Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000649

Physical Location & Seq

Genomic Coordinates Reverse (-)

33726395 .. 33727071

Gene Structure 677 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029149

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGTCGGTGGTCAAAGCGCCGGTGGTCTGGATCGAGGAACGACGACTCGACGGCATGAGAAGACATCGAGCGGCGACGAAACTGCTCCCTTCTTCTGCTTCCTCAGTGCTGCCGCTGCTCTTGCCTTCTCCTTTAAGTCCTCCTCGATCTCCGATCCCACGAAGCAGTGAGTCTGAGGACAATGGCTTGGGCCAAAGCGGTAACATGTGCTTCATCTTCTCTATCATACTTGTTGACTTGAACTCATTTCGAAATTGTGCTTCTGATTATGAGAATTTGTTAAAGGGAGTTTTGAAGGCAATTAATGTGAACAAGATGTTTGCTGGAGGCTGCAGAGTGAAGATATGGATTCCTGATTGGTTTGCGCAGCTAAATAATCAGATGGGGCGATTTGAAGAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004812 GO:0004831 GO:0005488 GO:0005515 GO:0005524 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006437 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016597 GO:0016874 GO:0016875 GO:0017076 GO:0019538 GO:0019752 GO:0030554 GO:0031406 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034645 GO:0034660 GO:0035639 GO:0036094 GO:0042802 GO:0042803 GO:0043038 GO:0043039 GO:0043043 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043177 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0046483 GO:0046983 GO:0071704 GO:0072545 GO:0090304 GO:0097159 GO:0097367 GO:0140098 GO:0140101 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_1b

Protein Analysis

135

Amino Acids

14.96

Weight (kDa)

8.96

Isoelectric Point (pI)

70.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33840
fragaria_vesca	FvH4_2g00190 FvH4_4g18133 FvH4_4g36450 FvH4_5g02490 FvH4_5g35150 FvH4_6g35840
malus_domestica	MD04G1034100.v1.1 MD06G1084100.v1.1
prunus_persica	Prupe.2G139100_v2.0.a1 Prupe.5G096900_v2.0.a1 Prupe.5G096900_v2.0.a1 Prupe.5G100500_v2.0.a1 Prupe.5G100500_v2.0.a1 Prupe.5G100500_v2.0.a1
pyrus_communis	pycom04g02850
rosa_chinensis	RchiOBHm_Chr1g0324941 RchiOBHm_Chr1g0340751 RchiOBHm_Chr2g0133721 RchiOBHm_Chr2g0153921 RchiOBHm_Chr4g0396761 RchiOBHm_Chr4g0414291 RchiOBHm_Chr4g0429871 RchiOBHm_Chr4g0446211 RchiOBHm_Chr5g0057181 RchiOBHm_Chr5g0057391 RchiOBHm_Chr5g0077561 RchiOBHm_Chr6g0307121 RchiOBHm_Chr7g0197611
rosa_laevigata	RLG00000003922 RLG00000005681 RLG00000017313 RLG00000029149 RLG00000035152
rosa_multiflora	Rmu_co8043936.1_g000001 Rmu_sc0001164.1_g000009 Rmu_sc0001334.1_g000004 Rmu_sc0004952.1_g000011 Rmu_sc0013154.1_g000007 Rmu_sc0017650.1_g000006 Rmu_sc0018062.1_g000003
rosa_roxburghii	Rroxscaffold_1G00023030 Rroxscaffold_2G00094650 Rroxscaffold_3G00223000 Rroxscaffold_3G00232150 Rroxscaffold_3G00248030 Rroxscaffold_3G00248040 Rroxscaffold_3G00258320
rosa_rugosa	Rorug04G0184600 Rorug04G0368500 Rorug05G0306000 Rorug05G0307100 Rorug07G0041900
rosa_samantha	Rh2CG164400 Rh2DG389300 Rh3AG306800 Rh4AG430600 Rh4BG440000 Rh4CG457300 Rh4DG438500 Rh5AG375500 Rh5BG386300 Rh5CG409700 Rh5DG400300 Rh6CG481100 Rh7AG166300 Rh7AG360600 Rh7BG168400 Rh7CG174700 Rh7DG168000 Rh7DG387600
rosa_wichuraiana	Rw2G022790 Rw4G036780 Rw5G035320 Rw5G035460 Rw7G014480 Rw7G038030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	366
AccBSI	CCGCTC	1 cut(s)	71
AciI	CCGC	3 cut(s)	71, 113, 198
AclWI	GGATC	2 cut(s)	38, 148
AcsI	RAATTY	1 cut(s)	274
AflIII	ACRYGT	1 cut(s)	204
AgsI	TTSAA	3 cut(s)	241, 295, 395
AluBI	AGCT	1 cut(s)	370
AluI	AGCT	1 cut(s)	370
AlwI	GGATC	2 cut(s)	38, 148
AoxI	GGCC	1 cut(s)	190
ApeKI	GCWGC	4 cut(s)	109, 115, 330, 367
ApoI	RAATTY	1 cut(s)	274
AseI	ATTAAT	1 cut(s)	303
AspLEI	GCGC	2 cut(s)	19, 367
AspS9I	GGNCC	1 cut(s)	190
AsuII	TTCGAA	1 cut(s)	250
BbsI	GAAGAC	1 cut(s)	67
BbvI	GCAGC	4 cut(s)	96, 102, 317, 379
BccI	CCATC	1 cut(s)	376
BceAI	ACGGC	1 cut(s)	67
BcgI	CGANNNNNNTGC	2 cut(s)	64, 98
BfmI	CTRYAG	1 cut(s)	331
BfoI	RGCGCY	1 cut(s)	20
BisI	GCNGC	6 cut(s)	72, 110, 113, 116, 331, 368
BlsI	GCNGC	6 cut(s)	73, 111, 114, 117, 332, 369
BmgT120I	GGNCC	1 cut(s)	190
BpiI	GAAGAC	1 cut(s)	67
BpmI	CTGGAG	1 cut(s)	345
Bpu14I	TTCGAA	1 cut(s)	250
Bse118I	RCCGGY	1 cut(s)	19
BseMII	CTCAG	2 cut(s)	117, 165
BseRI	GAGGAG	1 cut(s)	132
BseXI	GCAGC	4 cut(s)	96, 102, 317, 379
BshFI	GGCC	1 cut(s)	192
BsiSI	CCGG	1 cut(s)	20
BsnI	GGCC	1 cut(s)	192
Bsp119I	TTCGAA	1 cut(s)	250
Bsp143I	GATC	3 cut(s)	30, 146, 153
BspACI	CCGC	3 cut(s)	71, 113, 198
BspANI	GGCC	1 cut(s)	192
BspCNI	CTCAG	2 cut(s)	116, 166
BspMAI	CTGCAG	1 cut(s)	335
BspPI	GGATC	2 cut(s)	38, 148
BspT104I	TTCGAA	1 cut(s)	250
BsrBI	CCGCTC	1 cut(s)	71
BsrFI	RCCGGY	1 cut(s)	19
BssAI	RCCGGY	1 cut(s)	19
BssMI	GATC	3 cut(s)	30, 146, 153
BstBI	TTCGAA	1 cut(s)	250
BstDEI	CTNAG	2 cut(s)	103, 174
BstH2I	RGCGCY	1 cut(s)	20
BstHHI	GCGC	2 cut(s)	19, 367
BstKTI	GATC	3 cut(s)	33, 149, 156
BstMBI	GATC	3 cut(s)	30, 146, 153
BstMWI	GCNNNNNNNGC	2 cut(s)	115, 121
BstNSI	RCATGY	1 cut(s)	208
BstSFI	CTRYAG	1 cut(s)	331
BstV1I	GCAGC	4 cut(s)	96, 102, 317, 379
BstV2I	GAAGAC	1 cut(s)	67
BsuRI	GGCC	1 cut(s)	192
BtsI	GCAGTG	1 cut(s)	172
BtsIMutI	CAGTG	2 cut(s)	111, 172
CfoI	GCGC	2 cut(s)	19, 367
Cfr10I	RCCGGY	1 cut(s)	19
Cfr13I	GGNCC	1 cut(s)	190
CviAII	CATG	2 cut(s)	55, 205
CviJI	RGCY	4 cut(s)	186, 192, 330, 370
CviKI_1	RGCY	4 cut(s)	186, 192, 330, 370
DdeI	CTNAG	2 cut(s)	103, 174
DpnI	GATC	3 cut(s)	32, 148, 155
DpnII	GATC	3 cut(s)	30, 146, 153
FaeI	CATG	2 cut(s)	58, 208
FaiI	YATR	5 cut(s)	56, 206, 227, 270, 346
FatI	CATG	2 cut(s)	54, 204
Fnu4HI	GCNGC	6 cut(s)	72, 110, 113, 116, 331, 368
Fsp4HI	GCNGC	6 cut(s)	72, 110, 113, 116, 331, 368
FspI	TGCGCA	1 cut(s)	366
GlaI	GCGC	2 cut(s)	18, 366
GluI	GCNGC	6 cut(s)	72, 110, 113, 116, 331, 368
GsuI	CTGGAG	1 cut(s)	345
HaeII	RGCGCY	1 cut(s)	20
HaeIII	GGCC	1 cut(s)	192
HapII	CCGG	1 cut(s)	20
HhaI	GCGC	2 cut(s)	19, 367
Hin1II	CATG	2 cut(s)	58, 208
Hin6I	GCGC	2 cut(s)	17, 365
HinP1I	GCGC	2 cut(s)	17, 365
HincII	GTYRAC	1 cut(s)	235
HindII	GTYRAC	1 cut(s)	235
HinfI	GANTC	3 cut(s)	45, 170, 349
HpaII	CCGG	1 cut(s)	20
Hpy166II	GTNNAC	2 cut(s)	235, 310
Hpy188I	TCNGA	4 cut(s)	153, 175, 265, 381
Hpy188III	TCNNGA	2 cut(s)	28, 353
Hpy8I	GTNNAC	2 cut(s)	235, 310
Hpy99I	CGWCG	3 cut(s)	45, 53, 79
HpyAV	CCTTC	3 cut(s)	99, 135, 289
HpyCH4V	TGCA	1 cut(s)	333
HpyF10VI	GCNNNNNNNGC	2 cut(s)	115, 121
HpyF3I	CTNAG	2 cut(s)	103, 174
Hsp92II	CATG	2 cut(s)	58, 208
HspAI	GCGC	2 cut(s)	17, 365
Kzo9I	GATC	3 cut(s)	30, 146, 153
LmnI	GCTCC	1 cut(s)	90
LpnPI	CCDG	4 cut(s)	13, 33, 309, 366
Lsp1109I	GCAGC	4 cut(s)	96, 102, 317, 379
MaeIII	GTNAC	1 cut(s)	200
MalI	GATC	3 cut(s)	32, 148, 155
MbiI	CCGCTC	1 cut(s)	71
MboI	GATC	3 cut(s)	30, 146, 153
MboII	GAAGA	4 cut(s)	72, 84, 208, 352
MluCI	AATT	3 cut(s)	253, 274, 300
MlyI	GAGTC	2 cut(s)	39, 179
MnlI	CCTC	6 cut(s)	28, 112, 150, 153, 169, 320
MseI	TTAA	3 cut(s)	134, 281, 303
MspA1I	CMGCKG	1 cut(s)	115
MspI	CCGG	1 cut(s)	20
MwoI	GCNNNNNNNGC	2 cut(s)	115, 121
NdeII	GATC	3 cut(s)	30, 146, 153
NlaIII	CATG	2 cut(s)	58, 208
NsbI	TGCGCA	1 cut(s)	366
NspI	RCATGY	1 cut(s)	208
NspV	TTCGAA	1 cut(s)	250
PciI	ACATGT	1 cut(s)	204
PfeI	GAWTC	1 cut(s)	349
PkrI	GCNGC	6 cut(s)	73, 111, 114, 117, 332, 369
PleI	GAGTC	2 cut(s)	39, 178
PpsI	GAGTC	2 cut(s)	39, 178
PscI	ACATGT	1 cut(s)	204
PshBI	ATTAAT	1 cut(s)	303
PspPI	GGNCC	1 cut(s)	190
PstI	CTGCAG	1 cut(s)	335
SaqAI	TTAA	3 cut(s)	134, 281, 303
SatI	GCNGC	6 cut(s)	72, 110, 113, 116, 331, 368
Sau3AI	GATC	3 cut(s)	30, 146, 153
Sau96I	GGNCC	1 cut(s)	190
SchI	GAGTC	2 cut(s)	39, 179
SetI	ASST	1 cut(s)	372
SfcI	CTRYAG	1 cut(s)	331
SfuI	TTCGAA	1 cut(s)	250
SgrAI	CRCCGGYG	1 cut(s)	19
Sse9I	AATT	3 cut(s)	253, 274, 300
SsiI	CCGC	3 cut(s)	71, 113, 198
TaqI	TCGA	5 cut(s)	33, 48, 67, 145, 250
TasI	AATT	3 cut(s)	253, 274, 300
TauI	GCSGC	2 cut(s)	74, 115
TfiI	GAWTC	1 cut(s)	349
Tru1I	TTAA	3 cut(s)	134, 281, 303
Tru9I	TTAA	3 cut(s)	134, 281, 303
TscAI	CASTG	2 cut(s)	111, 172
TseI	GCWGC	4 cut(s)	109, 115, 330, 367
TspDTI	ATGAA	1 cut(s)	202
TspRI	CASTG	2 cut(s)	111, 172
VspI	ATTAAT	1 cut(s)	303
XapI	RAATTY	1 cut(s)	274
XceI	RCATGY	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.