Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0000649

Physical Location & Seq

Genomic Coordinates Forward (+)

57719761 .. 57721087

Gene Structure 1327 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G038030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGAATCTGGACAGTGGCAAAGTTGAGTTTATGTGGTCTTCTAAGGAGATCAATGCCAGGTCTCATGAGTACTGGCCGTGTGTAATGGATATTGCCAGGAAAAACAAGCTTCCGAGGATCATTAGGTGTAGTCAAATTATGGATCGAATGGATCAAGAAGAGTTAACAGCTGCCCAAATCCTCTACCCGTGTATGCAATGTGCAGATATTTTCTTCCTGCAGGCTGACATTTGTCAACTCAGTATGGATCAACGTAAAGTGAATGTGCTTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004812 GO:0004831 GO:0005488 GO:0005515 GO:0005524 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006437 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016597 GO:0016874 GO:0016875 GO:0017076 GO:0019538 GO:0019752 GO:0030554 GO:0031406 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034645 GO:0034660 GO:0035639 GO:0036094 GO:0042802 GO:0042803 GO:0043038 GO:0043039 GO:0043043 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043177 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0046483 GO:0046983 GO:0071704 GO:0072545 GO:0090304 GO:0097159 GO:0097367 GO:0140098 GO:0140101 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_1b

Protein Analysis

91

Amino Acids

10.68

Weight (kDa)

5.72

Isoelectric Point (pI)

30.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1b	PF00579	3 - 91	1.2e-15	tRNA synthetases class I (W and Y)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33840
fragaria_vesca	FvH4_2g00190 FvH4_4g18133 FvH4_4g36450 FvH4_5g02490 FvH4_5g35150 FvH4_6g35840
malus_domestica	MD04G1034100.v1.1 MD06G1084100.v1.1
prunus_persica	Prupe.2G139100_v2.0.a1 Prupe.5G096900_v2.0.a1 Prupe.5G096900_v2.0.a1 Prupe.5G100500_v2.0.a1 Prupe.5G100500_v2.0.a1 Prupe.5G100500_v2.0.a1
pyrus_communis	pycom04g02850
rosa_chinensis	RchiOBHm_Chr1g0324941 RchiOBHm_Chr1g0340751 RchiOBHm_Chr2g0133721 RchiOBHm_Chr2g0153921 RchiOBHm_Chr4g0396761 RchiOBHm_Chr4g0414291 RchiOBHm_Chr4g0429871 RchiOBHm_Chr4g0446211 RchiOBHm_Chr5g0057181 RchiOBHm_Chr5g0057391 RchiOBHm_Chr5g0077561 RchiOBHm_Chr6g0307121 RchiOBHm_Chr7g0197611
rosa_laevigata	RLG00000003922 RLG00000005681 RLG00000017313 RLG00000029149 RLG00000035152
rosa_multiflora	Rmu_co8043936.1_g000001 Rmu_sc0001164.1_g000009 Rmu_sc0001334.1_g000004 Rmu_sc0004952.1_g000011 Rmu_sc0013154.1_g000007 Rmu_sc0017650.1_g000006 Rmu_sc0018062.1_g000003
rosa_roxburghii	Rroxscaffold_1G00023030 Rroxscaffold_2G00094650 Rroxscaffold_3G00223000 Rroxscaffold_3G00232150 Rroxscaffold_3G00248030 Rroxscaffold_3G00248040 Rroxscaffold_3G00258320
rosa_rugosa	Rorug04G0184600 Rorug04G0368500 Rorug05G0306000 Rorug05G0307100 Rorug07G0041900
rosa_samantha	Rh2CG164400 Rh2DG389300 Rh3AG306800 Rh4AG430600 Rh4BG440000 Rh4CG457300 Rh4DG438500 Rh5AG375500 Rh5BG386300 Rh5CG409700 Rh5DG400300 Rh6CG481100 Rh7AG166300 Rh7AG360600 Rh7BG168400 Rh7CG174700 Rh7DG168000 Rh7DG387600
rosa_wichuraiana	Rw2G022790 Rw4G036780 Rw5G035320 Rw5G035460 Rw7G014480 Rw7G038030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	125, 150, 159, 255
AcoI	YGGCCR	1 cut(s)	74
AfaI	GTAC	1 cut(s)	71
AjnI	CCWGG	2 cut(s)	56, 95
AluBI	AGCT	2 cut(s)	109, 170
AluI	AGCT	2 cut(s)	109, 170
Alw26I	GTCTC	1 cut(s)	66
AlwI	GGATC	4 cut(s)	125, 150, 159, 255
AoxI	GGCC	1 cut(s)	74
ApeKI	GCWGC	1 cut(s)	170
BbsI	GAAGAC	1 cut(s)	30
BbvI	GCAGC	1 cut(s)	157
BceAI	ACGGC	1 cut(s)	61
BciT130I	CCWGG	2 cut(s)	58, 97
BcoDI	GTCTC	1 cut(s)	66
BfmI	CTRYAG	1 cut(s)	218
BisI	GCNGC	1 cut(s)	171
BlsI	GCNGC	1 cut(s)	172
BmcAI	AGTACT	1 cut(s)	71
Bme1390I	CCNGG	2 cut(s)	58, 97
BmrFI	CCNGG	2 cut(s)	58, 97
BoxI	GACNNNNGTC	1 cut(s)	231
BpiI	GAAGAC	1 cut(s)	30
BsaI	GGTCTC	1 cut(s)	66
BsaJI	CCNNGG	1 cut(s)	113
Bse1I	ACTGG	1 cut(s)	77
Bse3DI	GCAATG	1 cut(s)	203
BseBI	CCWGG	2 cut(s)	58, 97
BseDI	CCNNGG	1 cut(s)	113
BseMI	GCAATG	1 cut(s)	203
BseMII	CTCAG	1 cut(s)	253
BseNI	ACTGG	1 cut(s)	77
BseXI	GCAGC	1 cut(s)	157
BsgI	GTGCAG	1 cut(s)	222
BshFI	GGCC	1 cut(s)	76
BsmAI	GTCTC	1 cut(s)	66
BsnI	GGCC	1 cut(s)	76
Bso31I	GGTCTC	1 cut(s)	66
Bsp143I	GATC	5 cut(s)	48, 117, 142, 151, 247
BspANI	GGCC	1 cut(s)	76
BspCNI	CTCAG	1 cut(s)	252
BspHI	TCATGA	1 cut(s)	64
BspMAI	CTGCAG	1 cut(s)	222
BspPI	GGATC	4 cut(s)	125, 150, 159, 255
BspTNI	GGTCTC	1 cut(s)	66
BsrDI	GCAATG	1 cut(s)	203
BsrI	ACTGG	1 cut(s)	77
BssECI	CCNNGG	1 cut(s)	113
BssMI	GATC	5 cut(s)	48, 117, 142, 151, 247
Bst2UI	CCWGG	2 cut(s)	58, 97
Bst4CI	ACNGT	1 cut(s)	14
Bst6I	CTCTTC	1 cut(s)	153
BstC8I	GCNNGC	2 cut(s)	222, 270
BstDEI	CTNAG	2 cut(s)	42, 239
BstKTI	GATC	5 cut(s)	51, 120, 145, 154, 250
BstMAI	GTCTC	1 cut(s)	66
BstMBI	GATC	5 cut(s)	48, 117, 142, 151, 247
BstNI	CCWGG	2 cut(s)	58, 97
BstPAI	GACNNNNGTC	1 cut(s)	231
BstSCI	CCNGG	2 cut(s)	56, 95
BstSFI	CTRYAG	1 cut(s)	218
BstV1I	GCAGC	1 cut(s)	157
BstV2I	GAAGAC	1 cut(s)	30
BsuRI	GGCC	1 cut(s)	76
BtsIMutI	CAGTG	1 cut(s)	19
Cac8I	GCNNGC	2 cut(s)	222, 270
CciI	TCATGA	1 cut(s)	64
Csp6I	GTAC	1 cut(s)	70
CviAII	CATG	2 cut(s)	65, 273
CviJI	RGCY	4 cut(s)	76, 109, 170, 224
CviKI_1	RGCY	4 cut(s)	76, 109, 170, 224
CviQI	GTAC	1 cut(s)	70
DdeI	CTNAG	2 cut(s)	42, 239
DpnI	GATC	5 cut(s)	50, 119, 144, 153, 249
DpnII	GATC	5 cut(s)	48, 117, 142, 151, 247
EaeI	YGGCCR	1 cut(s)	74
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
Eco31I	GGTCTC	1 cut(s)	66
EcoRII	CCWGG	2 cut(s)	56, 95
FaeI	CATG	2 cut(s)	68, 276
FaiI	YATR	6 cut(s)	32, 66, 140, 194, 245, 274
FatI	CATG	2 cut(s)	64, 272
Fnu4HI	GCNGC	1 cut(s)	171
Fsp4HI	GCNGC	1 cut(s)	171
GluI	GCNGC	1 cut(s)	171
HaeIII	GGCC	1 cut(s)	76
Hin1II	CATG	2 cut(s)	68, 276
HincII	GTYRAC	2 cut(s)	165, 236
HindII	GTYRAC	2 cut(s)	165, 236
HindIII	AAGCTT	1 cut(s)	107
HinfI	GANTC	1 cut(s)	4
HpaI	GTTAAC	1 cut(s)	165
Hpy166II	GTNNAC	2 cut(s)	165, 236
Hpy188I	TCNGA	1 cut(s)	114
Hpy188III	TCNNGA	3 cut(s)	8, 65, 155
Hpy8I	GTNNAC	2 cut(s)	165, 236
HpyCH4III	ACNGT	1 cut(s)	14
HpyCH4IV	ACGT	1 cut(s)	253
HpyCH4V	TGCA	4 cut(s)	196, 203, 220, 272
HpyF3I	CTNAG	2 cut(s)	42, 239
HpySE526I	ACGT	1 cut(s)	253
Hsp92II	CATG	2 cut(s)	68, 276
KspAI	GTTAAC	1 cut(s)	165
Kzo9I	GATC	5 cut(s)	48, 117, 142, 151, 247
LpnPI	CCDG	7 cut(s)	43, 58, 70, 82, 109, 206, 230
Lsp1109I	GCAGC	1 cut(s)	157
MaeII	ACGT	1 cut(s)	253
MalI	GATC	5 cut(s)	50, 119, 144, 153, 249
MboI	GATC	5 cut(s)	48, 117, 142, 151, 247
MboII	GAAGA	3 cut(s)	30, 170, 205
MluCI	AATT	1 cut(s)	135
MnlI	CCTC	2 cut(s)	108, 191
MseI	TTAA	1 cut(s)	164
MspA1I	CMGCKG	1 cut(s)	170
MspR9I	CCNGG	2 cut(s)	58, 97
MvaI	CCWGG	2 cut(s)	58, 97
NdeII	GATC	5 cut(s)	48, 117, 142, 151, 247
NlaIII	CATG	2 cut(s)	68, 276
PagI	TCATGA	1 cut(s)	64
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	1 cut(s)	172
PshAI	GACNNNNGTC	1 cut(s)	231
Psp6I	CCWGG	2 cut(s)	56, 95
PspGI	CCWGG	2 cut(s)	56, 95
PstI	CTGCAG	1 cut(s)	222
PvuII	CAGCTG	1 cut(s)	170
RsaI	GTAC	1 cut(s)	71
RsaNI	GTAC	1 cut(s)	70
SaqAI	TTAA	1 cut(s)	164
SatI	GCNGC	1 cut(s)	171
Sau3AI	GATC	5 cut(s)	48, 117, 142, 151, 247
SbfI	CCTGCAGG	1 cut(s)	222
ScaI	AGTACT	1 cut(s)	71
ScrFI	CCNGG	2 cut(s)	58, 97
SdaI	CCTGCAGG	1 cut(s)	222
SetI	ASST	5 cut(s)	62, 111, 128, 172, 256
SfcI	CTRYAG	1 cut(s)	218
Sse8387I	CCTGCAGG	1 cut(s)	222
Sse9I	AATT	1 cut(s)	135
StyD4I	CCNGG	2 cut(s)	56, 95
TaaI	ACNGT	1 cut(s)	14
TaiI	ACGT	1 cut(s)	256
TaqI	TCGA	1 cut(s)	145
TasI	AATT	1 cut(s)	135
TatI	WGTACW	1 cut(s)	69
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	1 cut(s)	164
Tru9I	TTAA	1 cut(s)	164
TscAI	CASTG	1 cut(s)	19
TseI	GCWGC	1 cut(s)	170
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	19
ZrmI	AGTACT	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.