Rh2DG389300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000649
Physical Location & Seq
Reverse (-)
56390886 .. 56391365
480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG389300.1

Sequence Viewer

Length: 480 bp
ATGGTTTTGTTGTTGTTTGACAGCAGATTCGGTGAAGCCTGTAGCATTGATTTTCTCTATGAGTTACAAACTGCTACAGAGACACTGCTGTCAGGATTTGAGAAAGCAAAATTGTCGCTGCTACAGTATGGGAAGGCCTGCTGCTGGGATTTGAGAGCGAAAGGCCTACACCGGAGACGCTGCTCTAATATGTTCATCGGGACGCTGCCCGGCATGGTCATCGGGACCTTGCCCGGAATGGTTCATCGAGATGTTGCCCGACATGTTCATTGGAGACGTTGCTCTGGCATGTTGTCTTTGACATCATTGACACCCGAAGGTGCCGTTGTGAGGAGGGCCTGCAATAGAAAAGAAAAGGTGGTGGAAAGCGATGGAATGAGGTCTGAACCTTTTGTCTTCCAACCTGCTTTGCTGCCTTCTCCTTCTTGTTTTTCCACGCTGCTGTGCCTTGTTGTCCTCCTCTTTTTTCTTTTCATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

17.89

Weight (kDa)

9.04

Isoelectric Point (pI)

61.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000649)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33840
fragaria_vesca FvH4_2g00190 FvH4_4g18133 FvH4_4g36450 FvH4_5g02490 FvH4_5g35150 FvH4_6g35840
malus_domestica MD04G1034100.v1.1 MD06G1084100.v1.1
prunus_persica Prupe.2G139100_v2.0.a1 Prupe.5G096900_v2.0.a1 Prupe.5G096900_v2.0.a1 Prupe.5G100500_v2.0.a1 Prupe.5G100500_v2.0.a1 Prupe.5G100500_v2.0.a1
pyrus_communis pycom04g02850
rosa_chinensis RchiOBHm_Chr1g0324941 RchiOBHm_Chr1g0340751 RchiOBHm_Chr2g0133721 RchiOBHm_Chr2g0153921 RchiOBHm_Chr4g0396761 RchiOBHm_Chr4g0414291 RchiOBHm_Chr4g0429871 RchiOBHm_Chr4g0446211 RchiOBHm_Chr5g0057181 RchiOBHm_Chr5g0057391 RchiOBHm_Chr5g0077561 RchiOBHm_Chr6g0307121 RchiOBHm_Chr7g0197611
rosa_laevigata RLG00000003922 RLG00000005681 RLG00000017313 RLG00000029149 RLG00000035152
rosa_multiflora Rmu_co8043936.1_g000001 Rmu_sc0001164.1_g000009 Rmu_sc0001334.1_g000004 Rmu_sc0004952.1_g000011 Rmu_sc0013154.1_g000007 Rmu_sc0017650.1_g000006 Rmu_sc0018062.1_g000003
rosa_roxburghii Rroxscaffold_1G00023030 Rroxscaffold_2G00094650 Rroxscaffold_3G00223000 Rroxscaffold_3G00232150 Rroxscaffold_3G00248030 Rroxscaffold_3G00248040 Rroxscaffold_3G00258320
rosa_rugosa Rorug04G0184600 Rorug04G0368500 Rorug05G0306000 Rorug05G0307100 Rorug07G0041900
rosa_samantha Rh2CG164400 Rh2DG389300 Rh3AG306800 Rh4AG430600 Rh4BG440000 Rh4CG457300 Rh4DG438500 Rh5AG375500 Rh5BG386300 Rh5CG409700 Rh5DG400300 Rh6CG481100 Rh7AG166300 Rh7AG360600 Rh7BG168400 Rh7CG174700 Rh7DG168000 Rh7DG387600
rosa_wichuraiana Rw2G022790 Rw4G036780 Rw5G035320 Rw5G035460 Rw7G014480 Rw7G038030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 88
Acc36I ACCTGC 1 cut(s) 412
AccB1I GGYRCC 1 cut(s) 320
AfiI CCNNNNNNNGG 2 cut(s) 144, 330
AflIII ACRYGT 1 cut(s) 262
Alw26I GTCTC 3 cut(s) 74, 169, 268
AoxI GGCC 3 cut(s) 135, 163, 336
ApeKI GCWGC 6 cut(s) 118, 141, 180, 205, 412, 439
ArsI GACNNNNNNTTYG 2 cut(s) 11, 43
AspS9I GGNCC 2 cut(s) 225, 336
AsuC2I CCSGG 2 cut(s) 210, 234
AsuHPI GGTGA 1 cut(s) 44
AvaII GGWCC 1 cut(s) 225
BanI GGYRCC 1 cut(s) 320
BbsI GAAGAC 1 cut(s) 388
BbvI GCAGC 6 cut(s) 105, 128, 167, 192, 399, 426
BccI CCATC 1 cut(s) 365
BceAI ACGGC 1 cut(s) 308
BcgI CGANNNNNNTGC 4 cut(s) 96, 130, 202, 236
BcnI CCSGG 2 cut(s) 210, 234
BcoDI GTCTC 3 cut(s) 74, 169, 268
BfmI CTRYAG 3 cut(s) 40, 75, 122
BfuAI ACCTGC 1 cut(s) 412
BisI GCNGC 6 cut(s) 119, 142, 181, 206, 413, 440
BlsI GCNGC 6 cut(s) 120, 143, 182, 207, 414, 441
Bme1390I CCNGG 2 cut(s) 210, 234
Bme18I GGWCC 1 cut(s) 225
BmgT120I GGNCC 2 cut(s) 225, 336
BmiI GGNNCC 2 cut(s) 226, 322
BmrFI CCNGG 2 cut(s) 210, 234
BpiI GAAGAC 1 cut(s) 388
BpuMI CCSGG 2 cut(s) 210, 234
BsaWI WCCGGW 1 cut(s) 171
Bsc4I CCNNNNNNNGG 2 cut(s) 144, 330
BseLI CCNNNNNNNGG 2 cut(s) 144, 330
BseRI GAGGAG 2 cut(s) 346, 449
BseXI GCAGC 6 cut(s) 105, 128, 167, 192, 399, 426
BseYI CCCAGC 1 cut(s) 144
BshFI GGCC 3 cut(s) 137, 165, 338
BshNI GGYRCC 1 cut(s) 320
BsiSI CCGG 3 cut(s) 172, 210, 234
BslFI GGGAC 2 cut(s) 214, 238
BslI CCNNNNNNNGG 2 cut(s) 144, 330
BsmAI GTCTC 3 cut(s) 74, 169, 268
BsmBI CGTCTC 2 cut(s) 169, 268
BsmFI GGGAC 2 cut(s) 214, 238
BsnI GGCC 3 cut(s) 137, 165, 338
BspANI GGCC 3 cut(s) 137, 165, 338
BspLI GGNNCC 2 cut(s) 226, 322
BspMI ACCTGC 1 cut(s) 412
BspT107I GGYRCC 1 cut(s) 320
Bst4CI ACNGT 1 cut(s) 126
BstC8I GCNNGC 2 cut(s) 139, 340
BstMAI GTCTC 3 cut(s) 74, 169, 268
BstNSI RCATGY 2 cut(s) 266, 292
BstSCI CCNGG 2 cut(s) 208, 232
BstSFI CTRYAG 3 cut(s) 40, 75, 122
BstV1I GCAGC 6 cut(s) 105, 128, 167, 192, 399, 426
BstV2I GAAGAC 1 cut(s) 388
BsuRI GGCC 3 cut(s) 137, 165, 338
BtgZI GCGATG 1 cut(s) 384
BtsI GCAGTG 1 cut(s) 83
BtsIMutI CAGTG 1 cut(s) 83
BveI ACCTGC 1 cut(s) 412
Cac8I GCNNGC 2 cut(s) 139, 340
Cfr13I GGNCC 2 cut(s) 225, 336
CseI GACGC 2 cut(s) 186, 211
CviAII CATG 4 cut(s) 214, 263, 289, 475
CviJI RGCY 4 cut(s) 38, 137, 165, 338
CviKI_1 RGCY 4 cut(s) 38, 137, 165, 338
DrdI GACNNNNNNGTC 1 cut(s) 88
DseDI GACNNNNNNGTC 1 cut(s) 88
Eco147I AGGCCT 2 cut(s) 137, 165
Eco47I GGWCC 1 cut(s) 225
EcoO109I RGGNCCY 2 cut(s) 225, 336
Esp3I CGTCTC 2 cut(s) 169, 268
FaeI CATG 4 cut(s) 217, 266, 292, 478
FaiI YATR 7 cut(s) 60, 129, 191, 215, 264, 290, 476
FaqI GGGAC 2 cut(s) 214, 238
FatI CATG 4 cut(s) 213, 262, 288, 474
Fnu4HI GCNGC 6 cut(s) 119, 142, 181, 206, 413, 440
Fsp4HI GCNGC 6 cut(s) 119, 142, 181, 206, 413, 440
GluI GCNGC 6 cut(s) 119, 142, 181, 206, 413, 440
GsaI CCCAGC 1 cut(s) 148
HaeIII GGCC 3 cut(s) 137, 165, 338
HapII CCGG 3 cut(s) 172, 210, 234
HgaI GACGC 2 cut(s) 186, 211
Hin1II CATG 4 cut(s) 217, 266, 292, 478
HinfI GANTC 1 cut(s) 27
HpaII CCGG 3 cut(s) 172, 210, 234
HphI GGTGA 1 cut(s) 44
Hpy188I TCNGA 1 cut(s) 385
Hpy188III TCNNGA 4 cut(s) 93, 199, 223, 248
HpyAV CCTTC 4 cut(s) 127, 311, 426, 432
HpyCH4III ACNGT 1 cut(s) 126
HpyCH4IV ACGT 1 cut(s) 277
HpyCH4V TGCA 1 cut(s) 342
HpySE526I ACGT 1 cut(s) 277
Hsp92II CATG 4 cut(s) 217, 266, 292, 478
Lsp1109I GCAGC 6 cut(s) 105, 128, 167, 192, 399, 426
MaeII ACGT 1 cut(s) 277
MaeIII GTNAC 1 cut(s) 63
MboII GAAGA 1 cut(s) 388
MluCI AATT 1 cut(s) 110
MmeI TCCRAC 1 cut(s) 424
MnlI CCTC 5 cut(s) 324, 327, 372, 467, 470
MslI CAYNNNNRTG 1 cut(s) 249
MspI CCGG 3 cut(s) 172, 210, 234
MspR9I CCNGG 2 cut(s) 210, 234
NciI CCSGG 2 cut(s) 210, 234
NlaIII CATG 4 cut(s) 217, 266, 292, 478
NlaIV GGNNCC 2 cut(s) 226, 322
NspI RCATGY 2 cut(s) 266, 292
PceI AGGCCT 2 cut(s) 137, 165
PciI ACATGT 1 cut(s) 262
PfeI GAWTC 1 cut(s) 27
PkrI GCNGC 6 cut(s) 120, 143, 182, 207, 414, 441
PpuMI RGGWCCY 1 cut(s) 225
PscI ACATGT 1 cut(s) 262
Psp5II RGGWCCY 1 cut(s) 225
PspFI CCCAGC 1 cut(s) 144
PspN4I GGNNCC 2 cut(s) 226, 322
PspPI GGNCC 2 cut(s) 225, 336
PspPPI RGGWCCY 1 cut(s) 225
RseI CAYNNNNRTG 1 cut(s) 249
SatI GCNGC 6 cut(s) 119, 142, 181, 206, 413, 440
Sau96I GGNCC 2 cut(s) 225, 336
ScrFI CCNGG 2 cut(s) 210, 234
SetI ASST 7 cut(s) 230, 280, 322, 360, 383, 391, 406
SfcI CTRYAG 3 cut(s) 40, 75, 122
SinI GGWCC 1 cut(s) 225
SmiMI CAYNNNNRTG 1 cut(s) 249
Sse9I AATT 1 cut(s) 110
SseBI AGGCCT 2 cut(s) 137, 165
StuI AGGCCT 2 cut(s) 137, 165
StyD4I CCNGG 2 cut(s) 208, 232
TaaI ACNGT 1 cut(s) 126
TaiI ACGT 1 cut(s) 280
TaqI TCGA 1 cut(s) 247
TasI AATT 1 cut(s) 110
TfiI GAWTC 1 cut(s) 27
TscAI CASTG 1 cut(s) 90
TseI GCWGC 6 cut(s) 118, 141, 180, 205, 412, 439
TspDTI ATGAA 4 cut(s) 184, 233, 257, 463
TspRI CASTG 1 cut(s) 90
VpaK11BI GGWCC 1 cut(s) 225
XceI RCATGY 2 cut(s) 266, 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.