RchiOBHm_Chr4g0429871

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000649
Physical Location & Seq
Reverse (-)
54580261 .. 54582377
2117 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39864

Sequence Viewer

Length: 258 bp
ATGAAAGCTTTGGGAGACGGGGCTCCAGCATGGTCATCGGGACGCTGCCCGGCATGGTCATCGGGTCGCTGCCCGGCATGGTCATCAGAGGCGTTGCTCCGGCATGGTTTCATCGGGACGTTGCCCGGCATGTTGGCTTTGACATCATTTGACACCCGAAGGTGCTGTTGTGAGGAGGGCTGCGACAGAAAAGAGAAGGTGGTGGAGAGCTGGTTTCATCGGGACGCTGCCCGGCATGTTGGCTTTGACATCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

85

Amino Acids

9.36

Weight (kDa)

7.63

Isoelectric Point (pI)

51.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000649)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33840
fragaria_vesca FvH4_2g00190 FvH4_4g18133 FvH4_4g36450 FvH4_5g02490 FvH4_5g35150 FvH4_6g35840
malus_domestica MD04G1034100.v1.1 MD06G1084100.v1.1
prunus_persica Prupe.2G139100_v2.0.a1 Prupe.5G096900_v2.0.a1 Prupe.5G096900_v2.0.a1 Prupe.5G100500_v2.0.a1 Prupe.5G100500_v2.0.a1 Prupe.5G100500_v2.0.a1
pyrus_communis pycom04g02850
rosa_chinensis RchiOBHm_Chr1g0324941 RchiOBHm_Chr1g0340751 RchiOBHm_Chr2g0133721 RchiOBHm_Chr2g0153921 RchiOBHm_Chr4g0396761 RchiOBHm_Chr4g0414291 RchiOBHm_Chr4g0429871 RchiOBHm_Chr4g0446211 RchiOBHm_Chr5g0057181 RchiOBHm_Chr5g0057391 RchiOBHm_Chr5g0077561 RchiOBHm_Chr6g0307121 RchiOBHm_Chr7g0197611
rosa_laevigata RLG00000003922 RLG00000005681 RLG00000017313 RLG00000029149 RLG00000035152
rosa_multiflora Rmu_co8043936.1_g000001 Rmu_sc0001164.1_g000009 Rmu_sc0001334.1_g000004 Rmu_sc0004952.1_g000011 Rmu_sc0013154.1_g000007 Rmu_sc0017650.1_g000006 Rmu_sc0018062.1_g000003
rosa_roxburghii Rroxscaffold_1G00023030 Rroxscaffold_2G00094650 Rroxscaffold_3G00223000 Rroxscaffold_3G00232150 Rroxscaffold_3G00248030 Rroxscaffold_3G00248040 Rroxscaffold_3G00258320
rosa_rugosa Rorug04G0184600 Rorug04G0368500 Rorug05G0306000 Rorug05G0307100 Rorug07G0041900
rosa_samantha Rh2CG164400 Rh2DG389300 Rh3AG306800 Rh4AG430600 Rh4BG440000 Rh4CG457300 Rh4DG438500 Rh5AG375500 Rh5BG386300 Rh5CG409700 Rh5DG400300 Rh6CG481100 Rh7AG166300 Rh7AG360600 Rh7BG168400 Rh7CG174700 Rh7DG168000 Rh7DG387600
rosa_wichuraiana Rw2G022790 Rw4G036780 Rw5G035320 Rw5G035460 Rw7G014480 Rw7G038030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AluBI AGCT 2 cut(s) 8, 210
AluI AGCT 2 cut(s) 8, 210
Alw26I GTCTC 1 cut(s) 9
ApeKI GCWGC 4 cut(s) 45, 69, 180, 227
AsuC2I CCSGG 4 cut(s) 50, 74, 126, 232
BanII GRGCYC 1 cut(s) 25
BbvI GCAGC 4 cut(s) 32, 56, 167, 214
BcgI CGANNNNNNTGC 4 cut(s) 18, 42, 52, 76
BcnI CCSGG 4 cut(s) 50, 74, 126, 232
BcoDI GTCTC 1 cut(s) 9
BisI GCNGC 4 cut(s) 46, 70, 181, 228
BlsI GCNGC 4 cut(s) 47, 71, 182, 229
Bme1390I CCNGG 4 cut(s) 50, 74, 126, 232
BmiI GGNNCC 1 cut(s) 24
BmrFI CCNGG 4 cut(s) 50, 74, 126, 232
BpmI CTGGAG 1 cut(s) 9
BpuMI CCSGG 4 cut(s) 50, 74, 126, 232
BsaXI ACNNNNNCTCC 2 cut(s) 197, 227
BseRI GAGGAG 1 cut(s) 188
BseXI GCAGC 4 cut(s) 32, 56, 167, 214
BsiSI CCGG 5 cut(s) 50, 74, 100, 126, 232
BslFI GGGAC 3 cut(s) 54, 130, 236
BsmAI GTCTC 1 cut(s) 9
BsmBI CGTCTC 1 cut(s) 9
BsmFI GGGAC 3 cut(s) 54, 130, 236
Bsp1286I GDGCHC 1 cut(s) 25
BspLI GGNNCC 1 cut(s) 24
BstMAI GTCTC 1 cut(s) 9
BstNSI RCATGY 2 cut(s) 133, 239
BstSCI CCNGG 4 cut(s) 48, 72, 124, 230
BstV1I GCAGC 4 cut(s) 32, 56, 167, 214
CseI GACGC 2 cut(s) 51, 233
CviAII CATG 6 cut(s) 30, 54, 78, 104, 130, 236
CviJI RGCY 6 cut(s) 8, 23, 137, 180, 210, 243
CviKI_1 RGCY 6 cut(s) 8, 23, 137, 180, 210, 243
Eco24I GRGCYC 1 cut(s) 25
EcoT38I GRGCYC 1 cut(s) 25
Esp3I CGTCTC 1 cut(s) 9
FaeI CATG 6 cut(s) 33, 57, 81, 107, 133, 239
FaiI YATR 6 cut(s) 31, 55, 79, 105, 131, 237
FaqI GGGAC 3 cut(s) 54, 130, 236
FatI CATG 6 cut(s) 29, 53, 77, 103, 129, 235
Fnu4HI GCNGC 4 cut(s) 46, 70, 181, 228
FriOI GRGCYC 1 cut(s) 25
Fsp4HI GCNGC 4 cut(s) 46, 70, 181, 228
GluI GCNGC 4 cut(s) 46, 70, 181, 228
GsuI CTGGAG 1 cut(s) 9
HapII CCGG 5 cut(s) 50, 74, 100, 126, 232
HgaI GACGC 2 cut(s) 51, 233
Hin1II CATG 6 cut(s) 33, 57, 81, 107, 133, 239
HindIII AAGCTT 1 cut(s) 6
HpaII CCGG 5 cut(s) 50, 74, 100, 126, 232
Hpy188I TCNGA 1 cut(s) 88
Hpy188III TCNNGA 3 cut(s) 39, 115, 221
HpyAV CCTTC 2 cut(s) 153, 190
HpyCH4IV ACGT 1 cut(s) 119
HpySE526I ACGT 1 cut(s) 119
Hsp92II CATG 6 cut(s) 33, 57, 81, 107, 133, 239
LmnI GCTCC 2 cut(s) 28, 102
LpnPI CCDG 7 cut(s) 39, 63, 87, 113, 139, 196, 245
Lsp1109I GCAGC 4 cut(s) 32, 56, 167, 214
MaeII ACGT 1 cut(s) 119
MhlI GDGCHC 1 cut(s) 25
MnlI CCTC 3 cut(s) 82, 166, 169
MspI CCGG 5 cut(s) 50, 74, 100, 126, 232
MspR9I CCNGG 4 cut(s) 50, 74, 126, 232
NciI CCSGG 4 cut(s) 50, 74, 126, 232
NlaIII CATG 6 cut(s) 33, 57, 81, 107, 133, 239
NlaIV GGNNCC 1 cut(s) 24
NspI RCATGY 2 cut(s) 133, 239
PkrI GCNGC 4 cut(s) 47, 71, 182, 229
PspN4I GGNNCC 1 cut(s) 24
SatI GCNGC 4 cut(s) 46, 70, 181, 228
ScrFI CCNGG 4 cut(s) 50, 74, 126, 232
SduI GDGCHC 1 cut(s) 25
SetI ASST 5 cut(s) 10, 122, 164, 201, 212
StyD4I CCNGG 4 cut(s) 48, 72, 124, 230
TaiI ACGT 1 cut(s) 122
TseI GCWGC 4 cut(s) 45, 69, 180, 227
TspDTI ATGAA 3 cut(s) 17, 100, 206
XceI RCATGY 2 cut(s) 133, 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.