Rroxscaffold_3G00223000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000649
Physical Location & Seq
Forward (+)
6117210 .. 6119644
2435 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00223000.1

Sequence Viewer

Length: 159 bp
ATGGTTTTGTTGTTGTTTGACAGAAGATTCAGTGAAGCCTGTAGCTCCCGTAGCTTTGATTTCCTTTATGAGTTTGAAACTGCTACAGAGACTCTGCTGCGAGGATTTGAGAGAGCAAAACTTGTCACTGTTACAATATGGGAAGGCCAGCTGCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

52

Amino Acids

6.14

Weight (kDa)

4.86

Isoelectric Point (pI)

50.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000649)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33840
fragaria_vesca FvH4_2g00190 FvH4_4g18133 FvH4_4g36450 FvH4_5g02490 FvH4_5g35150 FvH4_6g35840
malus_domestica MD04G1034100.v1.1 MD06G1084100.v1.1
prunus_persica Prupe.2G139100_v2.0.a1 Prupe.5G096900_v2.0.a1 Prupe.5G096900_v2.0.a1 Prupe.5G100500_v2.0.a1 Prupe.5G100500_v2.0.a1 Prupe.5G100500_v2.0.a1
pyrus_communis pycom04g02850
rosa_chinensis RchiOBHm_Chr1g0324941 RchiOBHm_Chr1g0340751 RchiOBHm_Chr2g0133721 RchiOBHm_Chr2g0153921 RchiOBHm_Chr4g0396761 RchiOBHm_Chr4g0414291 RchiOBHm_Chr4g0429871 RchiOBHm_Chr4g0446211 RchiOBHm_Chr5g0057181 RchiOBHm_Chr5g0057391 RchiOBHm_Chr5g0077561 RchiOBHm_Chr6g0307121 RchiOBHm_Chr7g0197611
rosa_laevigata RLG00000003922 RLG00000005681 RLG00000017313 RLG00000029149 RLG00000035152
rosa_multiflora Rmu_co8043936.1_g000001 Rmu_sc0001164.1_g000009 Rmu_sc0001334.1_g000004 Rmu_sc0004952.1_g000011 Rmu_sc0013154.1_g000007 Rmu_sc0017650.1_g000006 Rmu_sc0018062.1_g000003
rosa_roxburghii Rroxscaffold_1G00023030 Rroxscaffold_2G00094650 Rroxscaffold_3G00223000 Rroxscaffold_3G00232150 Rroxscaffold_3G00248030 Rroxscaffold_3G00248040 Rroxscaffold_3G00258320
rosa_rugosa Rorug04G0184600 Rorug04G0368500 Rorug05G0306000 Rorug05G0307100 Rorug07G0041900
rosa_samantha Rh2CG164400 Rh2DG389300 Rh3AG306800 Rh4AG430600 Rh4BG440000 Rh4CG457300 Rh4DG438500 Rh5AG375500 Rh5BG386300 Rh5CG409700 Rh5DG400300 Rh6CG481100 Rh7AG166300 Rh7AG360600 Rh7BG168400 Rh7CG174700 Rh7DG168000 Rh7DG387600
rosa_wichuraiana Rw2G022790 Rw4G036780 Rw5G035320 Rw5G035460 Rw7G014480 Rw7G038030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 77
AluBI AGCT 3 cut(s) 45, 54, 151
AluI AGCT 3 cut(s) 45, 54, 151
Alw26I GTCTC 1 cut(s) 83
AlwNI CAGNNNCTG 1 cut(s) 154
AoxI GGCC 1 cut(s) 145
ApeKI GCWGC 2 cut(s) 97, 151
BbvI GCAGC 2 cut(s) 84, 138
BcoDI GTCTC 1 cut(s) 83
BfmI CTRYAG 2 cut(s) 40, 84
BisI GCNGC 2 cut(s) 98, 152
BlsI GCNGC 2 cut(s) 99, 153
BseXI GCAGC 2 cut(s) 84, 138
BshFI GGCC 1 cut(s) 147
BsmAI GTCTC 1 cut(s) 83
BsnI GGCC 1 cut(s) 147
BspANI GGCC 1 cut(s) 147
Bst4CI ACNGT 1 cut(s) 130
BstC8I GCNNGC 1 cut(s) 149
BstMAI GTCTC 1 cut(s) 83
BstMWI GCNNNNNNNGC 1 cut(s) 51
BstSFI CTRYAG 2 cut(s) 40, 84
BstV1I GCAGC 2 cut(s) 84, 138
BsuRI GGCC 1 cut(s) 147
BtsIMutI CAGTG 2 cut(s) 37, 126
Cac8I GCNNGC 1 cut(s) 149
CaiI CAGNNNCTG 1 cut(s) 154
CviJI RGCY 5 cut(s) 38, 45, 54, 147, 151
CviKI_1 RGCY 5 cut(s) 38, 45, 54, 147, 151
FaiI YATR 2 cut(s) 69, 139
Fnu4HI GCNGC 2 cut(s) 98, 152
Fsp4HI GCNGC 2 cut(s) 98, 152
FspEI CC 8 cut(s) 52, 61, 62, 77, 87, 124, 125, 129
GluI GCNGC 2 cut(s) 98, 152
HaeIII GGCC 1 cut(s) 147
HinfI GANTC 2 cut(s) 27, 91
HpyAV CCTTC 1 cut(s) 137
HpyCH4III ACNGT 1 cut(s) 130
HpyF10VI GCNNNNNNNGC 1 cut(s) 51
LmnI GCTCC 1 cut(s) 50
LpnPI CCDG 1 cut(s) 52
Lsp1109I GCAGC 2 cut(s) 84, 138
MaeIII GTNAC 2 cut(s) 124, 130
MboII GAAGA 1 cut(s) 36
MlyI GAGTC 1 cut(s) 85
MnlI CCTC 1 cut(s) 95
MspA1I CMGCKG 1 cut(s) 151
MwoI GCNNNNNNNGC 1 cut(s) 51
NmuCI GTSAC 1 cut(s) 124
PfeI GAWTC 1 cut(s) 27
PkrI GCNGC 2 cut(s) 99, 153
PleI GAGTC 1 cut(s) 85
PpsI GAGTC 1 cut(s) 85
PstNI CAGNNNCTG 1 cut(s) 154
PvuII CAGCTG 1 cut(s) 151
SatI GCNGC 2 cut(s) 98, 152
SchI GAGTC 1 cut(s) 85
SetI ASST 3 cut(s) 47, 56, 153
SfcI CTRYAG 2 cut(s) 40, 84
SgeI CNNG 4 cut(s) 51, 60, 113, 134
TaaI ACNGT 1 cut(s) 130
TfiI GAWTC 1 cut(s) 27
TscAI CASTG 2 cut(s) 37, 133
TseFI GTSAC 1 cut(s) 124
TseI GCWGC 2 cut(s) 97, 151
Tsp45I GTSAC 1 cut(s) 124
TspRI CASTG 2 cut(s) 37, 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.