Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0000649

Physical Location & Seq

Genomic Coordinates Forward (+)

287823 .. 288705

Gene Structure 883 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g00190.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGTCGATCTCCGACGAGGTCAAACCACGGTCGGTCACCGTCGAATCTCAGCCCTCTAGCTCGTCCGCTACTCCATCCGTCCCGCTGAGCTTGGTTGAGAAGTACGATATCTTGAGGAGTATCGCGGAGGAGTGTGTCCAAGATGAGGCGCTTAAGAAGTTGCTAGCGAACAAGGCCGAGCCGATCTGCTACAACGGATTCGATAGGGGTGTAATTTTCTATTATAAACTTCTTGTGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004812 GO:0004831 GO:0005488 GO:0005515 GO:0005524 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006437 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016597 GO:0016874 GO:0016875 GO:0017076 GO:0019538 GO:0019752 GO:0030554 GO:0031406 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034645 GO:0034660 GO:0035639 GO:0036094 GO:0042802 GO:0042803 GO:0043038 GO:0043039 GO:0043043 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043177 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0046483 GO:0046983 GO:0071704 GO:0072545 GO:0090304 GO:0097159 GO:0097367 GO:0140098 GO:0140101 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_1b

Protein Analysis

81

Amino Acids

8.87

Weight (kDa)

4.99

Isoelectric Point (pI)

68.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33840
fragaria_vesca	FvH4_2g00190 FvH4_4g18133 FvH4_4g36450 FvH4_5g02490 FvH4_5g35150 FvH4_6g35840
malus_domestica	MD04G1034100.v1.1 MD06G1084100.v1.1
prunus_persica	Prupe.2G139100_v2.0.a1 Prupe.5G096900_v2.0.a1 Prupe.5G096900_v2.0.a1 Prupe.5G100500_v2.0.a1 Prupe.5G100500_v2.0.a1 Prupe.5G100500_v2.0.a1
pyrus_communis	pycom04g02850
rosa_chinensis	RchiOBHm_Chr1g0324941 RchiOBHm_Chr1g0340751 RchiOBHm_Chr2g0133721 RchiOBHm_Chr2g0153921 RchiOBHm_Chr4g0396761 RchiOBHm_Chr4g0414291 RchiOBHm_Chr4g0429871 RchiOBHm_Chr4g0446211 RchiOBHm_Chr5g0057181 RchiOBHm_Chr5g0057391 RchiOBHm_Chr5g0077561 RchiOBHm_Chr6g0307121 RchiOBHm_Chr7g0197611
rosa_laevigata	RLG00000003922 RLG00000005681 RLG00000017313 RLG00000029149 RLG00000035152
rosa_multiflora	Rmu_co8043936.1_g000001 Rmu_sc0001164.1_g000009 Rmu_sc0001334.1_g000004 Rmu_sc0004952.1_g000011 Rmu_sc0013154.1_g000007 Rmu_sc0017650.1_g000006 Rmu_sc0018062.1_g000003
rosa_roxburghii	Rroxscaffold_1G00023030 Rroxscaffold_2G00094650 Rroxscaffold_3G00223000 Rroxscaffold_3G00232150 Rroxscaffold_3G00248030 Rroxscaffold_3G00248040 Rroxscaffold_3G00258320
rosa_rugosa	Rorug04G0184600 Rorug04G0368500 Rorug05G0306000 Rorug05G0307100 Rorug07G0041900
rosa_samantha	Rh2CG164400 Rh2DG389300 Rh3AG306800 Rh4AG430600 Rh4BG440000 Rh4CG457300 Rh4DG438500 Rh5AG375500 Rh5BG386300 Rh5CG409700 Rh5DG400300 Rh6CG481100 Rh7AG166300 Rh7AG360600 Rh7BG168400 Rh7CG174700 Rh7DG168000 Rh7DG387600
rosa_wichuraiana	Rw2G022790 Rw4G036780 Rw5G035320 Rw5G035460 Rw7G014480 Rw7G038030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	225
AccII	CGCG	1 cut(s)	125
AciI	CCGC	3 cut(s)	66, 83, 125
AfaI	GTAC	1 cut(s)	104
AfiI	CCNNNNNNNGG	1 cut(s)	145
AflII	CTTAAG	1 cut(s)	152
AluBI	AGCT	2 cut(s)	60, 90
AluI	AGCT	2 cut(s)	60, 90
AoxI	GGCC	1 cut(s)	174
AspLEI	GCGC	1 cut(s)	151
AsuHPI	GGTGA	1 cut(s)	28
AsuNHI	GCTAGC	1 cut(s)	163
BccI	CCATC	1 cut(s)	82
BfaI	CTAG	2 cut(s)	57, 164
BfoI	RGCGCY	1 cut(s)	152
BfrI	CTTAAG	1 cut(s)	152
BlpI	GCTNAGC	1 cut(s)	86
BmtI	GCTAGC	1 cut(s)	167
Bpu1102I	GCTNAGC	1 cut(s)	86
BpuEI	CTTGAG	1 cut(s)	133
BsaJI	CCNNGG	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	1 cut(s)	145
BseDI	CCNNGG	1 cut(s)	26
BseGI	GGATG	1 cut(s)	74
BseLI	CCNNNNNNNGG	1 cut(s)	145
BseMII	CTCAG	2 cut(s)	62, 77
BseRI	GAGGAG	2 cut(s)	130, 143
Bsh1236I	CGCG	1 cut(s)	125
Bsh1285I	CGRYCG	1 cut(s)	32
BshFI	GGCC	1 cut(s)	176
BsiEI	CGRYCG	1 cut(s)	32
BslFI	GGGAC	1 cut(s)	65
BslI	CCNNNNNNNGG	1 cut(s)	145
BsmFI	GGGAC	1 cut(s)	65
BsnI	GGCC	1 cut(s)	176
Bsp143I	GATC	2 cut(s)	6, 183
Bsp1720I	GCTNAGC	1 cut(s)	86
BspACI	CCGC	3 cut(s)	66, 83, 125
BspANI	GGCC	1 cut(s)	176
BspCNI	CTCAG	2 cut(s)	61, 78
BspFNI	CGCG	1 cut(s)	125
BspOI	GCTAGC	1 cut(s)	167
BspTI	CTTAAG	1 cut(s)	152
BssECI	CCNNGG	1 cut(s)	26
BssMI	GATC	2 cut(s)	6, 183
Bst4CI	ACNGT	2 cut(s)	30, 40
BstAFI	CTTAAG	1 cut(s)	152
BstC8I	GCNNGC	1 cut(s)	165
BstDEI	CTNAG	2 cut(s)	48, 86
BstDSI	CCRYGG	1 cut(s)	26
BstEII	GGTNACC	1 cut(s)	34
BstF5I	GGATG	1 cut(s)	74
BstFNI	CGCG	1 cut(s)	125
BstH2I	RGCGCY	1 cut(s)	152
BstHHI	GCGC	1 cut(s)	151
BstKTI	GATC	2 cut(s)	9, 186
BstMBI	GATC	2 cut(s)	6, 183
BstMCI	CGRYCG	1 cut(s)	32
BstMWI	GCNNNNNNNGC	1 cut(s)	173
BstPI	GGTNACC	1 cut(s)	34
BstUI	CGCG	1 cut(s)	125
BsuRI	GGCC	1 cut(s)	176
BtgI	CCRYGG	1 cut(s)	26
BtsCI	GGATG	1 cut(s)	74
Cac8I	GCNNGC	1 cut(s)	165
CfoI	GCGC	1 cut(s)	151
Csp6I	GTAC	1 cut(s)	103
CviJI	RGCY	5 cut(s)	52, 60, 90, 176, 181
CviKI_1	RGCY	5 cut(s)	52, 60, 90, 176, 181
CviQI	GTAC	1 cut(s)	103
DdeI	CTNAG	2 cut(s)	48, 86
DpnI	GATC	2 cut(s)	8, 185
DpnII	GATC	2 cut(s)	6, 183
Eco32I	GATATC	1 cut(s)	109
Eco91I	GGTNACC	1 cut(s)	34
EcoO65I	GGTNACC	1 cut(s)	34
EcoRV	GATATC	1 cut(s)	109
FaiI	YATR	1 cut(s)	225
FaqI	GGGAC	1 cut(s)	65
FauI	CCCGC	1 cut(s)	90
FokI	GGATG	1 cut(s)	61
FspBI	CTAG	2 cut(s)	57, 164
GlaI	GCGC	1 cut(s)	150
HaeII	RGCGCY	1 cut(s)	152
HaeIII	GGCC	1 cut(s)	176
HhaI	GCGC	1 cut(s)	151
Hin6I	GCGC	1 cut(s)	149
HinP1I	GCGC	1 cut(s)	149
HinfI	GANTC	2 cut(s)	44, 198
HphI	GGTGA	1 cut(s)	28
Hpy188I	TCNGA	1 cut(s)	13
Hpy188III	TCNNGA	1 cut(s)	112
Hpy99I	CGWCG	2 cut(s)	17, 44
HpyCH4III	ACNGT	2 cut(s)	30, 40
HpyF10VI	GCNNNNNNNGC	1 cut(s)	173
HpyF3I	CTNAG	2 cut(s)	48, 86
HspAI	GCGC	1 cut(s)	149
Kzo9I	GATC	2 cut(s)	6, 183
MaeI	CTAG	2 cut(s)	57, 164
MaeIII	GTNAC	1 cut(s)	34
MalI	GATC	2 cut(s)	8, 185
MboI	GATC	2 cut(s)	6, 183
MluCI	AATT	1 cut(s)	213
MmeI	TCCRAC	1 cut(s)	36
MnlI	CCTC	5 cut(s)	10, 64, 108, 121, 139
MseI	TTAA	1 cut(s)	153
MspA1I	CMGCKG	1 cut(s)	85
MspCI	CTTAAG	1 cut(s)	152
MvnI	CGCG	1 cut(s)	125
MwoI	GCNNNNNNNGC	1 cut(s)	173
NdeII	GATC	2 cut(s)	6, 183
NheI	GCTAGC	1 cut(s)	163
NmeAIII	GCCGAG	1 cut(s)	202
NmuCI	GTSAC	1 cut(s)	34
PfeI	GAWTC	2 cut(s)	44, 198
PflFI	GACNNNGTC	1 cut(s)	17
PsiI	TTATAA	1 cut(s)	225
PspEI	GGTNACC	1 cut(s)	34
PsyI	GACNNNGTC	1 cut(s)	17
RsaI	GTAC	1 cut(s)	104
RsaNI	GTAC	1 cut(s)	103
SaqAI	TTAA	1 cut(s)	153
Sau3AI	GATC	2 cut(s)	6, 183
SetI	ASST	3 cut(s)	21, 62, 92
SmlI	CTYRAG	2 cut(s)	112, 152
SmoI	CTYRAG	2 cut(s)	112, 152
Sse9I	AATT	1 cut(s)	213
SsiI	CCGC	3 cut(s)	66, 83, 125
SspMI	CTAG	2 cut(s)	57, 164
TaaI	ACNGT	2 cut(s)	30, 40
TaqI	TCGA	3 cut(s)	5, 42, 201
TaqII	GACCGA	1 cut(s)	22
TasI	AATT	1 cut(s)	213
TfiI	GAWTC	2 cut(s)	44, 198
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TseFI	GTSAC	1 cut(s)	34
Tsp45I	GTSAC	1 cut(s)	34
TspGWI	ACGGA	2 cut(s)	67, 210
Tth111I	GACNNNGTC	1 cut(s)	17
Vha464I	CTTAAG	1 cut(s)	152
XspI	CTAG	2 cut(s)	57, 164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.