Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0000632

Physical Location & Seq

Genomic Coordinates Reverse (-)

11645172 .. 11647170

Gene Structure 1999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1139700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGCGCATTTACAAAATCATCAATACGGGGCACCACCCACCGCCGCCTGCGGCAACCCGACTCAGGGAACTGACGAGAACAGCAACCCCTTGGTTCCCCAAGTGGACAAGTATGGAAACCCACTTGGTCATCACGGTGCTACTACTGGCATCGCTCCTGCTGCCACCGGAGAATACGGTGCTCATCACACGGCCGTTGTGACCACTGGCTATGCTGCCACCACGGCAGGTGGTCACGGCACACTTGGTCACGATTACGGCAGGAAAGAGCACCATGGTGTCACTGGCATGCTTCATCGCTCCGCCAGCTCAAGCTCTAGCTCTTCAGAGGATGATGGGCTAGGTGGGAGTAGGAAGAAAAAGGGGCTGAAACAGAAGATAAATGAGAAGCTCCCAGGCTCAACCACAACTGACACAGCATACGGCACCGCCGACCCAGGAGGTCACCACCAGGAAAAAGGGATGATGGACAAGATCGAGGACAAGCTGCCGAGTACTGGCCACAAGGATGATCCCCGGTACTCACATACTACGACGTCGACCACCACACCCTCCGGCGGCGGCACCGCTTACACGGAGGAGCACCACGAAAAGAAAGGGATCATGGACAAGATCATAGAGAAGCTTCGCGGCGGACACCACAAGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001786 GO:0003674 GO:0005488 GO:0005507 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0008289 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0009961 GO:0010033 GO:0010035 GO:0010243 GO:0012506 GO:0016020 GO:0016151 GO:0031090 GO:0031982 GO:0033993 GO:0035091 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043200 GO:0043226 GO:0043227 GO:0044422 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0070300 GO:0072341 GO:0097305 GO:1901611 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dehydrin

Protein Analysis

217

Amino Acids

22.61

Weight (kDa)

7.04

Isoelectric Point (pI)

25.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dehydrin	PF00257	32 - 165	2.8e-29	Dehydrin
Dehydrin	PF00257	147 - 213	2.3e-13	Dehydrin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000632)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12550 FvH4_1g12560 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582 FvH4_1g12582
malus_domestica	MD02G1139700.v1.1 MD02G1139800.v1.1 MD02G1139900.v1.1 MD02G1140000.v1.1 MD02G1140100.v1.1 MD15G1253900.v1.1
prunus_persica	Prupe.7G161000_v2.0.a1 Prupe.7G161100_v2.0.a1 Prupe.7G161200_v2.0.a1
pyrus_communis	pycom02g11040 pycom02g11050 pycom02g11060 pycom15g22290
rosa_chinensis	RchiOBHm_Chr2g0100511 RchiOBHm_Chr2g0100521 RchiOBHm_Chr2g0100551
rosa_laevigata	RLG00000016977 RLG00000016979 RLG00000016980 RLG00000016984
rosa_multiflora	Rmu_co8033534.1_g000001 Rmu_co8351081.1_g000001 Rmu_sc0000528.1_g000012 Rmu_sc0000528.1_g000015 Rmu_sc0000528.1_g000020 Rmu_sc0000528.1_g000022 Rmu_sc0005122.1_g000019 Rmu_sc0006445.1_g000015 Rmu_sc0022708.1_g000001 Rmu_sc0022708.1_g000004 Rmu_sc0023932.1_g000001 Rmu_sc0026349.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142150 Rroxscaffold_2G00142160 Rroxscaffold_2G00142180
rosa_rugosa	Rorug02G0088800 Rorug02G0088900 Rorug02G0089000 Rorug02G0089200 Rorug02G0089400
rosa_samantha	Rh1BG215800 Rh1DG241900 Rh2AG138400 Rh2AG138500 Rh2BG141400 Rh2BG141600 Rh2BG141700 Rh2BG141900 Rh2CG143600 Rh2CG143800 Rh2CG144000 Rh2CG144200 Rh2DG143200 Rh2DG143300 Rh2DG143400 Rh2DG143600
rosa_wichuraiana	Rw2G010820 Rw2G010830 Rw2G010840 Rw2G010850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	218
AatII	GACGTC	1 cut(s)	539
Acc36I	ACCTGC	1 cut(s)	218
AccB1I	GGYRCC	3 cut(s)	31, 425, 563
AccI	GTMKAC	1 cut(s)	539
AccII	CGCG	1 cut(s)	630
AclWI	GGATC	2 cut(s)	506, 608
AcoI	YGGCCR	2 cut(s)	192, 499
AcuI	CTGAAG	1 cut(s)	309
AcyI	GRCGYC	1 cut(s)	536
AfaI	GTAC	2 cut(s)	496, 521
AfiI	CCNNNNNNNGG	4 cut(s)	64, 65, 497, 557
AjnI	CCWGG	3 cut(s)	394, 436, 450
AleI	CACNNNNGTG	1 cut(s)	276
AluBI	AGCT	6 cut(s)	309, 315, 321, 391, 487, 625
AluI	AGCT	6 cut(s)	309, 315, 321, 391, 487, 625
Alw21I	GWGCWC	3 cut(s)	184, 273, 585
AlwI	GGATC	2 cut(s)	506, 608
AoxI	GGCC	2 cut(s)	192, 499
ApeKI	GCWGC	3 cut(s)	161, 215, 487
AspLEI	GCGC	1 cut(s)	7
AsuC2I	CCSGG	1 cut(s)	517
AsuHPI	GGTGA	1 cut(s)	437
BaeGI	GKGCMC	1 cut(s)	34
BalI	TGGCCA	1 cut(s)	501
BanI	GGYRCC	3 cut(s)	31, 425, 563
Bbv12I	GWGCWC	3 cut(s)	184, 273, 585
BbvI	GCAGC	3 cut(s)	148, 202, 474
BccI	CCATC	2 cut(s)	329, 460
BceAI	ACGGC	6 cut(s)	179, 207, 240, 253, 274, 439
BciT130I	CCWGG	3 cut(s)	396, 438, 452
BcnI	CCSGG	1 cut(s)	517
BfaI	CTAG	2 cut(s)	318, 341
BfuAI	ACCTGC	1 cut(s)	218
BglI	GCCNNNNNGGC	1 cut(s)	224
BisI	GCNGC	8 cut(s)	45, 52, 162, 216, 488, 559, 562, 631
BlsI	GCNGC	8 cut(s)	46, 53, 163, 217, 489, 560, 563, 632
BmcAI	AGTACT	1 cut(s)	496
Bme1390I	CCNGG	4 cut(s)	396, 438, 452, 517
BmiI	GGNNCC	4 cut(s)	33, 96, 427, 565
BmrFI	CCNGG	4 cut(s)	396, 438, 452, 517
BmsI	GCATC	1 cut(s)	159
BpuEI	CTTGAG	1 cut(s)	295
BpuMI	CCSGG	1 cut(s)	517
BsaHI	GRCGYC	1 cut(s)	536
BsaJI	CCNNGG	6 cut(s)	90, 222, 274, 394, 436, 515
BsaWI	WCCGGW	1 cut(s)	167
Bsc4I	CCNNNNNNNGG	4 cut(s)	64, 65, 497, 557
Bse1I	ACTGG	4 cut(s)	151, 211, 289, 502
BseBI	CCWGG	3 cut(s)	396, 438, 452
BseDI	CCNNGG	6 cut(s)	90, 222, 274, 394, 436, 515
BseGI	GGATG	3 cut(s)	337, 468, 514
BseLI	CCNNNNNNNGG	4 cut(s)	64, 65, 497, 557
BseMII	CTCAG	1 cut(s)	77
BseNI	ACTGG	4 cut(s)	151, 211, 289, 502
BseRI	GAGGAG	1 cut(s)	593
BseSI	GKGCMC	1 cut(s)	34
BseX3I	CGGCCG	1 cut(s)	192
BseXI	GCAGC	3 cut(s)	148, 202, 474
Bsh1236I	CGCG	1 cut(s)	630
Bsh1285I	CGRYCG	1 cut(s)	195
BshFI	GGCC	2 cut(s)	194, 501
BshNI	GGYRCC	3 cut(s)	31, 425, 563
BsiEI	CGRYCG	1 cut(s)	195
BsiHKAI	GWGCWC	3 cut(s)	184, 273, 585
BsiSI	CCGG	3 cut(s)	168, 517, 555
BslI	CCNNNNNNNGG	4 cut(s)	64, 65, 497, 557
BsnI	GGCC	2 cut(s)	194, 501
Bsp1286I	GDGCHC	4 cut(s)	34, 184, 273, 585
Bsp143I	GATC	4 cut(s)	474, 511, 600, 612
Bsp19I	CCATGG	1 cut(s)	274
BspANI	GGCC	2 cut(s)	194, 501
BspCNI	CTCAG	1 cut(s)	76
BspFNI	CGCG	1 cut(s)	630
BspLI	GGNNCC	4 cut(s)	33, 96, 427, 565
BspMI	ACCTGC	1 cut(s)	218
BspPI	GGATC	2 cut(s)	506, 608
BspQI	GCTCTTC	1 cut(s)	328
BspT107I	GGYRCC	3 cut(s)	31, 425, 563
BsrI	ACTGG	4 cut(s)	151, 211, 289, 502
BssECI	CCNNGG	6 cut(s)	90, 222, 274, 394, 436, 515
BssMI	GATC	4 cut(s)	474, 511, 600, 612
BssNI	GRCGYC	1 cut(s)	536
BssT1I	CCWWGG	2 cut(s)	90, 274
Bst2UI	CCWGG	3 cut(s)	396, 438, 452
Bst4CI	ACNGT	2 cut(s)	137, 179
Bst6I	CTCTTC	1 cut(s)	328
BstACI	GRCGYC	1 cut(s)	536
BstC8I	GCNNGC	3 cut(s)	49, 290, 307
BstDEI	CTNAG	1 cut(s)	63
BstDSI	CCRYGG	2 cut(s)	222, 274
BstEII	GGTNACC	1 cut(s)	443
BstF5I	GGATG	3 cut(s)	337, 468, 514
BstFNI	CGCG	1 cut(s)	630
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	4 cut(s)	477, 514, 603, 615
BstMBI	GATC	4 cut(s)	474, 511, 600, 612
BstMCI	CGRYCG	1 cut(s)	195
BstMWI	GCNNNNNNNGC	3 cut(s)	161, 224, 306
BstNI	CCWGG	3 cut(s)	396, 438, 452
BstNSI	RCATGY	1 cut(s)	292
BstPI	GGTNACC	1 cut(s)	443
BstSCI	CCNGG	4 cut(s)	394, 436, 450, 515
BstSLI	GKGCMC	1 cut(s)	34
BstUI	CGCG	1 cut(s)	630
BstV1I	GCAGC	3 cut(s)	148, 202, 474
BstZI	CGGCCG	1 cut(s)	192
BsuRI	GGCC	2 cut(s)	194, 501
BtgI	CCRYGG	2 cut(s)	222, 274
BtgZI	GCGATG	2 cut(s)	136, 281
BtsCI	GGATG	3 cut(s)	337, 468, 514
BtsIMutI	CAGTG	2 cut(s)	204, 282
BveI	ACCTGC	1 cut(s)	218
Cac8I	GCNNGC	3 cut(s)	49, 290, 307
CfoI	GCGC	1 cut(s)	7
Csp6I	GTAC	2 cut(s)	495, 520
CviAII	CATG	3 cut(s)	275, 289, 604
CviQI	GTAC	2 cut(s)	495, 520
DdeI	CTNAG	1 cut(s)	63
DpnI	GATC	4 cut(s)	476, 513, 602, 614
DpnII	GATC	4 cut(s)	474, 511, 600, 612
EaeI	YGGCCR	2 cut(s)	192, 499
EagI	CGGCCG	1 cut(s)	192
Eam1104I	CTCTTC	1 cut(s)	328
EarI	CTCTTC	1 cut(s)	328
EciI	GGCGGA	2 cut(s)	292, 648
EclXI	CGGCCG	1 cut(s)	192
Eco130I	CCWWGG	2 cut(s)	90, 274
Eco52I	CGGCCG	1 cut(s)	192
Eco57I	CTGAAG	1 cut(s)	309
Eco91I	GGTNACC	1 cut(s)	443
EcoO65I	GGTNACC	1 cut(s)	443
EcoRII	CCWGG	3 cut(s)	394, 436, 450
EcoT14I	CCWWGG	2 cut(s)	90, 274
ErhI	CCWWGG	2 cut(s)	90, 274
FaeI	CATG	3 cut(s)	278, 292, 607
FaiI	YATR	9 cut(s)	114, 213, 276, 290, 421, 528, 605, 617, 649
FatI	CATG	3 cut(s)	274, 288, 603
FblI	GTMKAC	1 cut(s)	539
Fnu4HI	GCNGC	8 cut(s)	45, 52, 162, 216, 488, 559, 562, 631
FokI	GGATG	3 cut(s)	344, 475, 521
Fsp4HI	GCNGC	8 cut(s)	45, 52, 162, 216, 488, 559, 562, 631
FspBI	CTAG	2 cut(s)	318, 341
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	8 cut(s)	45, 52, 162, 216, 488, 559, 562, 631
HaeIII	GGCC	2 cut(s)	194, 501
HapII	CCGG	3 cut(s)	168, 517, 555
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	1 cut(s)	536
Hin1II	CATG	3 cut(s)	278, 292, 607
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HincII	GTYRAC	1 cut(s)	540
HindII	GTYRAC	1 cut(s)	540
HindIII	AAGCTT	1 cut(s)	623
HinfI	GANTC	1 cut(s)	61
HpaII	CCGG	3 cut(s)	168, 517, 555
HphI	GGTGA	1 cut(s)	437
Hpy166II	GTNNAC	2 cut(s)	106, 540
Hpy188I	TCNGA	1 cut(s)	328
Hpy188III	TCNNGA	1 cut(s)	251
Hpy8I	GTNNAC	2 cut(s)	106, 540
Hpy99I	CGWCG	2 cut(s)	538, 541
HpyCH4III	ACNGT	2 cut(s)	137, 179
HpyCH4IV	ACGT	1 cut(s)	536
HpyF10VI	GCNNNNNNNGC	3 cut(s)	161, 224, 306
HpyF3I	CTNAG	1 cut(s)	63
HpySE526I	ACGT	1 cut(s)	536
Hsp92I	GRCGYC	1 cut(s)	536
Hsp92II	CATG	3 cut(s)	278, 292, 607
HspAI	GCGC	1 cut(s)	5
Kzo9I	GATC	4 cut(s)	474, 511, 600, 612
LguI	GCTCTTC	1 cut(s)	328
LmnI	GCTCC	4 cut(s)	160, 305, 396, 580
Lsp1109I	GCAGC	3 cut(s)	148, 202, 474
LweI	GCATC	1 cut(s)	159
MaeI	CTAG	2 cut(s)	318, 341
MaeII	ACGT	1 cut(s)	536
MaeIII	GTNAC	5 cut(s)	199, 233, 248, 280, 443
MalI	GATC	4 cut(s)	476, 513, 602, 614
MboI	GATC	4 cut(s)	474, 511, 600, 612
MboII	GAAGA	3 cut(s)	315, 367, 388
MhlI	GDGCHC	4 cut(s)	34, 184, 273, 585
MlsI	TGGCCA	1 cut(s)	501
MluNI	TGGCCA	1 cut(s)	501
MlyI	GAGTC	1 cut(s)	55
MnlI	CCTC	5 cut(s)	322, 434, 472, 562, 571
Mox20I	TGGCCA	1 cut(s)	501
MscI	TGGCCA	1 cut(s)	501
MslI	CAYNNNNRTG	4 cut(s)	135, 276, 287, 507
Msp20I	TGGCCA	1 cut(s)	501
MspI	CCGG	3 cut(s)	168, 517, 555
MspR9I	CCNGG	4 cut(s)	396, 438, 452, 517
MvaI	CCWGG	3 cut(s)	396, 438, 452
MvnI	CGCG	1 cut(s)	630
MwoI	GCNNNNNNNGC	3 cut(s)	161, 224, 306
NciI	CCSGG	1 cut(s)	517
NcoI	CCATGG	1 cut(s)	274
NdeII	GATC	4 cut(s)	474, 511, 600, 612
NlaIII	CATG	3 cut(s)	278, 292, 607
NlaIV	GGNNCC	4 cut(s)	33, 96, 427, 565
NmeAIII	GCCGAG	1 cut(s)	516
NmuCI	GTSAC	5 cut(s)	199, 233, 248, 280, 443
NspI	RCATGY	1 cut(s)	292
OliI	CACNNNNGTG	1 cut(s)	276
PaeI	GCATGC	1 cut(s)	292
PaqCI	CACCTGC	1 cut(s)	218
PciSI	GCTCTTC	1 cut(s)	328
PcsI	WCGNNNNNNNCGW	1 cut(s)	429
PkrI	GCNGC	8 cut(s)	46, 53, 163, 217, 489, 560, 563, 632
PleI	GAGTC	1 cut(s)	55
PpsI	GAGTC	1 cut(s)	55
Psp6I	CCWGG	3 cut(s)	394, 436, 450
PspEI	GGTNACC	1 cut(s)	443
PspGI	CCWGG	3 cut(s)	394, 436, 450
PspN4I	GGNNCC	4 cut(s)	33, 96, 427, 565
RsaI	GTAC	2 cut(s)	496, 521
RsaNI	GTAC	2 cut(s)	495, 520
RseI	CAYNNNNRTG	4 cut(s)	135, 276, 287, 507
SalI	GTCGAC	1 cut(s)	538
SapI	GCTCTTC	1 cut(s)	328
SatI	GCNGC	8 cut(s)	45, 52, 162, 216, 488, 559, 562, 631
Sau3AI	GATC	4 cut(s)	474, 511, 600, 612
ScaI	AGTACT	1 cut(s)	496
SchI	GAGTC	1 cut(s)	55
ScrFI	CCNGG	4 cut(s)	396, 438, 452, 517
SduI	GDGCHC	4 cut(s)	34, 184, 273, 585
SfaNI	GCATC	1 cut(s)	159
SmiMI	CAYNNNNRTG	4 cut(s)	135, 276, 287, 507
SmlI	CTYRAG	1 cut(s)	310
SmoI	CTYRAG	1 cut(s)	310
SphI	GCATGC	1 cut(s)	292
SspMI	CTAG	2 cut(s)	318, 341
StyD4I	CCNGG	4 cut(s)	394, 436, 450, 515
StyI	CCWWGG	2 cut(s)	90, 274
TaaI	ACNGT	2 cut(s)	137, 179
TaiI	ACGT	1 cut(s)	539
TaqI	TCGA	2 cut(s)	477, 539
TatI	WGTACW	1 cut(s)	494
TauI	GCSGC	5 cut(s)	47, 54, 561, 564, 633
TscAI	CASTG	2 cut(s)	211, 289
TseFI	GTSAC	5 cut(s)	199, 233, 248, 280, 443
TseI	GCWGC	3 cut(s)	161, 215, 487
Tsp45I	GTSAC	5 cut(s)	199, 233, 248, 280, 443
TspDTI	ATGAA	1 cut(s)	284
TspGWI	ACGGA	1 cut(s)	590
TspRI	CASTG	2 cut(s)	211, 289
XceI	RCATGY	1 cut(s)	292
XcmI	CCANNNNNNNNNTGG	1 cut(s)	281
XmiI	GTMKAC	1 cut(s)	539
XspI	CTAG	2 cut(s)	318, 341
ZraI	GACGTC	1 cut(s)	537
ZrmI	AGTACT	1 cut(s)	496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.