Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000649

Physical Location & Seq

Genomic Coordinates Reverse (-)

15154250 .. 15157872

Gene Structure 3623 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017313

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGAATCTGGACAGTGGGAAAGTTGAGTTTCTGTGGTCTTCTAAGGAGATCAATGCCAGGTCACATGAGTACTGGCCGCGTGTAATGGATATTGCCAGGAAAAACAAGCTTCCGAGGATCATTAGGTGTAGTCAAATTATGGGTCGAACGGATCAAGAAGAGTTAACAGCTGCCCAGATCCTCTACCCGTGTATGCAATGTGCAGATATTTTCTTCCTGCAGGCTGACATTTGTCAACTCAGTATGGATCAACGTAAAGTGAATGTGCTTGCACGAGAGTACTGTGATGACATCAAGAAGAAAAACAAGCCCATTATCTTGTCACACCGGGCTGATCTTTCCGATGCTGATCTAAGGGGTACAGACTTATCCTTGGCCAATGTGACAAAGGTAAATTTGAGCAATGCTAACTTGGAAGGTGCATTTACTACAGGCAACACATCTTTCAGAGGATCAACTGCCACTTCCAAAGAGGAGCACTCCAAAGTTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004812 GO:0004831 GO:0005488 GO:0005515 GO:0005524 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006437 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016597 GO:0016874 GO:0016875 GO:0017076 GO:0019538 GO:0019752 GO:0030554 GO:0031406 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034645 GO:0034660 GO:0035639 GO:0036094 GO:0042802 GO:0042803 GO:0043038 GO:0043039 GO:0043043 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043177 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0046483 GO:0046983 GO:0071704 GO:0072545 GO:0090304 GO:0097159 GO:0097367 GO:0140098 GO:0140101 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_1b

Protein Analysis

165

Amino Acids

18.53

Weight (kDa)

8.27

Isoelectric Point (pI)

23.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1b	PF00579	3 - 110	7.9e-19	tRNA synthetases class I (W and Y)
Pentapeptide	PF00805	110 - 141	4.2e-08	Pentapeptide repeats (8 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33840
fragaria_vesca	FvH4_2g00190 FvH4_4g18133 FvH4_4g36450 FvH4_5g02490 FvH4_5g35150 FvH4_6g35840
malus_domestica	MD04G1034100.v1.1 MD06G1084100.v1.1
prunus_persica	Prupe.2G139100_v2.0.a1 Prupe.5G096900_v2.0.a1 Prupe.5G096900_v2.0.a1 Prupe.5G100500_v2.0.a1 Prupe.5G100500_v2.0.a1 Prupe.5G100500_v2.0.a1
pyrus_communis	pycom04g02850
rosa_chinensis	RchiOBHm_Chr1g0324941 RchiOBHm_Chr1g0340751 RchiOBHm_Chr2g0133721 RchiOBHm_Chr2g0153921 RchiOBHm_Chr4g0396761 RchiOBHm_Chr4g0414291 RchiOBHm_Chr4g0429871 RchiOBHm_Chr4g0446211 RchiOBHm_Chr5g0057181 RchiOBHm_Chr5g0057391 RchiOBHm_Chr5g0077561 RchiOBHm_Chr6g0307121 RchiOBHm_Chr7g0197611
rosa_laevigata	RLG00000003922 RLG00000005681 RLG00000017313 RLG00000029149 RLG00000035152
rosa_multiflora	Rmu_co8043936.1_g000001 Rmu_sc0001164.1_g000009 Rmu_sc0001334.1_g000004 Rmu_sc0004952.1_g000011 Rmu_sc0013154.1_g000007 Rmu_sc0017650.1_g000006 Rmu_sc0018062.1_g000003
rosa_roxburghii	Rroxscaffold_1G00023030 Rroxscaffold_2G00094650 Rroxscaffold_3G00223000 Rroxscaffold_3G00232150 Rroxscaffold_3G00248030 Rroxscaffold_3G00248040 Rroxscaffold_3G00258320
rosa_rugosa	Rorug04G0184600 Rorug04G0368500 Rorug05G0306000 Rorug05G0307100 Rorug07G0041900
rosa_samantha	Rh2CG164400 Rh2DG389300 Rh3AG306800 Rh4AG430600 Rh4BG440000 Rh4CG457300 Rh4DG438500 Rh5AG375500 Rh5BG386300 Rh5CG409700 Rh5DG400300 Rh6CG481100 Rh7AG166300 Rh7AG360600 Rh7BG168400 Rh7CG174700 Rh7DG168000 Rh7DG387600
rosa_wichuraiana	Rw2G022790 Rw4G036780 Rw5G035320 Rw5G035460 Rw7G014480 Rw7G038030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	79
AciI	CCGC	1 cut(s)	77
AclWI	GGATC	5 cut(s)	125, 159, 172, 255, 460
AcoI	YGGCCR	2 cut(s)	74, 375
AcsI	RAATTY	1 cut(s)	394
AfaI	GTAC	3 cut(s)	71, 281, 361
AjnI	CCWGG	2 cut(s)	56, 95
AluBI	AGCT	2 cut(s)	109, 170
AluI	AGCT	2 cut(s)	109, 170
Alw21I	GWGCWC	1 cut(s)	480
AlwI	GGATC	5 cut(s)	125, 159, 172, 255, 460
AoxI	GGCC	2 cut(s)	74, 375
ApeKI	GCWGC	1 cut(s)	170
ApoI	RAATTY	1 cut(s)	394
ArsI	GACNNNNNNTTYG	2 cut(s)	127, 159
AsuC2I	CCSGG	1 cut(s)	329
BalI	TGGCCA	1 cut(s)	377
BauI	CACGAG	1 cut(s)	273
BbsI	GAAGAC	1 cut(s)	30
Bbv12I	GWGCWC	1 cut(s)	480
BbvI	GCAGC	1 cut(s)	157
BciT130I	CCWGG	2 cut(s)	58, 97
BcnI	CCSGG	1 cut(s)	329
BfmI	CTRYAG	2 cut(s)	218, 429
BisI	GCNGC	2 cut(s)	77, 171
BlsI	GCNGC	2 cut(s)	78, 172
BmcAI	AGTACT	2 cut(s)	71, 281
Bme1390I	CCNGG	3 cut(s)	58, 97, 329
BmrFI	CCNGG	3 cut(s)	58, 97, 329
BmsI	GCATC	1 cut(s)	334
BoxI	GACNNNNGTC	1 cut(s)	231
BpiI	GAAGAC	1 cut(s)	30
BplI	GAGNNNNNCTC	1 cut(s)	464
BpuMI	CCSGG	1 cut(s)	329
BsaBI	GATNNNNATC	1 cut(s)	348
BsaJI	CCNNGG	2 cut(s)	113, 372
Bse1I	ACTGG	1 cut(s)	77
Bse3DI	GCAATG	2 cut(s)	203, 409
Bse8I	GATNNNNATC	1 cut(s)	348
BseBI	CCWGG	2 cut(s)	58, 97
BseDI	CCNNGG	2 cut(s)	113, 372
BseJI	GATNNNNATC	1 cut(s)	348
BseMI	GCAATG	2 cut(s)	203, 409
BseMII	CTCAG	1 cut(s)	253
BseNI	ACTGG	1 cut(s)	77
BseRI	GAGGAG	1 cut(s)	488
BseXI	GCAGC	1 cut(s)	157
BsgI	GTGCAG	1 cut(s)	222
Bsh1236I	CGCG	1 cut(s)	79
BshFI	GGCC	2 cut(s)	76, 377
BsiHKAI	GWGCWC	1 cut(s)	480
BsiSI	CCGG	1 cut(s)	328
BsnI	GGCC	2 cut(s)	76, 377
Bsp1286I	GDGCHC	1 cut(s)	480
Bsp143I	GATC	8 cut(s)	48, 117, 151, 177, 247, 334, 349, 452
BspACI	CCGC	1 cut(s)	77
BspANI	GGCC	2 cut(s)	76, 377
BspCNI	CTCAG	1 cut(s)	252
BspFNI	CGCG	1 cut(s)	79
BspMAI	CTGCAG	1 cut(s)	222
BspPI	GGATC	5 cut(s)	125, 159, 172, 255, 460
BsrDI	GCAATG	2 cut(s)	203, 409
BsrI	ACTGG	1 cut(s)	77
BssECI	CCNNGG	2 cut(s)	113, 372
BssMI	GATC	8 cut(s)	48, 117, 151, 177, 247, 334, 349, 452
BssSI	CACGAG	1 cut(s)	273
BssT1I	CCWWGG	1 cut(s)	372
Bst2BI	CACGAG	1 cut(s)	273
Bst2UI	CCWGG	2 cut(s)	58, 97
Bst4CI	ACNGT	2 cut(s)	14, 284
Bst6I	CTCTTC	1 cut(s)	153
BstC8I	GCNNGC	2 cut(s)	222, 270
BstDEI	CTNAG	3 cut(s)	42, 239, 353
BstFNI	CGCG	1 cut(s)	79
BstKTI	GATC	8 cut(s)	51, 120, 154, 180, 250, 337, 352, 455
BstMBI	GATC	8 cut(s)	48, 117, 151, 177, 247, 334, 349, 452
BstNI	CCWGG	2 cut(s)	58, 97
BstPAI	GACNNNNGTC	1 cut(s)	231
BstSCI	CCNGG	3 cut(s)	56, 95, 327
BstSFI	CTRYAG	2 cut(s)	218, 429
BstUI	CGCG	1 cut(s)	79
BstV1I	GCAGC	1 cut(s)	157
BstV2I	GAAGAC	1 cut(s)	30
BstX2I	RGATCY	1 cut(s)	177
BstYI	RGATCY	1 cut(s)	177
BsuRI	GGCC	2 cut(s)	76, 377
BtsIMutI	CAGTG	1 cut(s)	19
Cac8I	GCNNGC	2 cut(s)	222, 270
Csp6I	GTAC	3 cut(s)	70, 280, 360
CviAII	CATG	1 cut(s)	65
CviJI	RGCY	7 cut(s)	76, 109, 170, 224, 310, 332, 377
CviKI_1	RGCY	7 cut(s)	76, 109, 170, 224, 310, 332, 377
CviQI	GTAC	3 cut(s)	70, 280, 360
DdeI	CTNAG	3 cut(s)	42, 239, 353
DpnI	GATC	8 cut(s)	50, 119, 153, 179, 249, 336, 351, 454
DpnII	GATC	8 cut(s)	48, 117, 151, 177, 247, 334, 349, 452
EaeI	YGGCCR	2 cut(s)	74, 375
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
Eco130I	CCWWGG	1 cut(s)	372
EcoRII	CCWGG	2 cut(s)	56, 95
EcoT14I	CCWWGG	1 cut(s)	372
ErhI	CCWWGG	1 cut(s)	372
FaeI	CATG	1 cut(s)	68
FaiI	YATR	4 cut(s)	66, 140, 194, 245
FatI	CATG	1 cut(s)	64
Fnu4HI	GCNGC	2 cut(s)	77, 171
Fsp4HI	GCNGC	2 cut(s)	77, 171
GluI	GCNGC	2 cut(s)	77, 171
HaeIII	GGCC	2 cut(s)	76, 377
HapII	CCGG	1 cut(s)	328
Hin1II	CATG	1 cut(s)	68
HincII	GTYRAC	2 cut(s)	165, 236
HindII	GTYRAC	2 cut(s)	165, 236
HindIII	AAGCTT	1 cut(s)	107
HinfI	GANTC	1 cut(s)	4
HpaI	GTTAAC	1 cut(s)	165
HpaII	CCGG	1 cut(s)	328
Hpy166II	GTNNAC	2 cut(s)	165, 236
Hpy188I	TCNGA	3 cut(s)	114, 343, 449
Hpy188III	TCNNGA	3 cut(s)	8, 155, 295
Hpy8I	GTNNAC	2 cut(s)	165, 236
HpyAV	CCTTC	1 cut(s)	410
HpyCH4III	ACNGT	2 cut(s)	14, 284
HpyCH4IV	ACGT	1 cut(s)	253
HpyCH4V	TGCA	5 cut(s)	196, 203, 220, 272, 422
HpyF3I	CTNAG	3 cut(s)	42, 239, 353
HpySE526I	ACGT	1 cut(s)	253
Hsp92II	CATG	1 cut(s)	68
KspAI	GTTAAC	1 cut(s)	165
Kzo9I	GATC	8 cut(s)	48, 117, 151, 177, 247, 334, 349, 452
LmnI	GCTCC	1 cut(s)	475
Lsp1109I	GCAGC	1 cut(s)	157
LweI	GCATC	1 cut(s)	334
MaeII	ACGT	1 cut(s)	253
MaeIII	GTNAC	3 cut(s)	60, 321, 382
MalI	GATC	8 cut(s)	50, 119, 153, 179, 249, 336, 351, 454
MboI	GATC	8 cut(s)	48, 117, 151, 177, 247, 334, 349, 452
MboII	GAAGA	4 cut(s)	30, 170, 205, 310
MflI	RGATCY	1 cut(s)	177
MhlI	GDGCHC	1 cut(s)	480
MlsI	TGGCCA	1 cut(s)	377
MluCI	AATT	2 cut(s)	135, 394
MluNI	TGGCCA	1 cut(s)	377
MnlI	CCTC	4 cut(s)	108, 191, 443, 466
Mox20I	TGGCCA	1 cut(s)	377
MscI	TGGCCA	1 cut(s)	377
MseI	TTAA	1 cut(s)	164
Msp20I	TGGCCA	1 cut(s)	377
MspA1I	CMGCKG	1 cut(s)	170
MspI	CCGG	1 cut(s)	328
MspR9I	CCNGG	3 cut(s)	58, 97, 329
MvaI	CCWGG	2 cut(s)	58, 97
MvnI	CGCG	1 cut(s)	79
NciI	CCSGG	1 cut(s)	329
NdeII	GATC	8 cut(s)	48, 117, 151, 177, 247, 334, 349, 452
NlaIII	CATG	1 cut(s)	68
NmuCI	GTSAC	3 cut(s)	60, 321, 382
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	2 cut(s)	78, 172
PshAI	GACNNNNGTC	1 cut(s)	231
Psp6I	CCWGG	2 cut(s)	56, 95
PspGI	CCWGG	2 cut(s)	56, 95
PstI	CTGCAG	1 cut(s)	222
PsuI	RGATCY	1 cut(s)	177
PvuII	CAGCTG	1 cut(s)	170
RsaI	GTAC	3 cut(s)	71, 281, 361
RsaNI	GTAC	3 cut(s)	70, 280, 360
SaqAI	TTAA	1 cut(s)	164
SatI	GCNGC	2 cut(s)	77, 171
Sau3AI	GATC	8 cut(s)	48, 117, 151, 177, 247, 334, 349, 452
SbfI	CCTGCAGG	1 cut(s)	222
ScaI	AGTACT	2 cut(s)	71, 281
ScrFI	CCNGG	3 cut(s)	58, 97, 329
SdaI	CCTGCAGG	1 cut(s)	222
SduI	GDGCHC	1 cut(s)	480
SetI	ASST	7 cut(s)	62, 111, 128, 172, 256, 393, 421
SfaNI	GCATC	1 cut(s)	334
SfcI	CTRYAG	2 cut(s)	218, 429
Sse8387I	CCTGCAGG	1 cut(s)	222
Sse9I	AATT	2 cut(s)	135, 394
SsiI	CCGC	1 cut(s)	77
StyD4I	CCNGG	3 cut(s)	56, 95, 327
StyI	CCWWGG	1 cut(s)	372
TaaI	ACNGT	2 cut(s)	14, 284
TaiI	ACGT	1 cut(s)	256
TaqI	TCGA	1 cut(s)	145
TasI	AATT	2 cut(s)	135, 394
TatI	WGTACW	2 cut(s)	69, 279
TauI	GCSGC	1 cut(s)	79
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	1 cut(s)	164
Tru9I	TTAA	1 cut(s)	164
TscAI	CASTG	1 cut(s)	19
TseFI	GTSAC	3 cut(s)	60, 321, 382
TseI	GCWGC	1 cut(s)	170
Tsp45I	GTSAC	3 cut(s)	60, 321, 382
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	164
TspRI	CASTG	1 cut(s)	19
XapI	RAATTY	1 cut(s)	394
ZrmI	AGTACT	2 cut(s)	71, 281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.