RchiOBHm_Chr1g0324941

Belongs to the class-I aminoacyl-tRNA synthetase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
12697473 .. 12697767
295 bp
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UTR
Exon/CDS
Intron
PRQ55474

Sequence Viewer

Length: 129 bp
ATGGCTTGGGCAGAAGCGGGAGTTTTGAAGGCAATTAATGTGAATAAGGTGTTTGCTGGAGGCTGCAGAGTGAAGATATGGATTCCCAATTCGTTTGCACGGCTAAATAATCAGACGGGGGCGATTTGA

Protein Analysis

42

Amino Acids

4.53

Weight (kDa)

10.31

Isoelectric Point (pI)

4.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000649)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33840
fragaria_vesca FvH4_2g00190 FvH4_4g18133 FvH4_4g36450 FvH4_5g02490 FvH4_5g35150 FvH4_6g35840
malus_domestica MD04G1034100.v1.1 MD06G1084100.v1.1
prunus_persica Prupe.2G139100_v2.0.a1 Prupe.5G096900_v2.0.a1 Prupe.5G096900_v2.0.a1 Prupe.5G100500_v2.0.a1 Prupe.5G100500_v2.0.a1 Prupe.5G100500_v2.0.a1
pyrus_communis pycom04g02850
rosa_chinensis RchiOBHm_Chr1g0324941 RchiOBHm_Chr1g0340751 RchiOBHm_Chr2g0133721 RchiOBHm_Chr2g0153921 RchiOBHm_Chr4g0396761 RchiOBHm_Chr4g0414291 RchiOBHm_Chr4g0429871 RchiOBHm_Chr4g0446211 RchiOBHm_Chr5g0057181 RchiOBHm_Chr5g0057391 RchiOBHm_Chr5g0077561 RchiOBHm_Chr6g0307121 RchiOBHm_Chr7g0197611
rosa_laevigata RLG00000003922 RLG00000005681 RLG00000017313 RLG00000029149 RLG00000035152
rosa_multiflora Rmu_co8043936.1_g000001 Rmu_sc0001164.1_g000009 Rmu_sc0001334.1_g000004 Rmu_sc0004952.1_g000011 Rmu_sc0013154.1_g000007 Rmu_sc0017650.1_g000006 Rmu_sc0018062.1_g000003
rosa_roxburghii Rroxscaffold_1G00023030 Rroxscaffold_2G00094650 Rroxscaffold_3G00223000 Rroxscaffold_3G00232150 Rroxscaffold_3G00248030 Rroxscaffold_3G00248040 Rroxscaffold_3G00258320
rosa_rugosa Rorug04G0184600 Rorug04G0368500 Rorug05G0306000 Rorug05G0307100 Rorug07G0041900
rosa_samantha Rh2CG164400 Rh2DG389300 Rh3AG306800 Rh4AG430600 Rh4BG440000 Rh4CG457300 Rh4DG438500 Rh5AG375500 Rh5BG386300 Rh5CG409700 Rh5DG400300 Rh6CG481100 Rh7AG166300 Rh7AG360600 Rh7BG168400 Rh7CG174700 Rh7DG168000 Rh7DG387600
rosa_wichuraiana Rw2G022790 Rw4G036780 Rw5G035320 Rw5G035460 Rw7G014480 Rw7G038030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 17
AgsI TTSAA 1 cut(s) 28
ApeKI GCWGC 1 cut(s) 63
AseI ATTAAT 1 cut(s) 36
BbvI GCAGC 1 cut(s) 50
BceAI ACGGC 1 cut(s) 116
BfmI CTRYAG 1 cut(s) 64
BisI GCNGC 1 cut(s) 64
BlsI GCNGC 1 cut(s) 65
BpmI CTGGAG 1 cut(s) 78
BseXI GCAGC 1 cut(s) 50
BspACI CCGC 1 cut(s) 17
BspMAI CTGCAG 1 cut(s) 68
BstSFI CTRYAG 1 cut(s) 64
BstV1I GCAGC 1 cut(s) 50
CviJI RGCY 3 cut(s) 5, 63, 103
CviKI_1 RGCY 3 cut(s) 5, 63, 103
FaiI YATR 1 cut(s) 79
FauI CCCGC 1 cut(s) 10
Fnu4HI GCNGC 1 cut(s) 64
Fsp4HI GCNGC 1 cut(s) 64
GluI GCNGC 1 cut(s) 64
GsuI CTGGAG 1 cut(s) 78
HinfI GANTC 1 cut(s) 82
Hpy188I TCNGA 1 cut(s) 114
HpyAV CCTTC 1 cut(s) 22
HpyCH4V TGCA 2 cut(s) 66, 98
LpnPI CCDG 1 cut(s) 42
Lsp1109I GCAGC 1 cut(s) 50
MboII GAAGA 1 cut(s) 85
MluCI AATT 2 cut(s) 33, 88
MnlI CCTC 1 cut(s) 53
MseI TTAA 1 cut(s) 36
PfeI GAWTC 1 cut(s) 82
PkrI GCNGC 1 cut(s) 65
PshBI ATTAAT 1 cut(s) 36
PstI CTGCAG 1 cut(s) 68
SaqAI TTAA 1 cut(s) 36
SatI GCNGC 1 cut(s) 64
SetI ASST 1 cut(s) 51
SfcI CTRYAG 1 cut(s) 64
SgeI CNNG 4 cut(s) 18, 30, 69, 111
Sse9I AATT 2 cut(s) 33, 88
SsiI CCGC 1 cut(s) 17
TasI AATT 2 cut(s) 33, 88
TfiI GAWTC 1 cut(s) 82
Tru1I TTAA 1 cut(s) 36
Tru9I TTAA 1 cut(s) 36
TseI GCWGC 1 cut(s) 63
VspI ATTAAT 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.