Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000649

Physical Location & Seq

Genomic Coordinates Forward (+)

12844925 .. 12845157

Gene Structure 233 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36913

Sequence Viewer

CDS Protein Promoter (2k)

Length: 156 bp

ATGGATATTGCAAGGAAAAACAAGCTTCTGAGGATCATTAGGTGTAGTCAAATTATGGGTCGAACGGGTCAAGAAGAGTTAGCTGTAGTCCAAATCCTCTACCCGTGTATGCAATGCGGATGTTATTGGTTTTGGGTGAGAAGAAGAAGAAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004812 GO:0004831 GO:0005488 GO:0005515 GO:0005524 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006437 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016597 GO:0016874 GO:0016875 GO:0017076 GO:0019538 GO:0019752 GO:0030554 GO:0031406 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034645 GO:0034660 GO:0035639 GO:0036094 GO:0042802 GO:0042803 GO:0043038 GO:0043039 GO:0043043 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043177 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0046483 GO:0046983 GO:0071704 GO:0072545 GO:0090304 GO:0097159 GO:0097367 GO:0140098 GO:0140101 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_1b

Protein Analysis

51

Amino Acids

6.25

Weight (kDa)

10.43

Isoelectric Point (pI)

78.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33840
fragaria_vesca	FvH4_2g00190 FvH4_4g18133 FvH4_4g36450 FvH4_5g02490 FvH4_5g35150 FvH4_6g35840
malus_domestica	MD04G1034100.v1.1 MD06G1084100.v1.1
prunus_persica	Prupe.2G139100_v2.0.a1 Prupe.5G096900_v2.0.a1 Prupe.5G096900_v2.0.a1 Prupe.5G100500_v2.0.a1 Prupe.5G100500_v2.0.a1 Prupe.5G100500_v2.0.a1
pyrus_communis	pycom04g02850
rosa_chinensis	RchiOBHm_Chr1g0324941 RchiOBHm_Chr1g0340751 RchiOBHm_Chr2g0133721 RchiOBHm_Chr2g0153921 RchiOBHm_Chr4g0396761 RchiOBHm_Chr4g0414291 RchiOBHm_Chr4g0429871 RchiOBHm_Chr4g0446211 RchiOBHm_Chr5g0057181 RchiOBHm_Chr5g0057391 RchiOBHm_Chr5g0077561 RchiOBHm_Chr6g0307121 RchiOBHm_Chr7g0197611
rosa_laevigata	RLG00000003922 RLG00000005681 RLG00000017313 RLG00000029149 RLG00000035152
rosa_multiflora	Rmu_co8043936.1_g000001 Rmu_sc0001164.1_g000009 Rmu_sc0001334.1_g000004 Rmu_sc0004952.1_g000011 Rmu_sc0013154.1_g000007 Rmu_sc0017650.1_g000006 Rmu_sc0018062.1_g000003
rosa_roxburghii	Rroxscaffold_1G00023030 Rroxscaffold_2G00094650 Rroxscaffold_3G00223000 Rroxscaffold_3G00232150 Rroxscaffold_3G00248030 Rroxscaffold_3G00248040 Rroxscaffold_3G00258320
rosa_rugosa	Rorug04G0184600 Rorug04G0368500 Rorug05G0306000 Rorug05G0307100 Rorug07G0041900
rosa_samantha	Rh2CG164400 Rh2DG389300 Rh3AG306800 Rh4AG430600 Rh4BG440000 Rh4CG457300 Rh4DG438500 Rh5AG375500 Rh5BG386300 Rh5CG409700 Rh5DG400300 Rh6CG481100 Rh7AG166300 Rh7AG360600 Rh7BG168400 Rh7CG174700 Rh7DG168000 Rh7DG387600
rosa_wichuraiana	Rw2G022790 Rw4G036780 Rw5G035320 Rw5G035460 Rw7G014480 Rw7G038030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	117
AclWI	GGATC	1 cut(s)	41
AluBI	AGCT	2 cut(s)	25, 83
AluI	AGCT	2 cut(s)	25, 83
AlwI	GGATC	1 cut(s)	41
ArsI	GACNNNNNNTTYG	2 cut(s)	43, 75
AsuHPI	GGTGA	1 cut(s)	148
BfmI	CTRYAG	1 cut(s)	84
Bse3DI	GCAATG	1 cut(s)	119
BseGI	GGATG	1 cut(s)	125
BseMI	GCAATG	1 cut(s)	119
BseMII	CTCAG	1 cut(s)	20
Bsp143I	GATC	1 cut(s)	33
BspACI	CCGC	1 cut(s)	117
BspCNI	CTCAG	1 cut(s)	21
BspPI	GGATC	1 cut(s)	41
BsrDI	GCAATG	1 cut(s)	119
BssMI	GATC	1 cut(s)	33
Bst6I	CTCTTC	1 cut(s)	69
BstDEI	CTNAG	1 cut(s)	29
BstF5I	GGATG	1 cut(s)	125
BstKTI	GATC	1 cut(s)	36
BstMBI	GATC	1 cut(s)	33
BstSFI	CTRYAG	1 cut(s)	84
BtsCI	GGATG	1 cut(s)	125
CviJI	RGCY	2 cut(s)	25, 83
CviKI_1	RGCY	2 cut(s)	25, 83
DdeI	CTNAG	1 cut(s)	29
DpnI	GATC	1 cut(s)	35
DpnII	GATC	1 cut(s)	33
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
FaiI	YATR	2 cut(s)	56, 110
FokI	GGATG	1 cut(s)	132
HindIII	AAGCTT	1 cut(s)	23
HphI	GGTGA	1 cut(s)	148
Hpy188I	TCNGA	1 cut(s)	30
Hpy188III	TCNNGA	1 cut(s)	71
HpyAV	CCTTC	1 cut(s)	144
HpyCH4V	TGCA	2 cut(s)	11, 112
HpyF3I	CTNAG	1 cut(s)	29
Kzo9I	GATC	1 cut(s)	33
MalI	GATC	1 cut(s)	35
MboI	GATC	1 cut(s)	33
MboII	GAAGA	3 cut(s)	86, 153, 156
MluCI	AATT	1 cut(s)	51
MnlI	CCTC	2 cut(s)	24, 107
NdeII	GATC	1 cut(s)	33
Sau3AI	GATC	1 cut(s)	33
SetI	ASST	4 cut(s)	27, 44, 85, 155
SfcI	CTRYAG	1 cut(s)	84
SgeI	CNNG	6 cut(s)	24, 34, 78, 83, 115, 117
Sse9I	AATT	1 cut(s)	51
SsiI	CCGC	1 cut(s)	117
TaqI	TCGA	1 cut(s)	61
TasI	AATT	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.