCCGGACTGAGGACCCTGTTCACCATGGTGTAACCGAAGCAGCCACCGGGTACGGCACTCATGACACTAGAACAGGGTACGGAACTCATGACACCACCGGAACTGGGTACGGGACTCATAGCACAACTGGTACAGGCTACGGCTTCACCCGCTCTGACAGCTCAAGCTCTTCTGAGGATGATGGGTACGGCGGGAGGAGGAAGAAGAAGGGCTTGGAGAAGATAAAGGAGAAGCTGCCAGGTGGCACACACAGGCCCGAGGACCGTTACGGTGCGACTACTACACCTTACGGTGGACAGCACCAGGAGAAGGGAATGATGGACAAGATCAAAGAGAAGCTTCCCGGCCACCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001786 GO:0003674 GO:0005488 GO:0005507 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0008289 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0009961 GO:0010033 GO:0010035 GO:0010243 GO:0012506 GO:0016020 GO:0016151 GO:0031090 GO:0031982 GO:0033993 GO:0035091 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043200 GO:0043226 GO:0043227 GO:0044422 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0070300 GO:0072341 GO:0097305 GO:1901611 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dehydrin

Protein Analysis

139

Amino Acids

15.24

Weight (kDa)

7.17

Isoelectric Point (pI)

27.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dehydrin	PF00257	13 - 139	6.9e-26	Dehydrin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000632)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12550 FvH4_1g12560 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582
malus_domestica	MD02G1139700.v1.1 MD02G1139800.v1.1 MD02G1139900.v1.1 MD02G1140000.v1.1 MD02G1140100.v1.1 MD15G1253900.v1.1
prunus_persica	Prupe.7G161000_v2.0.a1 Prupe.7G161100_v2.0.a1 Prupe.7G161200_v2.0.a1
pyrus_communis	pycom02g11040 pycom02g11050 pycom02g11060 pycom15g22290
rosa_chinensis	RchiOBHm_Chr2g0100511 RchiOBHm_Chr2g0100521 RchiOBHm_Chr2g0100551
rosa_laevigata	RLG00000016977 RLG00000016979 RLG00000016980 RLG00000016984
rosa_multiflora	Rmu_co8033534.1_g000001 Rmu_co8351081.1_g000001 Rmu_sc0000528.1_g000012 Rmu_sc0000528.1_g000015 Rmu_sc0000528.1_g000020 Rmu_sc0000528.1_g000022 Rmu_sc0005122.1_g000019 Rmu_sc0006445.1_g000015 Rmu_sc0022708.1_g000001 Rmu_sc0022708.1_g000004 Rmu_sc0023932.1_g000001 Rmu_sc0026349.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142150 Rroxscaffold_2G00142160 Rroxscaffold_2G00142180
rosa_rugosa	Rorug02G0088800 Rorug02G0088900 Rorug02G0089000 Rorug02G0089200 Rorug02G0089400
rosa_samantha	Rh1BG215800 Rh1DG241900 Rh2AG138400 Rh2AG138500 Rh2BG141400 Rh2BG141600 Rh2BG141700 Rh2BG141900 Rh2CG143600 Rh2CG143800 Rh2CG144000 Rh2CG144200 Rh2DG143200 Rh2DG143300 Rh2DG143400 Rh2DG143600
rosa_wichuraiana	Rw2G010820 Rw2G010830 Rw2G010840 Rw2G010850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	216
AciI	CCGC	3 cut(s)	64, 214, 255
AclWI	GGATC	1 cut(s)	55
AcoI	YGGCCR	1 cut(s)	409
AfaI	GTAC	6 cut(s)	23, 116, 143, 173, 196, 251
AfiI	CCNNNNNNNGG	4 cut(s)	73, 168, 356, 373
AjnI	CCWGG	2 cut(s)	301, 366
AjuI	GAANNNNNNNTTGG	2 cut(s)	260, 292
AleI	CACNNNNGTG	1 cut(s)	90
AluBI	AGCT	4 cut(s)	225, 231, 298, 403
AluI	AGCT	4 cut(s)	225, 231, 298, 403
Alw26I	GTCTC	1 cut(s)	24
AlwI	GGATC	1 cut(s)	55
Ama87I	CYCGRG	1 cut(s)	320
AoxI	GGCC	2 cut(s)	317, 409
ApeKI	GCWGC	2 cut(s)	104, 298
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	3 cut(s)	76, 318, 325
AsuC2I	CCSGG	2 cut(s)	112, 408
AsuHPI	GGTGA	2 cut(s)	77, 202
AvaI	CYCGRG	1 cut(s)	320
AvaII	GGWCC	2 cut(s)	76, 325
BbvI	GCAGC	2 cut(s)	116, 285
BccI	CCATC	2 cut(s)	239, 376
BceAI	ACGGC	4 cut(s)	40, 133, 220, 268
BciT130I	CCWGG	2 cut(s)	303, 368
BcnI	CCSGG	2 cut(s)	112, 408
BcoDI	GTCTC	1 cut(s)	24
BfaI	CTAG	1 cut(s)	132
BisI	GCNGC	2 cut(s)	105, 299
BlsI	GCNGC	2 cut(s)	106, 300
Bme1390I	CCNGG	4 cut(s)	112, 303, 368, 408
Bme18I	GGWCC	2 cut(s)	76, 325
BmeT110I	CYCGRG	1 cut(s)	320
BmgT120I	GGNCC	3 cut(s)	76, 318, 325
BmiI	GGNNCC	1 cut(s)	78
BmrFI	CCNGG	4 cut(s)	112, 303, 368, 408
BmrI	ACTGGG	1 cut(s)	177
BmuI	ACTGGG	1 cut(s)	177
BpuEI	CTTGAG	1 cut(s)	211
BpuMI	CCSGG	2 cut(s)	112, 408
BsaJI	CCNNGG	2 cut(s)	88, 321
BsaWI	WCCGGW	1 cut(s)	161
Bsc4I	CCNNNNNNNGG	4 cut(s)	73, 168, 356, 373
Bse1I	ACTGG	2 cut(s)	172, 196
BseBI	CCWGG	2 cut(s)	303, 368
BseDI	CCNNGG	2 cut(s)	88, 321
BseGI	GGATG	1 cut(s)	247
BseLI	CCNNNNNNNGG	4 cut(s)	73, 168, 356, 373
BseMII	CTCAG	2 cut(s)	63, 228
BseNI	ACTGG	2 cut(s)	172, 196
BseRI	GAGGAG	1 cut(s)	274
BseXI	GCAGC	2 cut(s)	116, 285
BshFI	GGCC	2 cut(s)	319, 411
BsiHKCI	CYCGRG	1 cut(s)	320
BsiSI	CCGG	4 cut(s)	67, 111, 162, 408
BslFI	GGGAC	1 cut(s)	190
BslI	CCNNNNNNNGG	4 cut(s)	73, 168, 356, 373
BsmAI	GTCTC	1 cut(s)	24
BsmFI	GGGAC	1 cut(s)	190
BsnI	GGCC	2 cut(s)	319, 411
BsoBI	CYCGRG	1 cut(s)	320
Bsp143I	GATC	2 cut(s)	60, 390
Bsp19I	CCATGG	1 cut(s)	88
BspACI	CCGC	3 cut(s)	64, 214, 255
BspANI	GGCC	2 cut(s)	319, 411
BspCNI	CTCAG	2 cut(s)	64, 229
BspHI	TCATGA	2 cut(s)	124, 151
BspLI	GGNNCC	1 cut(s)	78
BspPI	GGATC	1 cut(s)	55
BspQI	GCTCTTC	1 cut(s)	238
BsrBI	CCGCTC	1 cut(s)	216
BsrI	ACTGG	2 cut(s)	172, 196
BssECI	CCNNGG	2 cut(s)	88, 321
BssMI	GATC	2 cut(s)	60, 390
BssT1I	CCWWGG	1 cut(s)	88
Bst2UI	CCWGG	2 cut(s)	303, 368
Bst4CI	ACNGT	3 cut(s)	329, 335, 356
Bst6I	CTCTTC	1 cut(s)	238
BstDEI	CTNAG	2 cut(s)	72, 237
BstDSI	CCRYGG	1 cut(s)	88
BstF5I	GGATG	1 cut(s)	247
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	2 cut(s)	63, 393
BstMAI	GTCTC	1 cut(s)	24
BstMBI	GATC	2 cut(s)	60, 390
BstMWI	GCNNNNNNNGC	3 cut(s)	24, 213, 222
BstNI	CCWGG	2 cut(s)	303, 368
BstSCI	CCNGG	4 cut(s)	110, 301, 366, 406
BstV1I	GCAGC	2 cut(s)	116, 285
BsuRI	GGCC	2 cut(s)	319, 411
BtgI	CCRYGG	1 cut(s)	88
BtsCI	GGATG	1 cut(s)	247
CciI	TCATGA	2 cut(s)	124, 151
CfoI	GCGC	1 cut(s)	7
Cfr13I	GGNCC	3 cut(s)	76, 318, 325
Csp6I	GTAC	6 cut(s)	22, 115, 142, 172, 195, 250
CviAII	CATG	3 cut(s)	89, 125, 152
CviQI	GTAC	6 cut(s)	22, 115, 142, 172, 195, 250
DdeI	CTNAG	2 cut(s)	72, 237
DpnI	GATC	2 cut(s)	62, 392
DpnII	GATC	2 cut(s)	60, 390
EaeI	YGGCCR	1 cut(s)	409
Eam1104I	CTCTTC	1 cut(s)	238
EarI	CTCTTC	1 cut(s)	238
EciI	GGCGGA	1 cut(s)	53
Eco130I	CCWWGG	1 cut(s)	88
Eco47I	GGWCC	2 cut(s)	76, 325
Eco88I	CYCGRG	1 cut(s)	320
EcoO109I	RGGNCCY	1 cut(s)	76
EcoRII	CCWGG	2 cut(s)	301, 366
EcoT14I	CCWWGG	1 cut(s)	88
ErhI	CCWWGG	1 cut(s)	88
FaeI	CATG	3 cut(s)	92, 128, 155
FaiI	YATR	4 cut(s)	90, 126, 153, 183
FalI	AAGNNNNNCTT	4 cut(s)	260, 292, 387, 419
FaqI	GGGAC	1 cut(s)	190
FatI	CATG	3 cut(s)	88, 124, 151
FauI	CCCGC	2 cut(s)	221, 248
Fnu4HI	GCNGC	2 cut(s)	105, 299
FokI	GGATG	1 cut(s)	254
Fsp4HI	GCNGC	2 cut(s)	105, 299
FspBI	CTAG	1 cut(s)	132
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	2 cut(s)	105, 299
HaeIII	GGCC	2 cut(s)	319, 411
HapII	CCGG	4 cut(s)	67, 111, 162, 408
HhaI	GCGC	1 cut(s)	7
Hin1II	CATG	3 cut(s)	92, 128, 155
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HindIII	AAGCTT	1 cut(s)	401
HinfI	GANTC	1 cut(s)	178
HpaII	CCGG	4 cut(s)	67, 111, 162, 408
HphI	GGTGA	2 cut(s)	77, 202
Hpy166II	GTNNAC	2 cut(s)	85, 359
Hpy188I	TCNGA	3 cut(s)	53, 220, 238
Hpy188III	TCNNGA	2 cut(s)	125, 152
Hpy8I	GTNNAC	2 cut(s)	85, 359
Hpy99I	CGWCG	1 cut(s)	47
HpyAV	CCTTC	2 cut(s)	265, 367
HpyCH4III	ACNGT	3 cut(s)	329, 335, 356
HpyF10VI	GCNNNNNNNGC	3 cut(s)	24, 213, 222
HpyF3I	CTNAG	2 cut(s)	72, 237
Hsp92II	CATG	3 cut(s)	92, 128, 155
HspAI	GCGC	1 cut(s)	5
Kzo9I	GATC	2 cut(s)	60, 390
LguI	GCTCTTC	1 cut(s)	238
Lsp1109I	GCAGC	2 cut(s)	116, 285
MaeI	CTAG	1 cut(s)	132
MaeIII	GTNAC	2 cut(s)	94, 329
MalI	GATC	2 cut(s)	62, 392
MbiI	CCGCTC	1 cut(s)	216
MboI	GATC	2 cut(s)	60, 390
MboII	GAAGA	4 cut(s)	225, 277, 280, 295
MlyI	GAGTC	1 cut(s)	172
MnlI	CCTC	5 cut(s)	67, 232, 252, 255, 316
MslI	CAYNNNNRTG	1 cut(s)	90
MspI	CCGG	4 cut(s)	67, 111, 162, 408
MspR9I	CCNGG	4 cut(s)	112, 303, 368, 408
MvaI	CCWGG	2 cut(s)	303, 368
MwoI	GCNNNNNNNGC	3 cut(s)	24, 213, 222
NciI	CCSGG	2 cut(s)	112, 408
NcoI	CCATGG	1 cut(s)	88
NdeII	GATC	2 cut(s)	60, 390
NlaIII	CATG	3 cut(s)	92, 128, 155
NlaIV	GGNNCC	1 cut(s)	78
OliI	CACNNNNGTG	1 cut(s)	90
PagI	TCATGA	2 cut(s)	124, 151
PciSI	GCTCTTC	1 cut(s)	238
PkrI	GCNGC	2 cut(s)	106, 300
PleI	GAGTC	1 cut(s)	172
PpsI	GAGTC	1 cut(s)	172
PpuMI	RGGWCCY	1 cut(s)	76
Psp5II	RGGWCCY	1 cut(s)	76
Psp6I	CCWGG	2 cut(s)	301, 366
PspGI	CCWGG	2 cut(s)	301, 366
PspN4I	GGNNCC	1 cut(s)	78
PspPI	GGNCC	3 cut(s)	76, 318, 325
PspPPI	RGGWCCY	1 cut(s)	76
RsaI	GTAC	6 cut(s)	23, 116, 143, 173, 196, 251
RsaNI	GTAC	6 cut(s)	22, 115, 142, 172, 195, 250
RseI	CAYNNNNRTG	1 cut(s)	90
SapI	GCTCTTC	1 cut(s)	238
SatI	GCNGC	2 cut(s)	105, 299
Sau3AI	GATC	2 cut(s)	60, 390
Sau96I	GGNCC	3 cut(s)	76, 318, 325
SchI	GAGTC	1 cut(s)	172
ScrFI	CCNGG	4 cut(s)	112, 303, 368, 408
SetI	ASST	6 cut(s)	227, 233, 300, 307, 352, 405
SinI	GGWCC	2 cut(s)	76, 325
SmiMI	CAYNNNNRTG	1 cut(s)	90
SmlI	CTYRAG	1 cut(s)	226
SmoI	CTYRAG	1 cut(s)	226
SsiI	CCGC	3 cut(s)	64, 214, 255
SspMI	CTAG	1 cut(s)	132
StyD4I	CCNGG	4 cut(s)	110, 301, 366, 406
StyI	CCWWGG	1 cut(s)	88
TaaI	ACNGT	3 cut(s)	329, 335, 356
TseI	GCWGC	2 cut(s)	104, 298
TspGWI	ACGGA	1 cut(s)	159
VpaK11BI	GGWCC	2 cut(s)	76, 325
XspI	CTAG	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.