Rroxscaffold_2G00094650

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000649
Physical Location & Seq
Forward (+)
16047222 .. 16048599
1378 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00094650.1

Sequence Viewer

Length: 276 bp
ATGTTCATCGGGACGCTGCCCGGCATGTTGTCTTTGACATCATTGACACCTGGAGGTGCCGTTGTGGGGAGGGCCTGCAACAGAAAAGAAAAGGTGGTGGAGAGCGATGGAATGAGGTCTGAACCTTTTGTCTTCCAAGCTCCTTTACTGCTTTCTTCTTCTGCTTTTCCACCTCTACTGTGCTCCGTTGCGTCCTCTCCTTTTCTGCACTTCATGTGGTGCTTATATACTACACTCGAGATGAGTTTGGCTTGCATACAAGATAGAGAGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

9.93

Weight (kDa)

5.64

Isoelectric Point (pI)

57.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000649)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33840
fragaria_vesca FvH4_2g00190 FvH4_4g18133 FvH4_4g36450 FvH4_5g02490 FvH4_5g35150 FvH4_6g35840
malus_domestica MD04G1034100.v1.1 MD06G1084100.v1.1
prunus_persica Prupe.2G139100_v2.0.a1 Prupe.5G096900_v2.0.a1 Prupe.5G096900_v2.0.a1 Prupe.5G100500_v2.0.a1 Prupe.5G100500_v2.0.a1 Prupe.5G100500_v2.0.a1
pyrus_communis pycom04g02850
rosa_chinensis RchiOBHm_Chr1g0324941 RchiOBHm_Chr1g0340751 RchiOBHm_Chr2g0133721 RchiOBHm_Chr2g0153921 RchiOBHm_Chr4g0396761 RchiOBHm_Chr4g0414291 RchiOBHm_Chr4g0429871 RchiOBHm_Chr4g0446211 RchiOBHm_Chr5g0057181 RchiOBHm_Chr5g0057391 RchiOBHm_Chr5g0077561 RchiOBHm_Chr6g0307121 RchiOBHm_Chr7g0197611
rosa_laevigata RLG00000003922 RLG00000005681 RLG00000017313 RLG00000029149 RLG00000035152
rosa_multiflora Rmu_co8043936.1_g000001 Rmu_sc0001164.1_g000009 Rmu_sc0001334.1_g000004 Rmu_sc0004952.1_g000011 Rmu_sc0013154.1_g000007 Rmu_sc0017650.1_g000006 Rmu_sc0018062.1_g000003
rosa_roxburghii Rroxscaffold_1G00023030 Rroxscaffold_2G00094650 Rroxscaffold_3G00223000 Rroxscaffold_3G00232150 Rroxscaffold_3G00248030 Rroxscaffold_3G00248040 Rroxscaffold_3G00258320
rosa_rugosa Rorug04G0184600 Rorug04G0368500 Rorug05G0306000 Rorug05G0307100 Rorug07G0041900
rosa_samantha Rh2CG164400 Rh2DG389300 Rh3AG306800 Rh4AG430600 Rh4BG440000 Rh4CG457300 Rh4DG438500 Rh5AG375500 Rh5BG386300 Rh5CG409700 Rh5DG400300 Rh6CG481100 Rh7AG166300 Rh7AG360600 Rh7BG168400 Rh7CG174700 Rh7DG168000 Rh7DG387600
rosa_wichuraiana Rw2G022790 Rw4G036780 Rw5G035320 Rw5G035460 Rw7G014480 Rw7G038030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 56
AfiI CCNNNNNNNGG 1 cut(s) 66
AjnI CCWGG 1 cut(s) 49
AluBI AGCT 1 cut(s) 140
AluI AGCT 1 cut(s) 140
Alw21I GWGCWC 1 cut(s) 185
Ama87I CYCGRG 1 cut(s) 236
AoxI GGCC 1 cut(s) 72
ApeKI GCWGC 1 cut(s) 16
AspS9I GGNCC 1 cut(s) 72
AsuC2I CCSGG 1 cut(s) 21
AvaI CYCGRG 1 cut(s) 236
BanI GGYRCC 1 cut(s) 56
BbsI GAAGAC 1 cut(s) 124
Bbv12I GWGCWC 1 cut(s) 185
BbvI GCAGC 1 cut(s) 3
BccI CCATC 1 cut(s) 101
BceAI ACGGC 1 cut(s) 44
BciT130I CCWGG 1 cut(s) 51
BcnI CCSGG 1 cut(s) 21
BisI GCNGC 1 cut(s) 17
BlsI GCNGC 1 cut(s) 18
Bme1390I CCNGG 2 cut(s) 21, 51
BmeT110I CYCGRG 1 cut(s) 236
BmgT120I GGNCC 1 cut(s) 72
BmiI GGNNCC 1 cut(s) 58
BmrFI CCNGG 2 cut(s) 21, 51
BpiI GAAGAC 1 cut(s) 124
BpmI CTGGAG 1 cut(s) 72
BpuMI CCSGG 1 cut(s) 21
BsaXI ACNNNNNCTCC 2 cut(s) 45, 75
Bsc4I CCNNNNNNNGG 1 cut(s) 66
BseBI CCWGG 1 cut(s) 51
BseLI CCNNNNNNNGG 1 cut(s) 66
BseXI GCAGC 1 cut(s) 3
BsgI GTGCAG 1 cut(s) 191
BshFI GGCC 1 cut(s) 74
BshNI GGYRCC 1 cut(s) 56
BsiHKAI GWGCWC 1 cut(s) 185
BsiHKCI CYCGRG 1 cut(s) 236
BsiSI CCGG 1 cut(s) 21
BslFI GGGAC 1 cut(s) 25
BslI CCNNNNNNNGG 1 cut(s) 66
BsmFI GGGAC 1 cut(s) 25
BsnI GGCC 1 cut(s) 74
BsoBI CYCGRG 1 cut(s) 236
Bsp1286I GDGCHC 1 cut(s) 185
BspANI GGCC 1 cut(s) 74
BspLI GGNNCC 1 cut(s) 58
BspT107I GGYRCC 1 cut(s) 56
Bst2UI CCWGG 1 cut(s) 51
Bst4CI ACNGT 1 cut(s) 180
BstC8I GCNNGC 2 cut(s) 76, 253
BstNI CCWGG 1 cut(s) 51
BstNSI RCATGY 1 cut(s) 28
BstSCI CCNGG 2 cut(s) 19, 49
BstV1I GCAGC 1 cut(s) 3
BstV2I GAAGAC 1 cut(s) 124
BsuRI GGCC 1 cut(s) 74
BtgZI GCGATG 1 cut(s) 120
Cac8I GCNNGC 2 cut(s) 76, 253
Cfr13I GGNCC 1 cut(s) 72
CseI GACGC 2 cut(s) 22, 180
CviAII CATG 2 cut(s) 25, 214
CviJI RGCY 3 cut(s) 74, 140, 251
CviKI_1 RGCY 3 cut(s) 74, 140, 251
Eco88I CYCGRG 1 cut(s) 236
EcoO109I RGGNCCY 1 cut(s) 72
EcoRII CCWGG 1 cut(s) 49
FaeI CATG 2 cut(s) 28, 217
FaiI YATR 5 cut(s) 26, 215, 226, 228, 257
FaqI GGGAC 1 cut(s) 25
FatI CATG 2 cut(s) 24, 213
Fnu4HI GCNGC 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 17
GluI GCNGC 1 cut(s) 17
GsuI CTGGAG 1 cut(s) 72
HaeIII GGCC 1 cut(s) 74
HapII CCGG 1 cut(s) 21
HgaI GACGC 2 cut(s) 22, 180
Hin1II CATG 2 cut(s) 28, 217
HpaII CCGG 1 cut(s) 21
Hpy188I TCNGA 1 cut(s) 121
Hpy188III TCNNGA 2 cut(s) 10, 238
HpyCH4III ACNGT 1 cut(s) 180
HpyCH4V TGCA 3 cut(s) 78, 208, 255
Hsp92II CATG 2 cut(s) 28, 217
LmnI GCTCC 2 cut(s) 145, 188
LpnPI CCDG 4 cut(s) 34, 36, 63, 88
Lsp1109I GCAGC 1 cut(s) 3
MboII GAAGA 3 cut(s) 124, 147, 150
MhlI GDGCHC 1 cut(s) 185
MnlI CCTC 5 cut(s) 47, 63, 108, 183, 205
MspI CCGG 1 cut(s) 21
MspR9I CCNGG 2 cut(s) 21, 51
MvaI CCWGG 1 cut(s) 51
NciI CCSGG 1 cut(s) 21
NlaIII CATG 2 cut(s) 28, 217
NlaIV GGNNCC 1 cut(s) 58
NspI RCATGY 1 cut(s) 28
PaeR7I CTCGAG 1 cut(s) 236
PkrI GCNGC 1 cut(s) 18
Psp6I CCWGG 1 cut(s) 49
PspGI CCWGG 1 cut(s) 49
PspN4I GGNNCC 1 cut(s) 58
PspPI GGNCC 1 cut(s) 72
SatI GCNGC 1 cut(s) 17
Sau96I GGNCC 1 cut(s) 72
ScrFI CCNGG 2 cut(s) 21, 51
SduI GDGCHC 1 cut(s) 185
SetI ASST 7 cut(s) 52, 58, 96, 119, 127, 142, 175
Sfr274I CTCGAG 1 cut(s) 236
SlaI CTCGAG 1 cut(s) 236
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
StyD4I CCNGG 2 cut(s) 19, 49
TaaI ACNGT 1 cut(s) 180
TaqI TCGA 1 cut(s) 237
TseI GCWGC 1 cut(s) 16
TspDTI ATGAA 1 cut(s) 202
TspGWI ACGGA 1 cut(s) 175
XceI RCATGY 1 cut(s) 28
XhoI CTCGAG 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.