Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013154.1

Orthogroup ID

OG0000649

Physical Location & Seq

Genomic Coordinates Forward (+)

27586 .. 29569

Gene Structure 1984 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013154.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

atgtgcttcatcttttctatcatacttgttgacctgaacttcccttcttctgcttcctcggcgccgccgctgctcttgccttctcctttaagttctcctcgatctctgatccctcaaagcaatgggggagatttgaagaagactgagactgtggggaagtattttattgagatatggagattagtggggatgaatctggacagcgggaaagttgagaccaatgccaaatcacatgagtattggccttgtgtaatggatattgcaaggaaaaataagcttccgaggatcattaggtgtagtcaaattatgggtcgaacggatcaagaagagttagttgtagtccagatcctctacccgtgtatgcaatgcggatggtattggttttggttgatcgagaagaagaagaagaaggtagtgaaggacagcagctgcagtcaaagttccagagtttcaaatttaggattcggtgaagcctgcagcattgattttctctatgagtttgaaactgctacagagacactgctgtcaggatttgagaaagcaaaattgtcgctgctacagtatgggaaggcctgctgctgggatttgagagcgaaaggcctacaccggagacgctgctctaatatgttcatcgggacgctgcccggcatggtcatcgggaccttgcccggaatggttcatcgagatgttgcccgacatgttcattggagacgttgctctggcatgttgtctttgacatcattgacacccgaaggtgccgttgtgaggagggcctacaatagaaaagaaaaggtggtggaaagcgatggaatgaggtctgaaccttttgtcttccaacctgctttgctgccttctccttcttgtttttccacgctgctgtgccttgttgtcctcctcttttttcttttcatgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004812 GO:0004831 GO:0005488 GO:0005515 GO:0005524 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006437 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016597 GO:0016874 GO:0016875 GO:0017076 GO:0019538 GO:0019752 GO:0030554 GO:0031406 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034645 GO:0034660 GO:0035639 GO:0036094 GO:0042802 GO:0042803 GO:0043038 GO:0043039 GO:0043043 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043177 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0046483 GO:0046983 GO:0071704 GO:0072545 GO:0090304 GO:0097159 GO:0097367 GO:0140098 GO:0140101 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_1b

Protein Analysis

304

Amino Acids

34.37

Weight (kDa)

9.16

Isoelectric Point (pI)

56.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33840
fragaria_vesca	FvH4_2g00190 FvH4_4g18133 FvH4_4g36450 FvH4_5g02490 FvH4_5g35150 FvH4_6g35840
malus_domestica	MD04G1034100.v1.1 MD06G1084100.v1.1
prunus_persica	Prupe.2G139100_v2.0.a1 Prupe.5G096900_v2.0.a1 Prupe.5G096900_v2.0.a1 Prupe.5G100500_v2.0.a1 Prupe.5G100500_v2.0.a1 Prupe.5G100500_v2.0.a1
pyrus_communis	pycom04g02850
rosa_chinensis	RchiOBHm_Chr1g0324941 RchiOBHm_Chr1g0340751 RchiOBHm_Chr2g0133721 RchiOBHm_Chr2g0153921 RchiOBHm_Chr4g0396761 RchiOBHm_Chr4g0414291 RchiOBHm_Chr4g0429871 RchiOBHm_Chr4g0446211 RchiOBHm_Chr5g0057181 RchiOBHm_Chr5g0057391 RchiOBHm_Chr5g0077561 RchiOBHm_Chr6g0307121 RchiOBHm_Chr7g0197611
rosa_laevigata	RLG00000003922 RLG00000005681 RLG00000017313 RLG00000029149 RLG00000035152
rosa_multiflora	Rmu_co8043936.1_g000001 Rmu_sc0001164.1_g000009 Rmu_sc0001334.1_g000004 Rmu_sc0004952.1_g000011 Rmu_sc0013154.1_g000007 Rmu_sc0017650.1_g000006 Rmu_sc0018062.1_g000003
rosa_roxburghii	Rroxscaffold_1G00023030 Rroxscaffold_2G00094650 Rroxscaffold_3G00223000 Rroxscaffold_3G00232150 Rroxscaffold_3G00248030 Rroxscaffold_3G00248040 Rroxscaffold_3G00258320
rosa_rugosa	Rorug04G0184600 Rorug04G0368500 Rorug05G0306000 Rorug05G0307100 Rorug07G0041900
rosa_samantha	Rh2CG164400 Rh2DG389300 Rh3AG306800 Rh4AG430600 Rh4BG440000 Rh4CG457300 Rh4DG438500 Rh5AG375500 Rh5BG386300 Rh5CG409700 Rh5DG400300 Rh6CG481100 Rh7AG166300 Rh7AG360600 Rh7BG168400 Rh7CG174700 Rh7DG168000 Rh7DG387600
rosa_wichuraiana	Rw2G022790 Rw4G036780 Rw5G035320 Rw5G035460 Rw7G014480 Rw7G038030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	523
Acc36I	ACCTGC	1 cut(s)	847
AccB1I	GGYRCC	2 cut(s)	61, 755
AciI	CCGC	4 cut(s)	65, 68, 204, 369
AclWI	GGATC	4 cut(s)	103, 293, 327, 340
AcsI	RAATTY	1 cut(s)	454
AcyI	GRCGYC	1 cut(s)	62
AfiI	CCNNNNNNNGG	2 cut(s)	579, 765
AflIII	ACRYGT	1 cut(s)	697
AgsI	TTSAA	3 cut(s)	136, 453, 503
AluBI	AGCT	2 cut(s)	277, 429
AluI	AGCT	2 cut(s)	277, 429
Alw26I	GTCTC	5 cut(s)	140, 209, 509, 604, 703
AlwI	GGATC	4 cut(s)	103, 293, 327, 340
AlwNI	CAGNNNCTG	1 cut(s)	429
AoxI	GGCC	4 cut(s)	242, 570, 598, 771
ApoI	RAATTY	1 cut(s)	454
ArsI	GACNNNNNNTTYG	2 cut(s)	295, 327
AspLEI	GCGC	1 cut(s)	64
AspS9I	GGNCC	2 cut(s)	660, 771
AsuC2I	CCSGG	2 cut(s)	645, 669
AsuHPI	GGTGA	1 cut(s)	479
AvaII	GGWCC	1 cut(s)	660
BanI	GGYRCC	2 cut(s)	61, 755
BbsI	GAAGAC	2 cut(s)	146, 823
BccI	CCATC	2 cut(s)	366, 800
BceAI	ACGGC	1 cut(s)	743
BcgI	CGANNNNNNTGC	4 cut(s)	531, 565, 637, 671
BcnI	CCSGG	2 cut(s)	645, 669
BcoDI	GTCTC	5 cut(s)	140, 209, 509, 604, 703
BfmI	CTRYAG	4 cut(s)	430, 475, 510, 557
BfoI	RGCGCY	1 cut(s)	65
BfuAI	ACCTGC	1 cut(s)	847
Bme1390I	CCNGG	2 cut(s)	645, 669
Bme18I	GGWCC	1 cut(s)	660
BmgT120I	GGNCC	2 cut(s)	660, 771
BmiI	GGNNCC	3 cut(s)	63, 661, 757
BmrFI	CCNGG	2 cut(s)	645, 669
BpiI	GAAGAC	2 cut(s)	146, 823
BpuMI	CCSGG	2 cut(s)	645, 669
BsaHI	GRCGYC	1 cut(s)	62
BsaI	GGTCTC	1 cut(s)	209
BsaJI	CCNNGG	2 cut(s)	57, 281
BsaWI	WCCGGW	1 cut(s)	606
Bsc4I	CCNNNNNNNGG	2 cut(s)	579, 765
Bse3DI	GCAATG	2 cut(s)	127, 371
BseDI	CCNNGG	2 cut(s)	57, 281
BseGI	GGATG	2 cut(s)	195, 377
BseLI	CCNNNNNNNGG	2 cut(s)	579, 765
BseMI	GCAATG	2 cut(s)	127, 371
BseMII	CTCAG	1 cut(s)	135
BseRI	GAGGAG	3 cut(s)	87, 781, 884
BseYI	CCCAGC	1 cut(s)	579
BshFI	GGCC	4 cut(s)	244, 572, 600, 773
BshNI	GGYRCC	2 cut(s)	61, 755
BsiSI	CCGG	3 cut(s)	607, 645, 669
BslFI	GGGAC	2 cut(s)	649, 673
BslI	CCNNNNNNNGG	2 cut(s)	579, 765
BsmAI	GTCTC	5 cut(s)	140, 209, 509, 604, 703
BsmBI	CGTCTC	2 cut(s)	604, 703
BsmFI	GGGAC	2 cut(s)	649, 673
BsnI	GGCC	4 cut(s)	244, 572, 600, 773
Bso31I	GGTCTC	1 cut(s)	209
Bsp143I	GATC	6 cut(s)	101, 108, 285, 319, 345, 390
BspACI	CCGC	4 cut(s)	65, 68, 204, 369
BspANI	GGCC	4 cut(s)	244, 572, 600, 773
BspCNI	CTCAG	1 cut(s)	136
BspLI	GGNNCC	3 cut(s)	63, 661, 757
BspMAI	CTGCAG	2 cut(s)	434, 479
BspMI	ACCTGC	1 cut(s)	847
BspPI	GGATC	4 cut(s)	103, 293, 327, 340
BspT107I	GGYRCC	2 cut(s)	61, 755
BspTNI	GGTCTC	1 cut(s)	209
BsrDI	GCAATG	2 cut(s)	127, 371
BssECI	CCNNGG	2 cut(s)	57, 281
BssMI	GATC	6 cut(s)	101, 108, 285, 319, 345, 390
BssNI	GRCGYC	1 cut(s)	62
Bst4CI	ACNGT	2 cut(s)	151, 561
Bst6I	CTCTTC	1 cut(s)	321
BstACI	GRCGYC	1 cut(s)	62
BstC8I	GCNNGC	2 cut(s)	475, 574
BstDEI	CTNAG	1 cut(s)	144
BstF5I	GGATG	2 cut(s)	195, 377
BstH2I	RGCGCY	1 cut(s)	65
BstHHI	GCGC	1 cut(s)	64
BstKTI	GATC	6 cut(s)	104, 111, 288, 322, 348, 393
BstMAI	GTCTC	5 cut(s)	140, 209, 509, 604, 703
BstMBI	GATC	6 cut(s)	101, 108, 285, 319, 345, 390
BstMWI	GCNNNNNNNGC	3 cut(s)	59, 70, 76
BstNSI	RCATGY	2 cut(s)	701, 727
BstSCI	CCNGG	2 cut(s)	643, 667
BstSFI	CTRYAG	4 cut(s)	430, 475, 510, 557
BstV2I	GAAGAC	2 cut(s)	146, 823
BstX2I	RGATCY	1 cut(s)	345
BstYI	RGATCY	1 cut(s)	345
BsuRI	GGCC	4 cut(s)	244, 572, 600, 773
BtgZI	GCGATG	1 cut(s)	819
BtsCI	GGATG	2 cut(s)	195, 377
BtsI	GCAGTG	1 cut(s)	518
BtsIMutI	CAGTG	1 cut(s)	518
BveI	ACCTGC	1 cut(s)	847
Cac8I	GCNNGC	2 cut(s)	475, 574
CaiI	CAGNNNCTG	1 cut(s)	429
CfoI	GCGC	1 cut(s)	64
Cfr13I	GGNCC	2 cut(s)	660, 771
CseI	GACGC	2 cut(s)	621, 646
CviAII	CATG	5 cut(s)	233, 649, 698, 724, 910
CviJI	RGCY	7 cut(s)	244, 277, 429, 473, 572, 600, 773
CviKI_1	RGCY	7 cut(s)	244, 277, 429, 473, 572, 600, 773
DdeI	CTNAG	1 cut(s)	144
DinI	GGCGCC	1 cut(s)	63
DpnI	GATC	6 cut(s)	103, 110, 287, 321, 347, 392
DpnII	GATC	6 cut(s)	101, 108, 285, 319, 345, 390
DrdI	GACNNNNNNGTC	1 cut(s)	523
DseDI	GACNNNNNNGTC	1 cut(s)	523
Eam1104I	CTCTTC	1 cut(s)	321
EarI	CTCTTC	1 cut(s)	321
Eco147I	AGGCCT	2 cut(s)	572, 600
Eco31I	GGTCTC	1 cut(s)	209
Eco47I	GGWCC	1 cut(s)	660
EcoO109I	RGGNCCY	2 cut(s)	660, 771
EgeI	GGCGCC	1 cut(s)	63
EheI	GGCGCC	1 cut(s)	63
Esp3I	CGTCTC	2 cut(s)	604, 703
FaeI	CATG	5 cut(s)	236, 652, 701, 727, 913
FaqI	GGGAC	2 cut(s)	649, 673
FatI	CATG	5 cut(s)	232, 648, 697, 723, 909
FauI	CCCGC	1 cut(s)	197
FokI	GGATG	2 cut(s)	202, 384
GlaI	GCGC	1 cut(s)	63
GsaI	CCCAGC	1 cut(s)	583
HaeII	RGCGCY	1 cut(s)	65
HaeIII	GGCC	4 cut(s)	244, 572, 600, 773
HapII	CCGG	3 cut(s)	607, 645, 669
HgaI	GACGC	2 cut(s)	621, 646
HhaI	GCGC	1 cut(s)	64
Hin1I	GRCGYC	1 cut(s)	62
Hin1II	CATG	5 cut(s)	236, 652, 701, 727, 913
Hin6I	GCGC	1 cut(s)	62
HinP1I	GCGC	1 cut(s)	62
HincII	GTYRAC	1 cut(s)	31
HindII	GTYRAC	1 cut(s)	31
HindIII	AAGCTT	1 cut(s)	275
HinfI	GANTC	2 cut(s)	193, 462
HpaII	CCGG	3 cut(s)	607, 645, 669
HphI	GGTGA	1 cut(s)	479
Hpy166II	GTNNAC	1 cut(s)	31
Hpy188I	TCNGA	3 cut(s)	108, 282, 820
Hpy188III	TCNNGA	9 cut(s)	197, 323, 343, 394, 444, 528, 634, 658, 683
Hpy8I	GTNNAC	1 cut(s)	31
HpyAV	CCTTC	8 cut(s)	54, 90, 403, 412, 562, 746, 861, 867
HpyCH4III	ACNGT	2 cut(s)	151, 561
HpyCH4IV	ACGT	1 cut(s)	712
HpyCH4V	TGCA	4 cut(s)	263, 364, 432, 477
HpyF10VI	GCNNNNNNNGC	3 cut(s)	59, 70, 76
HpyF3I	CTNAG	1 cut(s)	144
HpySE526I	ACGT	1 cut(s)	712
Hsp92I	GRCGYC	1 cut(s)	62
Hsp92II	CATG	5 cut(s)	236, 652, 701, 727, 913
HspAI	GCGC	1 cut(s)	62
KasI	GGCGCC	1 cut(s)	61
Kzo9I	GATC	6 cut(s)	101, 108, 285, 319, 345, 390
MaeII	ACGT	1 cut(s)	712
MalI	GATC	6 cut(s)	103, 110, 287, 321, 347, 392
MboI	GATC	6 cut(s)	101, 108, 285, 319, 345, 390
MboII	GAAGA	9 cut(s)	39, 148, 151, 338, 409, 412, 415, 418, 823
MflI	RGATCY	1 cut(s)	345
MluCI	AATT	3 cut(s)	303, 454, 545
Mly113I	GGCGCC	1 cut(s)	62
MmeI	TCCRAC	1 cut(s)	859
MseI	TTAA	1 cut(s)	89
MslI	CAYNNNNRTG	1 cut(s)	684
MspA1I	CMGCKG	3 cut(s)	70, 204, 429
MspI	CCGG	3 cut(s)	607, 645, 669
MspR9I	CCNGG	2 cut(s)	645, 669
MwoI	GCNNNNNNNGC	3 cut(s)	59, 70, 76
NarI	GGCGCC	1 cut(s)	62
NciI	CCSGG	2 cut(s)	645, 669
NdeII	GATC	6 cut(s)	101, 108, 285, 319, 345, 390
NlaIII	CATG	5 cut(s)	236, 652, 701, 727, 913
NlaIV	GGNNCC	3 cut(s)	63, 661, 757
NmeAIII	GCCGAG	1 cut(s)	38
NspI	RCATGY	2 cut(s)	701, 727
PceI	AGGCCT	2 cut(s)	572, 600
PciI	ACATGT	1 cut(s)	697
PfeI	GAWTC	2 cut(s)	193, 462
PluTI	GGCGCC	1 cut(s)	65
PpuMI	RGGWCCY	1 cut(s)	660
PscI	ACATGT	1 cut(s)	697
Psp5II	RGGWCCY	1 cut(s)	660
PspFI	CCCAGC	1 cut(s)	579
PspN4I	GGNNCC	3 cut(s)	63, 661, 757
PspPI	GGNCC	2 cut(s)	660, 771
PspPPI	RGGWCCY	1 cut(s)	660
PstI	CTGCAG	2 cut(s)	434, 479
PstNI	CAGNNNCTG	1 cut(s)	429
PsuI	RGATCY	1 cut(s)	345
PvuII	CAGCTG	1 cut(s)	429
RseI	CAYNNNNRTG	1 cut(s)	684
SaqAI	TTAA	1 cut(s)	89
Sau3AI	GATC	6 cut(s)	101, 108, 285, 319, 345, 390
Sau96I	GGNCC	2 cut(s)	660, 771
ScrFI	CCNGG	2 cut(s)	645, 669
SfcI	CTRYAG	4 cut(s)	430, 475, 510, 557
SfoI	GGCGCC	1 cut(s)	63
SinI	GGWCC	1 cut(s)	660
SmiMI	CAYNNNNRTG	1 cut(s)	684
Sse9I	AATT	3 cut(s)	303, 454, 545
SseBI	AGGCCT	2 cut(s)	572, 600
SsiI	CCGC	4 cut(s)	65, 68, 204, 369
SspDI	GGCGCC	1 cut(s)	61
StuI	AGGCCT	2 cut(s)	572, 600
StyD4I	CCNGG	2 cut(s)	643, 667
TaaI	ACNGT	2 cut(s)	151, 561
TaiI	ACGT	1 cut(s)	715
TaqI	TCGA	4 cut(s)	100, 313, 393, 682
TasI	AATT	3 cut(s)	303, 454, 545
TauI	GCSGC	2 cut(s)	67, 70
TfiI	GAWTC	2 cut(s)	193, 462
Tru1I	TTAA	1 cut(s)	89
Tru9I	TTAA	1 cut(s)	89
TscAI	CASTG	1 cut(s)	525
TspDTI	ATGAA	5 cut(s)	206, 619, 668, 692, 898
TspGWI	ACGGA	1 cut(s)	332
TspRI	CASTG	1 cut(s)	525
VpaK11BI	GGWCC	1 cut(s)	660
XapI	RAATTY	1 cut(s)	454
XceI	RCATGY	2 cut(s)	701, 727

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.