RchiOBHm_Chr5g0057391

Belongs to the class-I aminoacyl-tRNA synthetase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
61319560 .. 61322777
3218 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33417

Sequence Viewer

Length: 1029 bp
ATGTCGATCGCCGACTCTGAGTCTCAAGACCAGCCCGCAAGCTCGTCCAGTCCATCTGTCCAATTGAGTCTGGATGAGAGGTACAACCTACTTAGGAGCATCGCGGAGGAGTGTATCCTAGAAGAAGAGCTCAAGAATTTGCTGGATAAGAAGGCCGAGCCGATCTGCTACGACGGCTTTGAGCCCTCCGGTAGAATGCATATTGCTCAGGGAGTTTTGAAGGCAATTAATGTGAACAAGATGATTGCCGCAGGCTGCAGAGTGAAGATATGGATTGCCGATTGGTTTGCGCAGCTAAACAATAAGATGGGGGGTGATTTGGACAAGATTGAGACTGTGGGGAAGTATTTTATTGAGATATGGAGGTCTGTAGGGATGAATCTGGACAGTGGGAAAGTTGAGTTTTTGTGGTCTTCTAAGGAGATCAATGCCAGGTCACATGAGTACTGGCCGCGTGTAATGGATATTGCCAGGAAAACAAGCTTTCGAGGATCATTAGATCAAGAAGAGTTAACTGCTGCCCAGATCCTCTACCCGTGTATGCAATGTGCAGATATTTTTTTCCTGCAGGCTGACATCTGTCAACTCGGTATGGATCAACGTAAAGTGAATGTGCTCGCACGAGAGTACTGTGATGACATCAAGAAGAAAAACAATCCTATTATCTTGTCACACCATATGCTACCTGGTTTACAGCAAGGCCAGGAGAAAATGTCAAAAAGTGATCTATCCTCCTCCATATTTATGGAAGATGAAGAGGCGGAAGTGAATACAAAGATTAAGAAGGCTTACTGCCCTCCAGAAAAGGTCGAAGGCAATCCTTGTTTGGAATACGTACAGTACCTCATTTTCCCTTGGTTTCATGAGTTCACTGTAGAGTGCAGTGAAAAGAACGGTGGAGATATGTTCCGATGGCAATTATTGTTGCCCGTACGATCCCATTTCAAGAATGACAAAGCTGCCAAACAGCTATTACAAAGTGTAAAGGTACATTTGGTTTTACCTTTGGATAAAATATTATGTGCTTAG

Protein Analysis

342

Amino Acids

39.08

Weight (kDa)

5.53

Isoelectric Point (pI)

58.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_1b PF00579 51 - 298 6e-49 tRNA synthetases class I (W and Y)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000649)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33840
fragaria_vesca FvH4_2g00190 FvH4_4g18133 FvH4_4g36450 FvH4_5g02490 FvH4_5g35150 FvH4_6g35840
malus_domestica MD04G1034100.v1.1 MD06G1084100.v1.1
prunus_persica Prupe.2G139100_v2.0.a1 Prupe.5G096900_v2.0.a1 Prupe.5G096900_v2.0.a1 Prupe.5G100500_v2.0.a1 Prupe.5G100500_v2.0.a1 Prupe.5G100500_v2.0.a1
pyrus_communis pycom04g02850
rosa_chinensis RchiOBHm_Chr1g0324941 RchiOBHm_Chr1g0340751 RchiOBHm_Chr2g0133721 RchiOBHm_Chr2g0153921 RchiOBHm_Chr4g0396761 RchiOBHm_Chr4g0414291 RchiOBHm_Chr4g0429871 RchiOBHm_Chr4g0446211 RchiOBHm_Chr5g0057181 RchiOBHm_Chr5g0057391 RchiOBHm_Chr5g0077561 RchiOBHm_Chr6g0307121 RchiOBHm_Chr7g0197611
rosa_laevigata RLG00000003922 RLG00000005681 RLG00000017313 RLG00000029149 RLG00000035152
rosa_multiflora Rmu_co8043936.1_g000001 Rmu_sc0001164.1_g000009 Rmu_sc0001334.1_g000004 Rmu_sc0004952.1_g000011 Rmu_sc0013154.1_g000007 Rmu_sc0017650.1_g000006 Rmu_sc0018062.1_g000003
rosa_roxburghii Rroxscaffold_1G00023030 Rroxscaffold_2G00094650 Rroxscaffold_3G00223000 Rroxscaffold_3G00232150 Rroxscaffold_3G00248030 Rroxscaffold_3G00248040 Rroxscaffold_3G00258320
rosa_rugosa Rorug04G0184600 Rorug04G0368500 Rorug05G0306000 Rorug05G0307100 Rorug07G0041900
rosa_samantha Rh2CG164400 Rh2DG389300 Rh3AG306800 Rh4AG430600 Rh4BG440000 Rh4CG457300 Rh4DG438500 Rh5AG375500 Rh5BG386300 Rh5CG409700 Rh5DG400300 Rh6CG481100 Rh7AG166300 Rh7AG360600 Rh7BG168400 Rh7CG174700 Rh7DG168000 Rh7DG387600
rosa_wichuraiana Rw2G022790 Rw4G036780 Rw5G035320 Rw5G035460 Rw7G014480 Rw7G038030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 291
AccII CGCG 2 cut(s) 104, 454
AciI CCGC 5 cut(s) 36, 104, 249, 452, 761
AclWI GGATC 4 cut(s) 499, 520, 603, 930
AcoI YGGCCR 1 cut(s) 449
AcsI RAATTY 1 cut(s) 136
AfaI GTAC 7 cut(s) 83, 446, 629, 837, 842, 933, 990
AgsI TTSAA 2 cut(s) 220, 946
AhdI GACNNNNNGTC 1 cut(s) 19
AjnI CCWGG 4 cut(s) 431, 470, 685, 702
AluBI AGCT 6 cut(s) 42, 130, 295, 483, 959, 970
AluI AGCT 6 cut(s) 42, 130, 295, 483, 959, 970
Alw21I GWGCWC 2 cut(s) 132, 618
Alw26I GTCTC 2 cut(s) 27, 326
AlwI GGATC 4 cut(s) 499, 520, 603, 930
AoxI GGCC 3 cut(s) 153, 449, 700
ApeKI GCWGC 4 cut(s) 255, 292, 518, 959
ApoI RAATTY 1 cut(s) 136
AseI ATTAAT 1 cut(s) 228
AspLEI GCGC 1 cut(s) 292
AsuHPI GGTGA 1 cut(s) 326
BanII GRGCYC 2 cut(s) 132, 186
BauI CACGAG 1 cut(s) 621
BbsI GAAGAC 1 cut(s) 405
Bbv12I GWGCWC 2 cut(s) 132, 618
BbvI GCAGC 4 cut(s) 242, 304, 505, 946
BccI CCATC 3 cut(s) 61, 301, 906
BceAI ACGGC 1 cut(s) 190
BcgI CGANNNNNNTGC 2 cut(s) 269, 303
BciT130I CCWGG 4 cut(s) 433, 472, 687, 704
BciVI GTATCC 1 cut(s) 125
BcoDI GTCTC 2 cut(s) 27, 326
BfaI CTAG 1 cut(s) 119
BfmI CTRYAG 4 cut(s) 256, 369, 566, 873
BfuI GTATCC 1 cut(s) 125
BisI GCNGC 6 cut(s) 249, 256, 293, 452, 519, 960
BlsI GCNGC 6 cut(s) 250, 257, 294, 453, 520, 961
BmcAI AGTACT 2 cut(s) 446, 629
Bme1390I CCNGG 4 cut(s) 433, 472, 687, 704
BmeRI GACNNNNNGTC 1 cut(s) 19
BmrFI CCNGG 4 cut(s) 433, 472, 687, 704
BmsI GCATC 1 cut(s) 108
BoxI GACNNNNGTC 1 cut(s) 579
BpiI GAAGAC 1 cut(s) 405
BpmI CTGGAG 1 cut(s) 783
Bpu10I CCTNAGC 1 cut(s) 207
BpuEI CTTGAG 2 cut(s) 9, 116
BsaAI YACGTR 1 cut(s) 835
BsaJI CCNNGG 1 cut(s) 854
BsaWI WCCGGW 1 cut(s) 188
BsaXI ACNNNNNCTCC 2 cut(s) 698, 728
Bse1I ACTGG 2 cut(s) 48, 452
Bse3DI GCAATG 1 cut(s) 551
BseBI CCWGG 4 cut(s) 433, 472, 687, 704
BseDI CCNNGG 1 cut(s) 854
BseGI GGATG 2 cut(s) 79, 381
BseMI GCAATG 1 cut(s) 551
BseMII CTCAG 2 cut(s) 9, 221
BseNI ACTGG 2 cut(s) 48, 452
BseRI GAGGAG 2 cut(s) 122, 724
BseXI GCAGC 4 cut(s) 242, 304, 505, 946
BsgI GTGCAG 2 cut(s) 570, 901
Bsh1236I CGCG 2 cut(s) 104, 454
Bsh1285I CGRYCG 1 cut(s) 9
BshFI GGCC 3 cut(s) 155, 451, 702
BsiEI CGRYCG 1 cut(s) 9
BsiHKAI GWGCWC 2 cut(s) 132, 618
BsiSI CCGG 1 cut(s) 189
BsiWI CGTACG 1 cut(s) 931
BsmAI GTCTC 2 cut(s) 27, 326
BsmI GAATGC 1 cut(s) 201
BsnI GGCC 3 cut(s) 155, 451, 702
Bsp1286I GDGCHC 3 cut(s) 132, 186, 618
Bsp143I GATC 9 cut(s) 6, 162, 423, 491, 499, 525, 595, 724, 935
BspACI CCGC 5 cut(s) 36, 104, 249, 452, 761
BspANI GGCC 3 cut(s) 155, 451, 702
BspCNI CTCAG 2 cut(s) 10, 220
BspFNI CGCG 2 cut(s) 104, 454
BspHI TCATGA 1 cut(s) 862
BspMAI CTGCAG 2 cut(s) 260, 570
BspPI GGATC 4 cut(s) 499, 520, 603, 930
BspQI GCTCTTC 1 cut(s) 120
BsrDI GCAATG 1 cut(s) 551
BsrI ACTGG 2 cut(s) 48, 452
BssECI CCNNGG 1 cut(s) 854
BssMI GATC 9 cut(s) 6, 162, 423, 491, 499, 525, 595, 724, 935
BssSI CACGAG 1 cut(s) 621
BssT1I CCWWGG 1 cut(s) 854
Bst2BI CACGAG 1 cut(s) 621
Bst2UI CCWGG 4 cut(s) 433, 472, 687, 704
Bst4CI ACNGT 6 cut(s) 337, 389, 632, 840, 874, 896
Bst6I CTCTTC 3 cut(s) 120, 501, 750
BstBAI YACGTR 1 cut(s) 835
BstC8I GCNNGC 5 cut(s) 36, 40, 253, 570, 618
BstDEI CTNAG 5 cut(s) 18, 92, 207, 417, 1026
BstF5I GGATG 2 cut(s) 79, 381
BstFNI CGCG 2 cut(s) 104, 454
BstHHI GCGC 1 cut(s) 292
BstKTI GATC 9 cut(s) 9, 165, 426, 494, 502, 528, 598, 727, 938
BstMAI GTCTC 2 cut(s) 27, 326
BstMBI GATC 9 cut(s) 6, 162, 423, 491, 499, 525, 595, 724, 935
BstMCI CGRYCG 1 cut(s) 9
BstMWI GCNNNNNNNGC 1 cut(s) 174
BstNI CCWGG 4 cut(s) 433, 472, 687, 704
BstPAI GACNNNNGTC 1 cut(s) 579
BstSCI CCNGG 4 cut(s) 431, 470, 685, 702
BstSFI CTRYAG 4 cut(s) 256, 369, 566, 873
BstSNI TACGTA 1 cut(s) 835
BstUI CGCG 2 cut(s) 104, 454
BstV1I GCAGC 4 cut(s) 242, 304, 505, 946
BstV2I GAAGAC 1 cut(s) 405
BstX2I RGATCY 1 cut(s) 525
BstXI CCANNNNNNTGG 1 cut(s) 745
BstYI RGATCY 1 cut(s) 525
BsuI GTATCC 1 cut(s) 125
BsuRI GGCC 3 cut(s) 155, 451, 702
BtgZI GCGATG 1 cut(s) 85
BtsCI GGATG 2 cut(s) 79, 381
BtsI GCAGTG 1 cut(s) 889
BtsIMutI CAGTG 3 cut(s) 394, 870, 889
Cac8I GCNNGC 5 cut(s) 36, 40, 253, 570, 618
CciI TCATGA 1 cut(s) 862
CfoI GCGC 1 cut(s) 292
CsiI ACCWGGT 1 cut(s) 685
Csp6I GTAC 7 cut(s) 82, 445, 628, 836, 841, 932, 989
CviAII CATG 2 cut(s) 440, 863
CviQI GTAC 7 cut(s) 82, 445, 628, 836, 841, 932, 989
DdeI CTNAG 5 cut(s) 18, 92, 207, 417, 1026
DpnI GATC 9 cut(s) 8, 164, 425, 493, 501, 527, 597, 726, 937
DpnII GATC 9 cut(s) 6, 162, 423, 491, 499, 525, 595, 724, 935
DriI GACNNNNNGTC 1 cut(s) 19
EaeI YGGCCR 1 cut(s) 449
Eam1104I CTCTTC 3 cut(s) 120, 501, 750
Eam1105I GACNNNNNGTC 1 cut(s) 19
EarI CTCTTC 3 cut(s) 120, 501, 750
EciI GGCGGA 1 cut(s) 776
Ecl136II GAGCTC 1 cut(s) 130
Eco105I TACGTA 1 cut(s) 835
Eco130I CCWWGG 1 cut(s) 854
Eco24I GRGCYC 2 cut(s) 132, 186
Eco53kI GAGCTC 1 cut(s) 130
EcoICRI GAGCTC 1 cut(s) 130
EcoRII CCWGG 4 cut(s) 431, 470, 685, 702
EcoT14I CCWWGG 1 cut(s) 854
EcoT22I ATGCAT 1 cut(s) 201
EcoT38I GRGCYC 2 cut(s) 132, 186
ErhI CCWWGG 1 cut(s) 854
FaeI CATG 2 cut(s) 443, 866
FatI CATG 2 cut(s) 439, 862
FauI CCCGC 1 cut(s) 43
FauNDI CATATG 1 cut(s) 678
Fnu4HI GCNGC 6 cut(s) 249, 256, 293, 452, 519, 960
FokI GGATG 2 cut(s) 86, 388
FriOI GRGCYC 2 cut(s) 132, 186
Fsp4HI GCNGC 6 cut(s) 249, 256, 293, 452, 519, 960
FspBI CTAG 1 cut(s) 119
FspI TGCGCA 1 cut(s) 291
GlaI GCGC 1 cut(s) 291
GluI GCNGC 6 cut(s) 249, 256, 293, 452, 519, 960
GsuI CTGGAG 1 cut(s) 783
HaeIII GGCC 3 cut(s) 155, 451, 702
HapII CCGG 1 cut(s) 189
HhaI GCGC 1 cut(s) 292
Hin1II CATG 2 cut(s) 443, 866
Hin6I GCGC 1 cut(s) 290
HinP1I GCGC 1 cut(s) 290
HincII GTYRAC 2 cut(s) 513, 584
HindII GTYRAC 2 cut(s) 513, 584
HindIII AAGCTT 1 cut(s) 481
HinfI GANTC 4 cut(s) 14, 20, 67, 379
HpaI GTTAAC 1 cut(s) 513
HpaII CCGG 1 cut(s) 189
HphI GGTGA 1 cut(s) 326
Hpy166II GTNNAC 5 cut(s) 235, 513, 584, 692, 870
Hpy188I TCNGA 2 cut(s) 19, 911
Hpy188III TCNNGA 9 cut(s) 26, 71, 133, 383, 503, 643, 800, 863, 946
Hpy8I GTNNAC 5 cut(s) 235, 513, 584, 692, 870
Hpy99I CGWCG 1 cut(s) 176
HpyAV CCTTC 4 cut(s) 145, 214, 778, 806
HpyCH4III ACNGT 6 cut(s) 337, 389, 632, 840, 874, 896
HpyCH4IV ACGT 2 cut(s) 601, 834
HpyCH4V TGCA 6 cut(s) 199, 258, 544, 551, 568, 882
HpyF10VI GCNNNNNNNGC 1 cut(s) 174
HpyF3I CTNAG 5 cut(s) 18, 92, 207, 417, 1026
HpySE526I ACGT 2 cut(s) 601, 834
Hsp92II CATG 2 cut(s) 443, 866
HspAI GCGC 1 cut(s) 290
KspAI GTTAAC 1 cut(s) 513
Kzo9I GATC 9 cut(s) 6, 162, 423, 491, 499, 525, 595, 724, 935
LguI GCTCTTC 1 cut(s) 120
LmnI GCTCC 1 cut(s) 96
Lsp1109I GCAGC 4 cut(s) 242, 304, 505, 946
LweI GCATC 1 cut(s) 108
MabI ACCWGGT 1 cut(s) 685
MaeI CTAG 1 cut(s) 119
MaeII ACGT 2 cut(s) 601, 834
MaeIII GTNAC 2 cut(s) 435, 669
MalI GATC 9 cut(s) 8, 164, 425, 493, 501, 527, 597, 726, 937
MboI GATC 9 cut(s) 6, 162, 423, 491, 499, 525, 595, 724, 935
MboII GAAGA 8 cut(s) 134, 137, 277, 405, 518, 658, 761, 767
MfeI CAATTG 1 cut(s) 62
MflI RGATCY 1 cut(s) 525
MhlI GDGCHC 3 cut(s) 132, 186, 618
MluCI AATT 4 cut(s) 62, 136, 225, 917
MlyI GAGTC 3 cut(s) 8, 29, 76
Mph1103I ATGCAT 1 cut(s) 201
MseI TTAA 3 cut(s) 228, 512, 780
MslI CAYNNNNRTG 1 cut(s) 743
MspI CCGG 1 cut(s) 189
MspR9I CCNGG 4 cut(s) 433, 472, 687, 704
MunI CAATTG 1 cut(s) 62
Mva1269I GAATGC 1 cut(s) 201
MvaI CCWGG 4 cut(s) 433, 472, 687, 704
MvnI CGCG 2 cut(s) 104, 454
MwoI GCNNNNNNNGC 1 cut(s) 174
NdeI CATATG 1 cut(s) 678
NdeII GATC 9 cut(s) 6, 162, 423, 491, 499, 525, 595, 724, 935
NlaIII CATG 2 cut(s) 443, 866
NmeAIII GCCGAG 1 cut(s) 181
NmuCI GTSAC 2 cut(s) 435, 669
NsbI TGCGCA 1 cut(s) 291
NsiI ATGCAT 1 cut(s) 201
PagI TCATGA 1 cut(s) 862
PciSI GCTCTTC 1 cut(s) 120
PctI GAATGC 1 cut(s) 201
PfeI GAWTC 1 cut(s) 379
Pfl23II CGTACG 1 cut(s) 931
PkrI GCNGC 6 cut(s) 250, 257, 294, 453, 520, 961
Ple19I CGATCG 1 cut(s) 9
PleI GAGTC 3 cut(s) 8, 28, 75
PpsI GAGTC 3 cut(s) 8, 28, 75
Ppu21I YACGTR 1 cut(s) 835
PshAI GACNNNNGTC 1 cut(s) 579
PshBI ATTAAT 1 cut(s) 228
Psp124BI GAGCTC 1 cut(s) 132
Psp6I CCWGG 4 cut(s) 431, 470, 685, 702
PspGI CCWGG 4 cut(s) 431, 470, 685, 702
PspLI CGTACG 1 cut(s) 931
PstI CTGCAG 2 cut(s) 260, 570
PsuI RGATCY 1 cut(s) 525
PvuI CGATCG 1 cut(s) 9
RsaI GTAC 7 cut(s) 83, 446, 629, 837, 842, 933, 990
RsaNI GTAC 7 cut(s) 82, 445, 628, 836, 841, 932, 989
RseI CAYNNNNRTG 1 cut(s) 743
SacI GAGCTC 1 cut(s) 132
SapI GCTCTTC 1 cut(s) 120
SaqAI TTAA 3 cut(s) 228, 512, 780
SatI GCNGC 6 cut(s) 249, 256, 293, 452, 519, 960
Sau3AI GATC 9 cut(s) 6, 162, 423, 491, 499, 525, 595, 724, 935
SbfI CCTGCAGG 1 cut(s) 570
ScaI AGTACT 2 cut(s) 446, 629
SchI GAGTC 3 cut(s) 8, 29, 76
ScrFI CCNGG 4 cut(s) 433, 472, 687, 704
SdaI CCTGCAGG 1 cut(s) 570
SduI GDGCHC 3 cut(s) 132, 186, 618
SexAI ACCWGGT 1 cut(s) 685
SfaNI GCATC 1 cut(s) 108
SfcI CTRYAG 4 cut(s) 256, 369, 566, 873
SmiMI CAYNNNNRTG 1 cut(s) 743
SmlI CTYRAG 2 cut(s) 24, 131
SmoI CTYRAG 2 cut(s) 24, 131
SnaBI TACGTA 1 cut(s) 835
Sse8387I CCTGCAGG 1 cut(s) 570
Sse9I AATT 4 cut(s) 62, 136, 225, 917
SsiI CCGC 5 cut(s) 36, 104, 249, 452, 761
SspI AATATT 1 cut(s) 1017
SspMI CTAG 1 cut(s) 119
SstI GAGCTC 1 cut(s) 132
StyD4I CCNGG 4 cut(s) 431, 470, 685, 702
StyI CCWWGG 1 cut(s) 854
TaaI ACNGT 6 cut(s) 337, 389, 632, 840, 874, 896
TaiI ACGT 2 cut(s) 604, 837
TaqI TCGA 3 cut(s) 5, 487, 810
TasI AATT 4 cut(s) 62, 136, 225, 917
TatI WGTACW 2 cut(s) 444, 627
TauI GCSGC 2 cut(s) 251, 454
TfiI GAWTC 1 cut(s) 379
Tru1I TTAA 3 cut(s) 228, 512, 780
Tru9I TTAA 3 cut(s) 228, 512, 780
TscAI CASTG 3 cut(s) 394, 877, 889
TseFI GTSAC 2 cut(s) 435, 669
TseI GCWGC 4 cut(s) 255, 292, 518, 959
Tsp45I GTSAC 2 cut(s) 435, 669
TspDTI ATGAA 3 cut(s) 392, 768, 851
TspRI CASTG 3 cut(s) 394, 877, 889
VspI ATTAAT 1 cut(s) 228
XapI RAATTY 1 cut(s) 136
XcmI CCANNNNNNNNNTGG 1 cut(s) 683
XspI CTAG 1 cut(s) 119
ZrmI AGTACT 2 cut(s) 446, 629
Zsp2I ATGCAT 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.