Rroxscaffold_3G00232150

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000649
Physical Location & Seq
Reverse (-)
17804196 .. 17804447
252 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00232150.1

Sequence Viewer

Length: 252 bp
ATGAAAAGCCATCGGAGACGTTGCTGCGGGATTGTCATCGATACGCTGCCCGGCATGGTCATCGGGACGCTGCCCGGCATGGTCATCGGAGGCGCTGCCCGGCATGGTCATCGGAGGCGCTTCTCCGACATGGTCATCAGGGTCTTCGACCTGGCTTATGGAGACGCCGCTCCAGCATGTTTGTTGAGCATGGGGCCTTTAATACCTGCAAGCAAAAAAATGATGGAGGAGGACGATGAGAGACGGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

9.15

Weight (kDa)

9.41

Isoelectric Point (pI)

70.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000649)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33840
fragaria_vesca FvH4_2g00190 FvH4_4g18133 FvH4_4g36450 FvH4_5g02490 FvH4_5g35150 FvH4_6g35840
malus_domestica MD04G1034100.v1.1 MD06G1084100.v1.1
prunus_persica Prupe.2G139100_v2.0.a1 Prupe.5G096900_v2.0.a1 Prupe.5G096900_v2.0.a1 Prupe.5G100500_v2.0.a1 Prupe.5G100500_v2.0.a1 Prupe.5G100500_v2.0.a1
pyrus_communis pycom04g02850
rosa_chinensis RchiOBHm_Chr1g0324941 RchiOBHm_Chr1g0340751 RchiOBHm_Chr2g0133721 RchiOBHm_Chr2g0153921 RchiOBHm_Chr4g0396761 RchiOBHm_Chr4g0414291 RchiOBHm_Chr4g0429871 RchiOBHm_Chr4g0446211 RchiOBHm_Chr5g0057181 RchiOBHm_Chr5g0057391 RchiOBHm_Chr5g0077561 RchiOBHm_Chr6g0307121 RchiOBHm_Chr7g0197611
rosa_laevigata RLG00000003922 RLG00000005681 RLG00000017313 RLG00000029149 RLG00000035152
rosa_multiflora Rmu_co8043936.1_g000001 Rmu_sc0001164.1_g000009 Rmu_sc0001334.1_g000004 Rmu_sc0004952.1_g000011 Rmu_sc0013154.1_g000007 Rmu_sc0017650.1_g000006 Rmu_sc0018062.1_g000003
rosa_roxburghii Rroxscaffold_1G00023030 Rroxscaffold_2G00094650 Rroxscaffold_3G00223000 Rroxscaffold_3G00232150 Rroxscaffold_3G00248030 Rroxscaffold_3G00248040 Rroxscaffold_3G00258320
rosa_rugosa Rorug04G0184600 Rorug04G0368500 Rorug05G0306000 Rorug05G0307100 Rorug07G0041900
rosa_samantha Rh2CG164400 Rh2DG389300 Rh3AG306800 Rh4AG430600 Rh4BG440000 Rh4CG457300 Rh4DG438500 Rh5AG375500 Rh5BG386300 Rh5CG409700 Rh5DG400300 Rh6CG481100 Rh7AG166300 Rh7AG360600 Rh7BG168400 Rh7CG174700 Rh7DG168000 Rh7DG387600
rosa_wichuraiana Rw2G022790 Rw4G036780 Rw5G035320 Rw5G035460 Rw7G014480 Rw7G038030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 214
AccBSI CCGCTC 1 cut(s) 170
AciI CCGC 2 cut(s) 27, 168
AcyI GRCGYC 1 cut(s) 165
AjnI CCWGG 1 cut(s) 150
Alw26I GTCTC 3 cut(s) 10, 156, 235
AoxI GGCC 1 cut(s) 194
ApeKI GCWGC 4 cut(s) 24, 46, 70, 95
AspLEI GCGC 2 cut(s) 95, 120
AspS9I GGNCC 1 cut(s) 194
AsuC2I CCSGG 3 cut(s) 51, 75, 100
BbsI GAAGAC 1 cut(s) 136
BbvI GCAGC 4 cut(s) 11, 33, 57, 82
BccI CCATC 2 cut(s) 18, 217
BcgI CGANNNNNNTGC 6 cut(s) 43, 67, 77, 92, 101, 126
BciT130I CCWGG 1 cut(s) 152
BcnI CCSGG 3 cut(s) 51, 75, 100
BcoDI GTCTC 3 cut(s) 10, 156, 235
BfoI RGCGCY 2 cut(s) 96, 121
BfuAI ACCTGC 1 cut(s) 214
BisI GCNGC 5 cut(s) 25, 47, 71, 96, 168
BlsI GCNGC 5 cut(s) 26, 48, 72, 97, 169
Bme1390I CCNGG 4 cut(s) 51, 75, 100, 152
BmgT120I GGNCC 1 cut(s) 194
BmiI GGNNCC 1 cut(s) 195
BmrFI CCNGG 4 cut(s) 51, 75, 100, 152
BpiI GAAGAC 1 cut(s) 136
BpmI CTGGAG 1 cut(s) 156
BpuMI CCSGG 3 cut(s) 51, 75, 100
Bsa29I ATCGAT 1 cut(s) 39
BsaBI GATNNNNATC 1 cut(s) 35
BsaHI GRCGYC 1 cut(s) 165
Bse8I GATNNNNATC 1 cut(s) 35
BseBI CCWGG 1 cut(s) 152
BseCI ATCGAT 1 cut(s) 39
BseJI GATNNNNATC 1 cut(s) 35
BseRI GAGGAG 1 cut(s) 242
BseXI GCAGC 4 cut(s) 11, 33, 57, 82
BshFI GGCC 1 cut(s) 196
BshVI ATCGAT 1 cut(s) 39
BsiSI CCGG 3 cut(s) 51, 75, 100
BslFI GGGAC 1 cut(s) 79
BsmAI GTCTC 3 cut(s) 10, 156, 235
BsmBI CGTCTC 3 cut(s) 10, 156, 235
BsmFI GGGAC 1 cut(s) 79
BsnI GGCC 1 cut(s) 196
BspACI CCGC 2 cut(s) 27, 168
BspANI GGCC 1 cut(s) 196
BspDI ATCGAT 1 cut(s) 39
BspLI GGNNCC 1 cut(s) 195
BspMI ACCTGC 1 cut(s) 214
BsrBI CCGCTC 1 cut(s) 170
BssNI GRCGYC 1 cut(s) 165
Bst2UI CCWGG 1 cut(s) 152
BstACI GRCGYC 1 cut(s) 165
BstC8I GCNNGC 1 cut(s) 211
BstH2I RGCGCY 2 cut(s) 96, 121
BstHHI GCGC 2 cut(s) 95, 120
BstMAI GTCTC 3 cut(s) 10, 156, 235
BstMWI GCNNNNNNNGC 1 cut(s) 173
BstNI CCWGG 1 cut(s) 152
BstNSI RCATGY 1 cut(s) 180
BstSCI CCNGG 4 cut(s) 49, 73, 98, 150
BstV1I GCAGC 4 cut(s) 11, 33, 57, 82
BstV2I GAAGAC 1 cut(s) 136
Bsu15I ATCGAT 1 cut(s) 39
BsuRI GGCC 1 cut(s) 196
BsuTUI ATCGAT 1 cut(s) 39
BveI ACCTGC 1 cut(s) 214
Cac8I GCNNGC 1 cut(s) 211
CfoI GCGC 2 cut(s) 95, 120
Cfr13I GGNCC 1 cut(s) 194
ClaI ATCGAT 1 cut(s) 39
CseI GACGC 2 cut(s) 76, 173
CviAII CATG 6 cut(s) 55, 79, 104, 130, 177, 190
CviJI RGCY 3 cut(s) 9, 155, 196
CviKI_1 RGCY 3 cut(s) 9, 155, 196
EcoO109I RGGNCCY 1 cut(s) 194
EcoRII CCWGG 1 cut(s) 150
Esp3I CGTCTC 3 cut(s) 10, 156, 235
FaeI CATG 6 cut(s) 58, 82, 107, 133, 180, 193
FaiI YATR 7 cut(s) 56, 80, 105, 131, 159, 178, 191
FaqI GGGAC 1 cut(s) 79
FatI CATG 6 cut(s) 54, 78, 103, 129, 176, 189
FauI CCCGC 1 cut(s) 20
Fnu4HI GCNGC 5 cut(s) 25, 47, 71, 96, 168
Fsp4HI GCNGC 5 cut(s) 25, 47, 71, 96, 168
GlaI GCGC 2 cut(s) 94, 119
GluI GCNGC 5 cut(s) 25, 47, 71, 96, 168
GsuI CTGGAG 1 cut(s) 156
HaeII RGCGCY 2 cut(s) 96, 121
HaeIII GGCC 1 cut(s) 196
HapII CCGG 3 cut(s) 51, 75, 100
HgaI GACGC 2 cut(s) 76, 173
HhaI GCGC 2 cut(s) 95, 120
Hin1I GRCGYC 1 cut(s) 165
Hin1II CATG 6 cut(s) 58, 82, 107, 133, 180, 193
Hin6I GCGC 2 cut(s) 93, 118
HinP1I GCGC 2 cut(s) 93, 118
HpaII CCGG 3 cut(s) 51, 75, 100
Hpy188I TCNGA 4 cut(s) 15, 89, 114, 127
Hpy188III TCNNGA 1 cut(s) 64
HpyCH4IV ACGT 1 cut(s) 19
HpyCH4V TGCA 1 cut(s) 209
HpyF10VI GCNNNNNNNGC 1 cut(s) 173
HpySE526I ACGT 1 cut(s) 19
Hsp92I GRCGYC 1 cut(s) 165
Hsp92II CATG 6 cut(s) 58, 82, 107, 133, 180, 193
HspAI GCGC 2 cut(s) 93, 118
LmnI GCTCC 1 cut(s) 175
LpnPI CCDG 8 cut(s) 64, 88, 113, 124, 137, 164, 186, 219
Lsp1109I GCAGC 4 cut(s) 11, 33, 57, 82
MaeII ACGT 1 cut(s) 19
MbiI CCGCTC 1 cut(s) 170
MboII GAAGA 1 cut(s) 136
MmeI TCCRAC 1 cut(s) 150
MnlI CCTC 4 cut(s) 83, 108, 220, 223
MseI TTAA 1 cut(s) 200
MspI CCGG 3 cut(s) 51, 75, 100
MspR9I CCNGG 4 cut(s) 51, 75, 100, 152
MvaI CCWGG 1 cut(s) 152
MwoI GCNNNNNNNGC 1 cut(s) 173
NciI CCSGG 3 cut(s) 51, 75, 100
NlaIII CATG 6 cut(s) 58, 82, 107, 133, 180, 193
NlaIV GGNNCC 1 cut(s) 195
NspI RCATGY 1 cut(s) 180
PflFI GACNNNGTC 1 cut(s) 131
PkrI GCNGC 5 cut(s) 26, 48, 72, 97, 169
Psp6I CCWGG 1 cut(s) 150
PspGI CCWGG 1 cut(s) 150
PspN4I GGNNCC 1 cut(s) 195
PspPI GGNCC 1 cut(s) 194
PsyI GACNNNGTC 1 cut(s) 131
SaqAI TTAA 1 cut(s) 200
SatI GCNGC 5 cut(s) 25, 47, 71, 96, 168
Sau96I GGNCC 1 cut(s) 194
ScrFI CCNGG 4 cut(s) 51, 75, 100, 152
SetI ASST 3 cut(s) 22, 153, 208
SsiI CCGC 2 cut(s) 27, 168
StyD4I CCNGG 4 cut(s) 49, 73, 98, 150
TaiI ACGT 1 cut(s) 22
TaqI TCGA 2 cut(s) 39, 147
TauI GCSGC 1 cut(s) 170
Tru1I TTAA 1 cut(s) 200
Tru9I TTAA 1 cut(s) 200
TseI GCWGC 4 cut(s) 24, 46, 70, 95
TspDTI ATGAA 1 cut(s) 17
Tth111I GACNNNGTC 1 cut(s) 131
XceI RCATGY 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.