Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000649

Physical Location & Seq

Genomic Coordinates Reverse (-)

35976272 .. 35977104

Gene Structure 833 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0307100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGAACCACGAACTCTGCAACTAATGGAGCTACAAACCCAGCAACAAATCGAGGATGGAGGAAACAACCAAGCAGCCGGGAGTAGTGCCAACACGGATTTCTGGCGAAGCCGTACCAGGTGGATTCCTACTCCAGATCAAATAAGAATCCTCAAGGATCTTTACTACGACAAGGGAGTTAAGTGCCCAACTACAGAGCACATTCACGAGATCTGTCTCCAGCTGAACCAGTATGGACAGGTTGAGGGCAAGAACATTTACTTTTGGTTCCAGAACGTCAGGGCTCGAGAGAAGCAGATGAAGAGGTACAATCAGGCTGCTCAAGTGCCCATGGGAACTAGTTCTCCTGGTACTGGTGGATCCATTGATCTCAATTTTGGGTCCACTGGTTCTACTGGTGCTGGTGGATCCATCGACATCAATTTTGGGCCAGCTGGTGGATCCATTGACATCAATTTTGGGTCCACTAGTTCTACTGGTGCTGGTGGATCCATTGATCTCAATTTTGGTTCCACTGCTTCTACTGGAGGACAATCTTCCATGGAACAACGAGTAGGAGTTCGCCAGGAGTTTGAAACTCTTCCTCTGTTCCCCGTGCACGGCGAGGACGTCTATGGTAACCCGAAGACTACTTCCGAGGAAGGTAGCGCATATGATTACTATTTCGGTGGCTCAGGCGGTTACAACCGTGGATCTCCAGTTTCTCTTGAGCTCAGCCTCAACCCATCCGGAGCTACTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004812 GO:0004831 GO:0005488 GO:0005515 GO:0005524 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006437 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016597 GO:0016874 GO:0016875 GO:0017076 GO:0019538 GO:0019752 GO:0030554 GO:0031406 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034645 GO:0034660 GO:0035639 GO:0036094 GO:0042802 GO:0042803 GO:0043038 GO:0043039 GO:0043043 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043177 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0046483 GO:0046983 GO:0071704 GO:0072545 GO:0090304 GO:0097159 GO:0097367 GO:0140098 GO:0140101 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_1b

Protein Analysis

247

Amino Acids

26.59

Weight (kDa)

4.92

Isoelectric Point (pI)

44.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	38 - 99	2.3e-09	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33840
fragaria_vesca	FvH4_2g00190 FvH4_4g18133 FvH4_4g36450 FvH4_5g02490 FvH4_5g35150 FvH4_6g35840
malus_domestica	MD04G1034100.v1.1 MD06G1084100.v1.1
prunus_persica	Prupe.2G139100_v2.0.a1 Prupe.5G096900_v2.0.a1 Prupe.5G096900_v2.0.a1 Prupe.5G100500_v2.0.a1 Prupe.5G100500_v2.0.a1 Prupe.5G100500_v2.0.a1
pyrus_communis	pycom04g02850
rosa_chinensis	RchiOBHm_Chr1g0324941 RchiOBHm_Chr1g0340751 RchiOBHm_Chr2g0133721 RchiOBHm_Chr2g0153921 RchiOBHm_Chr4g0396761 RchiOBHm_Chr4g0414291 RchiOBHm_Chr4g0429871 RchiOBHm_Chr4g0446211 RchiOBHm_Chr5g0057181 RchiOBHm_Chr5g0057391 RchiOBHm_Chr5g0077561 RchiOBHm_Chr6g0307121 RchiOBHm_Chr7g0197611
rosa_laevigata	RLG00000003922 RLG00000005681 RLG00000017313 RLG00000029149 RLG00000035152
rosa_multiflora	Rmu_co8043936.1_g000001 Rmu_sc0001164.1_g000009 Rmu_sc0001334.1_g000004 Rmu_sc0004952.1_g000011 Rmu_sc0013154.1_g000007 Rmu_sc0017650.1_g000006 Rmu_sc0018062.1_g000003
rosa_roxburghii	Rroxscaffold_1G00023030 Rroxscaffold_2G00094650 Rroxscaffold_3G00223000 Rroxscaffold_3G00232150 Rroxscaffold_3G00248030 Rroxscaffold_3G00248040 Rroxscaffold_3G00258320
rosa_rugosa	Rorug04G0184600 Rorug04G0368500 Rorug05G0306000 Rorug05G0307100 Rorug07G0041900
rosa_samantha	Rh2CG164400 Rh2DG389300 Rh3AG306800 Rh4AG430600 Rh4BG440000 Rh4CG457300 Rh4DG438500 Rh5AG375500 Rh5BG386300 Rh5CG409700 Rh5DG400300 Rh6CG481100 Rh7AG166300 Rh7AG360600 Rh7BG168400 Rh7CG174700 Rh7DG168000 Rh7DG387600
rosa_wichuraiana	Rw2G022790 Rw4G036780 Rw5G035320 Rw5G035460 Rw7G014480 Rw7G038030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	612
AccB7I	CCANNNNNTGG	1 cut(s)	437
AccIII	TCCGGA	1 cut(s)	728
AciI	CCGC	1 cut(s)	678
AcyI	GRCGYC	1 cut(s)	609
AfaI	GTAC	3 cut(s)	115, 308, 352
AfiI	CCNNNNNNNGG	3 cut(s)	353, 437, 599
AgsI	TTSAA	1 cut(s)	575
AhlI	ACTAGT	2 cut(s)	338, 467
AjnI	CCWGG	3 cut(s)	116, 346, 564
AjuI	GAANNNNNNNTTGG	2 cut(s)	83, 115
AloI	GAACNNNNNNTCC	2 cut(s)	328, 360
AluBI	AGCT	5 cut(s)	31, 223, 434, 712, 734
AluI	AGCT	5 cut(s)	31, 223, 434, 712, 734
Alw21I	GWGCWC	3 cut(s)	201, 600, 714
Alw26I	GTCTC	1 cut(s)	221
Alw44I	GTGCAC	1 cut(s)	596
Ama87I	CYCGRG	1 cut(s)	285
Aor13HI	TCCGGA	1 cut(s)	728
AoxI	GGCC	1 cut(s)	428
ApaLI	GTGCAC	1 cut(s)	596
ApeKI	GCWGC	2 cut(s)	74, 317
ArsI	GACNNNNNNTTYG	4 cut(s)	407, 439, 440, 472
Asp700I	GAANNNNTTC	2 cut(s)	340, 579
AspLEI	GCGC	1 cut(s)	650
AspS9I	GGNCC	3 cut(s)	381, 428, 462
AsuC2I	CCSGG	1 cut(s)	79
AvaI	CYCGRG	1 cut(s)	285
AvaII	GGWCC	2 cut(s)	381, 462
BaeGI	GKGCMC	3 cut(s)	188, 330, 600
BamHI	GGATCC	4 cut(s)	359, 407, 440, 488
BanII	GRGCYC	2 cut(s)	286, 714
BauI	CACGAG	1 cut(s)	206
BbsI	GAAGAC	1 cut(s)	632
Bbv12I	GWGCWC	3 cut(s)	201, 600, 714
BbvI	GCAGC	2 cut(s)	86, 304
BccI	CCATC	3 cut(s)	50, 419, 733
BceAI	ACGGC	2 cut(s)	96, 616
BciT130I	CCWGG	3 cut(s)	118, 348, 566
BcnI	CCSGG	1 cut(s)	79
BcoDI	GTCTC	1 cut(s)	221
BcuI	ACTAGT	2 cut(s)	338, 467
BfaI	CTAG	2 cut(s)	339, 468
BfmI	CTRYAG	1 cut(s)	192
BglII	AGATCT	1 cut(s)	210
BisI	GCNGC	2 cut(s)	75, 318
BlpI	GCTNAGC	1 cut(s)	713
BlsI	GCNGC	2 cut(s)	76, 319
Bme1390I	CCNGG	4 cut(s)	79, 118, 348, 566
Bme18I	GGWCC	2 cut(s)	381, 462
BmeT110I	CYCGRG	1 cut(s)	285
BmgT120I	GGNCC	3 cut(s)	381, 428, 462
BmiI	GGNNCC	9 cut(s)	6, 269, 361, 382, 409, 442, 463, 490, 511
BmrFI	CCNGG	4 cut(s)	79, 118, 348, 566
BpiI	GAAGAC	1 cut(s)	632
BpmI	CTGGAG	4 cut(s)	117, 203, 546, 681
Bpu10I	CCTNAGC	1 cut(s)	673
Bpu1102I	GCTNAGC	1 cut(s)	713
BpuEI	CTTGAG	3 cut(s)	137, 306, 728
BpuMI	CCSGG	1 cut(s)	79
BsaHI	GRCGYC	1 cut(s)	609
BsaJI	CCNNGG	4 cut(s)	330, 540, 636, 688
BsaWI	WCCGGW	1 cut(s)	728
BsaXI	ACNNNNNCTCC	2 cut(s)	328, 358
Bsc4I	CCNNNNNNNGG	3 cut(s)	353, 437, 599
Bse1I	ACTGG	7 cut(s)	229, 358, 391, 400, 481, 529, 698
BseAI	TCCGGA	1 cut(s)	728
BseBI	CCWGG	3 cut(s)	118, 348, 566
BseDI	CCNNGG	4 cut(s)	330, 540, 636, 688
BseGI	GGATG	2 cut(s)	61, 725
BseLI	CCNNNNNNNGG	3 cut(s)	353, 437, 599
BseMII	CTCAG	2 cut(s)	687, 727
BseNI	ACTGG	7 cut(s)	229, 358, 391, 400, 481, 529, 698
BseSI	GKGCMC	3 cut(s)	188, 330, 600
BseXI	GCAGC	2 cut(s)	86, 304
BseYI	CCCAGC	1 cut(s)	39
BshFI	GGCC	1 cut(s)	430
BsiHKAI	GWGCWC	3 cut(s)	201, 600, 714
BsiHKCI	CYCGRG	1 cut(s)	285
BsiSI	CCGG	2 cut(s)	78, 729
BslI	CCNNNNNNNGG	3 cut(s)	353, 437, 599
BsmAI	GTCTC	1 cut(s)	221
BsnI	GGCC	1 cut(s)	430
BsoBI	CYCGRG	1 cut(s)	285
Bsp1286I	GDGCHC	6 cut(s)	188, 201, 286, 330, 600, 714
Bsp13I	TCCGGA	1 cut(s)	728
Bsp1720I	GCTNAGC	1 cut(s)	713
Bsp19I	CCATGG	2 cut(s)	330, 540
BspACI	CCGC	1 cut(s)	678
BspANI	GGCC	1 cut(s)	430
BspCNI	CTCAG	2 cut(s)	686, 726
BspEI	TCCGGA	1 cut(s)	728
BspLI	GGNNCC	9 cut(s)	6, 269, 361, 382, 409, 442, 463, 490, 511
BsrI	ACTGG	7 cut(s)	229, 358, 391, 400, 481, 529, 698
BssECI	CCNNGG	4 cut(s)	330, 540, 636, 688
BssNI	GRCGYC	1 cut(s)	609
BssSI	CACGAG	1 cut(s)	206
BssT1I	CCWWGG	2 cut(s)	330, 540
Bst2BI	CACGAG	1 cut(s)	206
Bst2UI	CCWGG	3 cut(s)	118, 348, 566
Bst4CI	ACNGT	1 cut(s)	689
Bst6I	CTCTTC	2 cut(s)	296, 585
BstACI	GRCGYC	1 cut(s)	609
BstC8I	GCNNGC	1 cut(s)	432
BstDEI	CTNAG	2 cut(s)	673, 713
BstDSI	CCRYGG	3 cut(s)	330, 540, 688
BstEII	GGTNACC	1 cut(s)	617
BstF5I	GGATG	2 cut(s)	61, 725
BstHHI	GCGC	1 cut(s)	650
BstMAI	GTCTC	1 cut(s)	221
BstNI	CCWGG	3 cut(s)	118, 348, 566
BstPI	GGTNACC	1 cut(s)	617
BstSCI	CCNGG	4 cut(s)	77, 116, 346, 564
BstSFI	CTRYAG	1 cut(s)	192
BstSLI	GKGCMC	3 cut(s)	188, 330, 600
BstV1I	GCAGC	2 cut(s)	86, 304
BstV2I	GAAGAC	1 cut(s)	632
BstX2I	RGATCY	7 cut(s)	157, 210, 359, 407, 440, 488, 692
BstYI	RGATCY	7 cut(s)	157, 210, 359, 407, 440, 488, 692
BsuRI	GGCC	1 cut(s)	430
BtgI	CCRYGG	3 cut(s)	330, 540, 688
BtsCI	GGATG	2 cut(s)	61, 725
BtsI	GCAGTG	1 cut(s)	513
BtsIMutI	CAGTG	2 cut(s)	384, 513
Cac8I	GCNNGC	1 cut(s)	432
CfoI	GCGC	1 cut(s)	650
Cfr13I	GGNCC	3 cut(s)	381, 428, 462
CsiI	ACCWGGT	1 cut(s)	116
Csp6I	GTAC	3 cut(s)	114, 307, 351
CviAII	CATG	2 cut(s)	331, 541
CviQI	GTAC	3 cut(s)	114, 307, 351
DdeI	CTNAG	2 cut(s)	673, 713
Eam1104I	CTCTTC	2 cut(s)	296, 585
EarI	CTCTTC	2 cut(s)	296, 585
Ecl136II	GAGCTC	1 cut(s)	712
Eco130I	CCWWGG	2 cut(s)	330, 540
Eco24I	GRGCYC	2 cut(s)	286, 714
Eco47I	GGWCC	2 cut(s)	381, 462
Eco53kI	GAGCTC	1 cut(s)	712
Eco88I	CYCGRG	1 cut(s)	285
Eco91I	GGTNACC	1 cut(s)	617
EcoICRI	GAGCTC	1 cut(s)	712
EcoO65I	GGTNACC	1 cut(s)	617
EcoRII	CCWGG	3 cut(s)	116, 346, 564
EcoT14I	CCWWGG	2 cut(s)	330, 540
EcoT38I	GRGCYC	2 cut(s)	286, 714
ErhI	CCWWGG	2 cut(s)	330, 540
FaeI	CATG	2 cut(s)	334, 544
FaiI	YATR	6 cut(s)	234, 332, 542, 615, 652, 654
FatI	CATG	2 cut(s)	330, 540
FauNDI	CATATG	1 cut(s)	652
Fnu4HI	GCNGC	2 cut(s)	75, 318
FokI	GGATG	2 cut(s)	68, 712
FriOI	GRGCYC	2 cut(s)	286, 714
Fsp4HI	GCNGC	2 cut(s)	75, 318
FspBI	CTAG	2 cut(s)	339, 468
GlaI	GCGC	1 cut(s)	649
GluI	GCNGC	2 cut(s)	75, 318
GsaI	CCCAGC	1 cut(s)	43
GsuI	CTGGAG	4 cut(s)	117, 203, 546, 681
HaeIII	GGCC	1 cut(s)	430
HapII	CCGG	2 cut(s)	78, 729
HhaI	GCGC	1 cut(s)	650
Hin1I	GRCGYC	1 cut(s)	609
Hin1II	CATG	2 cut(s)	334, 544
Hin6I	GCGC	1 cut(s)	648
HinP1I	GCGC	1 cut(s)	648
HinfI	GANTC	2 cut(s)	124, 147
HpaII	CCGG	2 cut(s)	78, 729
Hpy166II	GTNNAC	3 cut(s)	384, 465, 598
Hpy188I	TCNGA	1 cut(s)	637
Hpy188III	TCNNGA	6 cut(s)	134, 206, 271, 287, 707, 729
Hpy8I	GTNNAC	3 cut(s)	384, 465, 598
HpyAV	CCTTC	1 cut(s)	635
HpyCH4III	ACNGT	1 cut(s)	689
HpyCH4IV	ACGT	2 cut(s)	276, 609
HpyCH4V	TGCA	2 cut(s)	19, 598
HpyF3I	CTNAG	2 cut(s)	673, 713
HpySE526I	ACGT	2 cut(s)	276, 609
Hsp92I	GRCGYC	1 cut(s)	609
Hsp92II	CATG	2 cut(s)	334, 544
HspAI	GCGC	1 cut(s)	648
Kpn2I	TCCGGA	1 cut(s)	728
LmnI	GCTCC	2 cut(s)	28, 731
Lsp1109I	GCAGC	2 cut(s)	86, 304
MabI	ACCWGGT	1 cut(s)	116
MaeI	CTAG	2 cut(s)	339, 468
MaeII	ACGT	2 cut(s)	276, 609
MaeIII	GTNAC	2 cut(s)	617, 680
MboII	GAAGA	4 cut(s)	313, 528, 572, 637
MflI	RGATCY	7 cut(s)	157, 210, 359, 407, 440, 488, 692
MhlI	GDGCHC	6 cut(s)	188, 201, 286, 330, 600, 714
MluCI	AATT	4 cut(s)	373, 421, 454, 502
MroI	TCCGGA	1 cut(s)	728
MroXI	GAANNNNTTC	2 cut(s)	340, 579
MseI	TTAA	1 cut(s)	180
MspA1I	CMGCKG	2 cut(s)	223, 434
MspI	CCGG	2 cut(s)	78, 729
MspR9I	CCNGG	4 cut(s)	79, 118, 348, 566
MvaI	CCWGG	3 cut(s)	118, 348, 566
NciI	CCSGG	1 cut(s)	79
NcoI	CCATGG	2 cut(s)	330, 540
NdeI	CATATG	1 cut(s)	652
NlaIII	CATG	2 cut(s)	334, 544
NlaIV	GGNNCC	9 cut(s)	6, 269, 361, 382, 409, 442, 463, 490, 511
PaeR7I	CTCGAG	1 cut(s)	285
PcsI	WCGNNNNNNNCGW	1 cut(s)	606
PdmI	GAANNNNTTC	2 cut(s)	340, 579
PfeI	GAWTC	2 cut(s)	124, 147
PflMI	CCANNNNNTGG	1 cut(s)	437
PkrI	GCNGC	2 cut(s)	76, 319
Psp124BI	GAGCTC	1 cut(s)	714
Psp6I	CCWGG	3 cut(s)	116, 346, 564
PspEI	GGTNACC	1 cut(s)	617
PspFI	CCCAGC	1 cut(s)	39
PspGI	CCWGG	3 cut(s)	116, 346, 564
PspN4I	GGNNCC	9 cut(s)	6, 269, 361, 382, 409, 442, 463, 490, 511
PspPI	GGNCC	3 cut(s)	381, 428, 462
PsuI	RGATCY	7 cut(s)	157, 210, 359, 407, 440, 488, 692
PvuII	CAGCTG	2 cut(s)	223, 434
RsaI	GTAC	3 cut(s)	115, 308, 352
RsaNI	GTAC	3 cut(s)	114, 307, 351
SacI	GAGCTC	1 cut(s)	714
SaqAI	TTAA	1 cut(s)	180
SatI	GCNGC	2 cut(s)	75, 318
Sau96I	GGNCC	3 cut(s)	381, 428, 462
ScrFI	CCNGG	4 cut(s)	79, 118, 348, 566
SduI	GDGCHC	6 cut(s)	188, 201, 286, 330, 600, 714
SexAI	ACCWGGT	1 cut(s)	116
SfcI	CTRYAG	1 cut(s)	192
Sfr274I	CTCGAG	1 cut(s)	285
SinI	GGWCC	2 cut(s)	381, 462
SlaI	CTCGAG	1 cut(s)	285
SmlI	CTYRAG	4 cut(s)	152, 285, 321, 707
SmoI	CTYRAG	4 cut(s)	152, 285, 321, 707
SpeI	ACTAGT	2 cut(s)	338, 467
Sse9I	AATT	4 cut(s)	373, 421, 454, 502
SsiI	CCGC	1 cut(s)	678
SspMI	CTAG	2 cut(s)	339, 468
SstI	GAGCTC	1 cut(s)	714
StyD4I	CCNGG	4 cut(s)	77, 116, 346, 564
StyI	CCWWGG	2 cut(s)	330, 540
TaaI	ACNGT	1 cut(s)	689
TaiI	ACGT	2 cut(s)	279, 612
TaqI	TCGA	3 cut(s)	51, 286, 414
TasI	AATT	4 cut(s)	373, 421, 454, 502
TfiI	GAWTC	2 cut(s)	124, 147
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
TscAI	CASTG	2 cut(s)	391, 520
TseI	GCWGC	2 cut(s)	74, 317
TspDTI	ATGAA	1 cut(s)	314
TspGWI	ACGGA	1 cut(s)	110
TspRI	CASTG	2 cut(s)	391, 520
Van91I	CCANNNNNTGG	1 cut(s)	437
VneI	GTGCAC	1 cut(s)	596
VpaK11BI	GGWCC	2 cut(s)	381, 462
XhoI	CTCGAG	1 cut(s)	285
XmnI	GAANNNNTTC	2 cut(s)	340, 579
XspI	CTAG	2 cut(s)	339, 468
ZraI	GACGTC	1 cut(s)	610

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.