Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0000649

Physical Location & Seq

Genomic Coordinates Forward (+)

10847042 .. 10851620

Gene Structure 4579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G100500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGGCGACTGAAGCACCAGAGCAAGCCCCCCAAGCTGATGGAGTCCAATCTCTTTCAATTTCCGAGGCTCCACCATCCAGCTCCTCAAATCCAACCATCCAAATGAGTTTGGAGGAGAAGTACCAGATTTTGAGGAGCGTGGCAGAGGAATGTATTCAGGAGGATGAGCTTCGGAATTTGCTGGCTCATAAGTCCGAACCCATCGCCTATGATGGGTTTGAACCCTCCGGTCGAATGCATATTGCTCAGGGAGTTATGAAGACGATAAATGTGAACAAGATGACCTCTGCTGGCTGCAGAGTGAAAATATGGATTGCAGATTGGTTTGCAATGCTAAACAATAAGATGGGGGGTGATTTGAAAAAGATAGAGACTGTTGGGCGCTACTTGATAGAGATATGGAGGGCTGCTGGGATGAATTTGGACAATGGAAAAGTTGAGTTTTTGTGGTCTTCAAAGGAGATTAATTCGAAAGCAGATGAGTACTGGCCTCGTGTGATGGACATAGCTCAAAAGAATAGTCTTAAAAGGATAATTAGATGTAGTCAGATAATGGGTCGAAATGAGCAAGAGGATTTAACTGCAGCCCAAATTCTCTACCCATGTATGCAATGTGCAGATATATTCTTCCTTAAGGCTGACATCTGCCAGTTGGGAATGGATCAACGCAAAGTGAATGTTCTTGCAAGAGAATATTGTGATGACATCAAGAAGAAGAACAAACCTATTATCCTGTCACACCACATGTTACCTGGTTTGCAACAAGGGCAGGAGAAGATGTCTAAAAGTGATGTATCATCCTCCATATTCATGGAAGATGAAGAGGCTGAAGTGAATTTGAAGATAAAGAAAGCTTACTGCCCTCCAAATGTTGTTGAAGGGAATCCATGCATGGAGTATGTGAAGTATCTCATCCTACCTTGGTTCAATGAGTTTATTGTAGAGCGCTCTGAAAAAAATGGCGGAAATAAGACCTTCAAAAGCTTTGAAGAATTGGCTGCTGATTATGAAAGTGGTGAGCTACATCCAGCTGACCTAAAATCAGCTTTATCAAAAGCATTGAACAAAATACTGGAGCCAGTACGGTCACACTTCAAGAATGACAAAACTGCCAAACAGCTATTGCAAAGTGTCAAGGTATTTTCTGGATTTTCTTTCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004812 GO:0004831 GO:0005488 GO:0005515 GO:0005524 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006437 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016597 GO:0016874 GO:0016875 GO:0017076 GO:0019538 GO:0019752 GO:0030554 GO:0031406 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034645 GO:0034660 GO:0035639 GO:0036094 GO:0042802 GO:0042803 GO:0043038 GO:0043039 GO:0043043 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043177 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0046483 GO:0046983 GO:0071704 GO:0072545 GO:0090304 GO:0097159 GO:0097367 GO:0140098 GO:0140101 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_1b

Protein Analysis

388

Amino Acids

43.84

Weight (kDa)

6.17

Isoelectric Point (pI)

54.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33840
fragaria_vesca	FvH4_2g00190 FvH4_4g18133 FvH4_4g36450 FvH4_5g02490 FvH4_5g35150 FvH4_6g35840
malus_domestica	MD04G1034100.v1.1 MD06G1084100.v1.1
prunus_persica	Prupe.2G139100_v2.0.a1 Prupe.5G096900_v2.0.a1 Prupe.5G096900_v2.0.a1 Prupe.5G100500_v2.0.a1 Prupe.5G100500_v2.0.a1 Prupe.5G100500_v2.0.a1
pyrus_communis	pycom04g02850
rosa_chinensis	RchiOBHm_Chr1g0324941 RchiOBHm_Chr1g0340751 RchiOBHm_Chr2g0133721 RchiOBHm_Chr2g0153921 RchiOBHm_Chr4g0396761 RchiOBHm_Chr4g0414291 RchiOBHm_Chr4g0429871 RchiOBHm_Chr4g0446211 RchiOBHm_Chr5g0057181 RchiOBHm_Chr5g0057391 RchiOBHm_Chr5g0077561 RchiOBHm_Chr6g0307121 RchiOBHm_Chr7g0197611
rosa_laevigata	RLG00000003922 RLG00000005681 RLG00000017313 RLG00000029149 RLG00000035152
rosa_multiflora	Rmu_co8043936.1_g000001 Rmu_sc0001164.1_g000009 Rmu_sc0001334.1_g000004 Rmu_sc0004952.1_g000011 Rmu_sc0013154.1_g000007 Rmu_sc0017650.1_g000006 Rmu_sc0018062.1_g000003
rosa_roxburghii	Rroxscaffold_1G00023030 Rroxscaffold_2G00094650 Rroxscaffold_3G00223000 Rroxscaffold_3G00232150 Rroxscaffold_3G00248030 Rroxscaffold_3G00248040 Rroxscaffold_3G00258320
rosa_rugosa	Rorug04G0184600 Rorug04G0368500 Rorug05G0306000 Rorug05G0307100 Rorug07G0041900
rosa_samantha	Rh2CG164400 Rh2DG389300 Rh3AG306800 Rh4AG430600 Rh4BG440000 Rh4CG457300 Rh4DG438500 Rh5AG375500 Rh5BG386300 Rh5CG409700 Rh5DG400300 Rh6CG481100 Rh7AG166300 Rh7AG360600 Rh7BG168400 Rh7CG174700 Rh7DG168000 Rh7DG387600
rosa_wichuraiana	Rw2G022790 Rw4G036780 Rw5G035320 Rw5G035460 Rw7G014480 Rw7G038030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	963
AclWI	GGATC	1 cut(s)	669
AcsI	RAATTY	4 cut(s)	175, 418, 591, 835
AcuI	CTGAAG	2 cut(s)	30, 849
AfaI	GTAC	3 cut(s)	122, 485, 1083
AfeI	AGCGCT	1 cut(s)	947
AfiI	CCNNNNNNNGG	1 cut(s)	213
AflII	CTTAAG	1 cut(s)	632
AflIII	ACRYGT	1 cut(s)	744
AjnI	CCWGG	1 cut(s)	751
Alw26I	GTCTC	1 cut(s)	365
AlwI	GGATC	1 cut(s)	669
Aor51HI	AGCGCT	1 cut(s)	947
AoxI	GGCC	1 cut(s)	488
ApeKI	GCWGC	4 cut(s)	294, 407, 584, 998
ApoI	RAATTY	4 cut(s)	175, 418, 591, 835
ArsI	GACNNNNNNTTYG	2 cut(s)	505, 537
AseI	ATTAAT	1 cut(s)	465
Asp700I	GAANNNNTTC	1 cut(s)	153
AspLEI	GCGC	2 cut(s)	384, 948
AsuHPI	GGTGA	2 cut(s)	365, 1028
AsuII	TTCGAA	1 cut(s)	470
BauI	CACGAG	1 cut(s)	492
BbsI	GAAGAC	2 cut(s)	266, 444
BbvI	GCAGC	4 cut(s)	281, 394, 596, 985
BccI	CCATC	7 cut(s)	32, 82, 104, 206, 209, 340, 493
BciT130I	CCWGG	1 cut(s)	753
BcoDI	GTCTC	1 cut(s)	365
BfmI	CTRYAG	2 cut(s)	295, 582
BfoI	RGCGCY	2 cut(s)	385, 949
BfrI	CTTAAG	1 cut(s)	632
BisI	GCNGC	4 cut(s)	295, 408, 585, 999
BlsI	GCNGC	4 cut(s)	296, 409, 586, 1000
BmcAI	AGTACT	1 cut(s)	485
Bme1390I	CCNGG	1 cut(s)	753
BmiI	GGNNCC	2 cut(s)	69, 1077
BmrFI	CCNGG	1 cut(s)	753
BpiI	GAAGAC	2 cut(s)	266, 444
BpmI	CTGGAG	1 cut(s)	1094
Bpu10I	CCTNAGC	1 cut(s)	246
Bpu14I	TTCGAA	1 cut(s)	470
BsaJI	CCNNGG	2 cut(s)	63, 920
BsaWI	WCCGGW	1 cut(s)	227
BsaXI	ACNNNNNCTCC	4 cut(s)	104, 134, 764, 794
Bsc4I	CCNNNNNNNGG	1 cut(s)	213
Bse1I	ACTGG	4 cut(s)	491, 649, 1077, 1079
Bse3DI	GCAATG	2 cut(s)	336, 617
BseBI	CCWGG	1 cut(s)	753
BseDI	CCNNGG	2 cut(s)	63, 920
BseGI	GGATG	7 cut(s)	74, 96, 169, 420, 797, 912, 1024
BseLI	CCNNNNNNNGG	1 cut(s)	213
BseMI	GCAATG	2 cut(s)	336, 617
BseMII	CTCAG	1 cut(s)	260
BseNI	ACTGG	4 cut(s)	491, 649, 1077, 1079
BseRI	GAGGAG	3 cut(s)	73, 128, 148
BseXI	GCAGC	4 cut(s)	281, 394, 596, 985
BseYI	CCCAGC	1 cut(s)	410
BsgI	GTGCAG	1 cut(s)	636
Bsh1285I	CGRYCG	1 cut(s)	232
BshFI	GGCC	1 cut(s)	490
BsiEI	CGRYCG	1 cut(s)	232
BsiSI	CCGG	1 cut(s)	228
BslI	CCNNNNNNNGG	1 cut(s)	213
BsmAI	GTCTC	1 cut(s)	365
BsmI	GAATGC	1 cut(s)	240
BsnI	GGCC	1 cut(s)	490
Bsp119I	TTCGAA	1 cut(s)	470
Bsp143I	GATC	1 cut(s)	661
BspACI	CCGC	1 cut(s)	963
BspANI	GGCC	1 cut(s)	490
BspCNI	CTCAG	1 cut(s)	259
BspLI	GGNNCC	2 cut(s)	69, 1077
BspMAI	CTGCAG	2 cut(s)	299, 586
BspPI	GGATC	1 cut(s)	669
BspT104I	TTCGAA	1 cut(s)	470
BspTI	CTTAAG	1 cut(s)	632
BsrDI	GCAATG	2 cut(s)	336, 617
BsrI	ACTGG	4 cut(s)	491, 649, 1077, 1079
BssECI	CCNNGG	2 cut(s)	63, 920
BssMI	GATC	1 cut(s)	661
BssSI	CACGAG	1 cut(s)	492
BssT1I	CCWWGG	1 cut(s)	920
Bst2BI	CACGAG	1 cut(s)	492
Bst2UI	CCWGG	1 cut(s)	753
Bst4CI	ACNGT	2 cut(s)	376, 1086
Bst6I	CTCTTC	1 cut(s)	816
BstAFI	CTTAAG	1 cut(s)	632
BstBI	TTCGAA	1 cut(s)	470
BstC8I	GCNNGC	3 cut(s)	24, 183, 292
BstDEI	CTNAG	1 cut(s)	246
BstF5I	GGATG	7 cut(s)	74, 96, 169, 420, 797, 912, 1024
BstH2I	RGCGCY	2 cut(s)	385, 949
BstHHI	GCGC	2 cut(s)	384, 948
BstKTI	GATC	1 cut(s)	664
BstMAI	GTCTC	1 cut(s)	365
BstMBI	GATC	1 cut(s)	661
BstMCI	CGRYCG	1 cut(s)	232
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 32, 766
BstNI	CCWGG	1 cut(s)	753
BstNSI	RCATGY	1 cut(s)	748
BstSCI	CCNGG	1 cut(s)	751
BstSFI	CTRYAG	2 cut(s)	295, 582
BstV1I	GCAGC	4 cut(s)	281, 394, 596, 985
BstV2I	GAAGAC	2 cut(s)	266, 444
BstXI	CCANNNNNNTGG	2 cut(s)	38, 811
BsuRI	GGCC	1 cut(s)	490
BtgZI	GCGATG	1 cut(s)	187
BtsCI	GGATG	7 cut(s)	74, 96, 169, 420, 797, 912, 1024
Cac8I	GCNNGC	3 cut(s)	24, 183, 292
CfoI	GCGC	2 cut(s)	384, 948
CsiI	ACCWGGT	1 cut(s)	751
Csp6I	GTAC	3 cut(s)	121, 484, 1082
CviAII	CATG	5 cut(s)	603, 745, 811, 888, 892
CviQI	GTAC	3 cut(s)	121, 484, 1082
DdeI	CTNAG	1 cut(s)	246
DpnI	GATC	1 cut(s)	663
DpnII	GATC	1 cut(s)	661
Eam1104I	CTCTTC	1 cut(s)	816
EarI	CTCTTC	1 cut(s)	816
EciI	GGCGGA	1 cut(s)	978
Eco130I	CCWWGG	1 cut(s)	920
Eco47III	AGCGCT	1 cut(s)	947
Eco57I	CTGAAG	2 cut(s)	30, 849
EcoRII	CCWGG	1 cut(s)	751
EcoT14I	CCWWGG	1 cut(s)	920
EcoT22I	ATGCAT	2 cut(s)	240, 893
ErhI	CCWWGG	1 cut(s)	920
FaeI	CATG	5 cut(s)	606, 748, 814, 891, 895
FatI	CATG	5 cut(s)	602, 744, 810, 887, 891
Fnu4HI	GCNGC	4 cut(s)	295, 408, 585, 999
FokI	GGATG	7 cut(s)	61, 83, 176, 427, 784, 899, 1011
Fsp4HI	GCNGC	4 cut(s)	295, 408, 585, 999
GlaI	GCGC	2 cut(s)	383, 947
GluI	GCNGC	4 cut(s)	295, 408, 585, 999
GsaI	CCCAGC	1 cut(s)	414
GsuI	CTGGAG	1 cut(s)	1094
HaeII	RGCGCY	2 cut(s)	385, 949
HaeIII	GGCC	1 cut(s)	490
HapII	CCGG	1 cut(s)	228
HhaI	GCGC	2 cut(s)	384, 948
Hin1II	CATG	5 cut(s)	606, 748, 814, 891, 895
Hin6I	GCGC	2 cut(s)	382, 946
HinP1I	GCGC	2 cut(s)	382, 946
HindIII	AAGCTT	2 cut(s)	852, 982
HinfI	GANTC	2 cut(s)	42, 883
HpaII	CCGG	1 cut(s)	228
HphI	GGTGA	2 cut(s)	365, 1028
Hpy166II	GTNNAC	1 cut(s)	274
Hpy188I	TCNGA	5 cut(s)	64, 174, 196, 549, 952
Hpy188III	TCNNGA	4 cut(s)	158, 709, 1096, 1146
Hpy8I	GTNNAC	1 cut(s)	274
HpyAV	CCTTC	2 cut(s)	872, 985
HpyCH4III	ACNGT	2 cut(s)	376, 1086
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 32, 766
HpyF3I	CTNAG	1 cut(s)	246
Hsp92II	CATG	5 cut(s)	606, 748, 814, 891, 895
HspAI	GCGC	2 cut(s)	382, 946
Kzo9I	GATC	1 cut(s)	661
LmnI	GCTCC	4 cut(s)	73, 86, 135, 1075
Lsp1109I	GCAGC	4 cut(s)	281, 394, 596, 985
MabI	ACCWGGT	1 cut(s)	751
MaeIII	GTNAC	3 cut(s)	735, 747, 1086
MalI	GATC	1 cut(s)	663
MboI	GATC	1 cut(s)	661
MluCI	AATT	8 cut(s)	57, 175, 418, 466, 534, 591, 835, 992
MlyI	GAGTC	1 cut(s)	51
MmeI	TCCRAC	1 cut(s)	116
Mph1103I	ATGCAT	2 cut(s)	240, 893
MroXI	GAANNNNTTC	1 cut(s)	153
MseI	TTAA	4 cut(s)	465, 525, 578, 633
MslI	CAYNNNNRTG	2 cut(s)	101, 809
MspA1I	CMGCKG	1 cut(s)	1031
MspCI	CTTAAG	1 cut(s)	632
MspI	CCGG	1 cut(s)	228
MspR9I	CCNGG	1 cut(s)	753
Mva1269I	GAATGC	1 cut(s)	240
MvaI	CCWGG	1 cut(s)	753
MwoI	GCNNNNNNNGC	3 cut(s)	11, 32, 766
NdeII	GATC	1 cut(s)	661
NlaIII	CATG	5 cut(s)	606, 748, 814, 891, 895
NlaIV	GGNNCC	2 cut(s)	69, 1077
NmuCI	GTSAC	2 cut(s)	735, 1086
NsiI	ATGCAT	2 cut(s)	240, 893
NspI	RCATGY	1 cut(s)	748
NspV	TTCGAA	1 cut(s)	470
PciI	ACATGT	1 cut(s)	744
PctI	GAATGC	1 cut(s)	240
PdmI	GAANNNNTTC	1 cut(s)	153
PfeI	GAWTC	1 cut(s)	883
PkrI	GCNGC	4 cut(s)	296, 409, 586, 1000
PleI	GAGTC	1 cut(s)	50
PpsI	GAGTC	1 cut(s)	50
PscI	ACATGT	1 cut(s)	744
PshBI	ATTAAT	1 cut(s)	465
Psp6I	CCWGG	1 cut(s)	751
PspFI	CCCAGC	1 cut(s)	410
PspGI	CCWGG	1 cut(s)	751
PspN4I	GGNNCC	2 cut(s)	69, 1077
PstI	CTGCAG	2 cut(s)	299, 586
PvuII	CAGCTG	1 cut(s)	1031
RsaI	GTAC	3 cut(s)	122, 485, 1083
RsaNI	GTAC	3 cut(s)	121, 484, 1082
RseI	CAYNNNNRTG	2 cut(s)	101, 809
SaqAI	TTAA	4 cut(s)	465, 525, 578, 633
SatI	GCNGC	4 cut(s)	295, 408, 585, 999
Sau3AI	GATC	1 cut(s)	661
ScaI	AGTACT	1 cut(s)	485
SchI	GAGTC	1 cut(s)	51
ScrFI	CCNGG	1 cut(s)	753
SexAI	ACCWGGT	1 cut(s)	751
SfcI	CTRYAG	2 cut(s)	295, 582
SfuI	TTCGAA	1 cut(s)	470
SmiMI	CAYNNNNRTG	2 cut(s)	101, 809
SmlI	CTYRAG	1 cut(s)	632
SmoI	CTYRAG	1 cut(s)	632
Sse9I	AATT	8 cut(s)	57, 175, 418, 466, 534, 591, 835, 992
SsiI	CCGC	1 cut(s)	963
SspI	AATATT	1 cut(s)	695
StyD4I	CCNGG	1 cut(s)	751
StyI	CCWWGG	1 cut(s)	920
TaaI	ACNGT	2 cut(s)	376, 1086
TaqI	TCGA	3 cut(s)	232, 470, 559
TasI	AATT	8 cut(s)	57, 175, 418, 466, 534, 591, 835, 992
TatI	WGTACW	1 cut(s)	483
TfiI	GAWTC	1 cut(s)	883
Tru1I	TTAA	4 cut(s)	465, 525, 578, 633
Tru9I	TTAA	4 cut(s)	465, 525, 578, 633
TseFI	GTSAC	2 cut(s)	735, 1086
TseI	GCWGC	4 cut(s)	294, 407, 584, 998
Tsp45I	GTSAC	2 cut(s)	735, 1086
TspDTI	ATGAA	5 cut(s)	272, 431, 799, 834, 1023
Vha464I	CTTAAG	1 cut(s)	632
VspI	ATTAAT	1 cut(s)	465
XapI	RAATTY	4 cut(s)	175, 418, 591, 835
XceI	RCATGY	1 cut(s)	748
XcmI	CCANNNNNNNNNTGG	1 cut(s)	749
XmnI	GAANNNNTTC	1 cut(s)	153
ZrmI	AGTACT	1 cut(s)	485
Zsp2I	ATGCAT	2 cut(s)	240, 893

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.