Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000649

Physical Location & Seq

Genomic Coordinates Forward (+)

52920767 .. 52944078

Gene Structure 23312 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG387600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGGCGATTTGAAGAAGATTGAGATAGTGCGGATGTATTTTATTGAGATATGGAGGTCTGTGGGGATGAATCTGGACAATGGGAAAGTTGAGTTTCTGTGGTCTTCTAAGGAGATCAATGCCAGGTCACATGAGTACTGGCTGTGTGTAATGGATATTGCCAGGAAAAACAATCTTCCGAGGATCATTAGGTGCAGTCAAATTATGGGTCGAATGGATCAAGAAGAGTTAACAGCTGCCCAGATCCTCTACCCGTGTATGCAATGTGCAGATATTTTCTTCCTGCAGGCTGACATTTGTCAACTCAGTATGGATCAACGTAAAGTGAATGTGCTTGCACGAGAGTACTGTGATGACATCAAGAAGAAAAACAAGCCCATTATCTTGTCACACCGGGCTGATCTTTCCGATGCTGATCTAAGGGGTATAGACTTATCATTGGCCAATGTGACAAAGGTAAATTTGAGCAATGCTAACTTGGAAGGTGCATTTACTACAGGAAACACGTCTTTAAAAAGATTAACTGCCACTTCCAAAGATCAACACTCCAAAGTTGCCAGAATACACCAAGGACTGGAAACTCAAGTTACAAGTATTTTTATCTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004812 GO:0004831 GO:0005488 GO:0005515 GO:0005524 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006437 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016597 GO:0016874 GO:0016875 GO:0017076 GO:0019538 GO:0019752 GO:0030554 GO:0031406 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034645 GO:0034660 GO:0035639 GO:0036094 GO:0042802 GO:0042803 GO:0043038 GO:0043039 GO:0043043 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043177 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0046483 GO:0046983 GO:0071704 GO:0072545 GO:0090304 GO:0097159 GO:0097367 GO:0140098 GO:0140101 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_1b

Protein Analysis

202

Amino Acids

23.1

Weight (kDa)

8.51

Isoelectric Point (pI)

27.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1b	PF00579	22 - 132	1.4e-20	tRNA synthetases class I (W and Y)
Pentapeptide	PF00805	132 - 163	1.2e-07	Pentapeptide repeats (8 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33840
fragaria_vesca	FvH4_2g00190 FvH4_4g18133 FvH4_4g36450 FvH4_5g02490 FvH4_5g35150 FvH4_6g35840
malus_domestica	MD04G1034100.v1.1 MD06G1084100.v1.1
prunus_persica	Prupe.2G139100_v2.0.a1 Prupe.5G096900_v2.0.a1 Prupe.5G096900_v2.0.a1 Prupe.5G100500_v2.0.a1 Prupe.5G100500_v2.0.a1 Prupe.5G100500_v2.0.a1
pyrus_communis	pycom04g02850
rosa_chinensis	RchiOBHm_Chr1g0324941 RchiOBHm_Chr1g0340751 RchiOBHm_Chr2g0133721 RchiOBHm_Chr2g0153921 RchiOBHm_Chr4g0396761 RchiOBHm_Chr4g0414291 RchiOBHm_Chr4g0429871 RchiOBHm_Chr4g0446211 RchiOBHm_Chr5g0057181 RchiOBHm_Chr5g0057391 RchiOBHm_Chr5g0077561 RchiOBHm_Chr6g0307121 RchiOBHm_Chr7g0197611
rosa_laevigata	RLG00000003922 RLG00000005681 RLG00000017313 RLG00000029149 RLG00000035152
rosa_multiflora	Rmu_co8043936.1_g000001 Rmu_sc0001164.1_g000009 Rmu_sc0001334.1_g000004 Rmu_sc0004952.1_g000011 Rmu_sc0013154.1_g000007 Rmu_sc0017650.1_g000006 Rmu_sc0018062.1_g000003
rosa_roxburghii	Rroxscaffold_1G00023030 Rroxscaffold_2G00094650 Rroxscaffold_3G00223000 Rroxscaffold_3G00232150 Rroxscaffold_3G00248030 Rroxscaffold_3G00248040 Rroxscaffold_3G00258320
rosa_rugosa	Rorug04G0184600 Rorug04G0368500 Rorug05G0306000 Rorug05G0307100 Rorug07G0041900
rosa_samantha	Rh2CG164400 Rh2DG389300 Rh3AG306800 Rh4AG430600 Rh4BG440000 Rh4CG457300 Rh4DG438500 Rh5AG375500 Rh5BG386300 Rh5CG409700 Rh5DG400300 Rh6CG481100 Rh7AG166300 Rh7AG360600 Rh7BG168400 Rh7CG174700 Rh7DG168000 Rh7DG387600
rosa_wichuraiana	Rw2G022790 Rw4G036780 Rw5G035320 Rw5G035460 Rw7G014480 Rw7G038030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	607
AccB7I	CCANNNNNTGG	1 cut(s)	574
AciI	CCGC	1 cut(s)	31
AclWI	GGATC	4 cut(s)	191, 225, 238, 321
AcoI	YGGCCR	1 cut(s)	441
AcsI	RAATTY	1 cut(s)	460
AfaI	GTAC	2 cut(s)	137, 347
AfiI	CCNNNNNNNGG	1 cut(s)	574
AflIII	ACRYGT	1 cut(s)	504
AgsI	TTSAA	1 cut(s)	13
AjiI	CACGTC	1 cut(s)	507
AjnI	CCWGG	2 cut(s)	122, 161
AluBI	AGCT	1 cut(s)	236
AluI	AGCT	1 cut(s)	236
AlwI	GGATC	4 cut(s)	191, 225, 238, 321
AoxI	GGCC	1 cut(s)	441
ApeKI	GCWGC	1 cut(s)	236
ApoI	RAATTY	1 cut(s)	460
ArsI	GACNNNNNNTTYG	2 cut(s)	193, 225
AsuC2I	CCSGG	1 cut(s)	395
BalI	TGGCCA	1 cut(s)	443
BauI	CACGAG	1 cut(s)	339
BbsI	GAAGAC	1 cut(s)	96
BbvI	GCAGC	1 cut(s)	223
BciT130I	CCWGG	2 cut(s)	124, 163
BcnI	CCSGG	1 cut(s)	395
BfmI	CTRYAG	2 cut(s)	284, 495
BisI	GCNGC	1 cut(s)	237
BlsI	GCNGC	1 cut(s)	238
BmcAI	AGTACT	2 cut(s)	137, 347
Bme1390I	CCNGG	3 cut(s)	124, 163, 395
BmgBI	CACGTC	1 cut(s)	507
BmrFI	CCNGG	3 cut(s)	124, 163, 395
BmsI	GCATC	1 cut(s)	400
BoxI	GACNNNNGTC	1 cut(s)	297
BpiI	GAAGAC	1 cut(s)	96
BpuEI	CTTGAG	1 cut(s)	567
BpuMI	CCSGG	1 cut(s)	395
BsaBI	GATNNNNATC	1 cut(s)	414
BsaJI	CCNNGG	2 cut(s)	179, 568
Bsc4I	CCNNNNNNNGG	1 cut(s)	574
Bse1I	ACTGG	2 cut(s)	143, 579
Bse3DI	GCAATG	2 cut(s)	269, 475
Bse8I	GATNNNNATC	1 cut(s)	414
BseBI	CCWGG	2 cut(s)	124, 163
BseDI	CCNNGG	2 cut(s)	179, 568
BseGI	GGATG	2 cut(s)	39, 72
BseJI	GATNNNNATC	1 cut(s)	414
BseLI	CCNNNNNNNGG	1 cut(s)	574
BseMI	GCAATG	2 cut(s)	269, 475
BseMII	CTCAG	1 cut(s)	319
BseNI	ACTGG	2 cut(s)	143, 579
BseXI	GCAGC	1 cut(s)	223
BsgI	GTGCAG	2 cut(s)	214, 288
BshFI	GGCC	1 cut(s)	443
BsiSI	CCGG	1 cut(s)	394
BslI	CCNNNNNNNGG	1 cut(s)	574
BsnI	GGCC	1 cut(s)	443
Bsp143I	GATC	8 cut(s)	114, 183, 217, 243, 313, 400, 415, 538
BspACI	CCGC	1 cut(s)	31
BspANI	GGCC	1 cut(s)	443
BspCNI	CTCAG	1 cut(s)	318
BspMAI	CTGCAG	1 cut(s)	288
BspPI	GGATC	4 cut(s)	191, 225, 238, 321
BsrDI	GCAATG	2 cut(s)	269, 475
BsrI	ACTGG	2 cut(s)	143, 579
BssECI	CCNNGG	2 cut(s)	179, 568
BssMI	GATC	8 cut(s)	114, 183, 217, 243, 313, 400, 415, 538
BssSI	CACGAG	1 cut(s)	339
BssT1I	CCWWGG	1 cut(s)	568
Bst2BI	CACGAG	1 cut(s)	339
Bst2UI	CCWGG	2 cut(s)	124, 163
Bst4CI	ACNGT	1 cut(s)	350
Bst6I	CTCTTC	1 cut(s)	219
BstC8I	GCNNGC	2 cut(s)	288, 336
BstDEI	CTNAG	3 cut(s)	108, 305, 419
BstF5I	GGATG	2 cut(s)	39, 72
BstKTI	GATC	8 cut(s)	117, 186, 220, 246, 316, 403, 418, 541
BstMBI	GATC	8 cut(s)	114, 183, 217, 243, 313, 400, 415, 538
BstNI	CCWGG	2 cut(s)	124, 163
BstPAI	GACNNNNGTC	1 cut(s)	297
BstSCI	CCNGG	3 cut(s)	122, 161, 393
BstSFI	CTRYAG	2 cut(s)	284, 495
BstV1I	GCAGC	1 cut(s)	223
BstV2I	GAAGAC	1 cut(s)	96
BstX2I	RGATCY	1 cut(s)	243
BstYI	RGATCY	1 cut(s)	243
BsuRI	GGCC	1 cut(s)	443
BtrI	CACGTC	1 cut(s)	507
BtsCI	GGATG	2 cut(s)	39, 72
Cac8I	GCNNGC	2 cut(s)	288, 336
Csp6I	GTAC	2 cut(s)	136, 346
CviAII	CATG	1 cut(s)	131
CviJI	RGCY	6 cut(s)	142, 236, 290, 376, 398, 443
CviKI_1	RGCY	6 cut(s)	142, 236, 290, 376, 398, 443
CviQI	GTAC	2 cut(s)	136, 346
DdeI	CTNAG	3 cut(s)	108, 305, 419
DpnI	GATC	8 cut(s)	116, 185, 219, 245, 315, 402, 417, 540
DpnII	GATC	8 cut(s)	114, 183, 217, 243, 313, 400, 415, 538
DraI	TTTAAA	1 cut(s)	513
EaeI	YGGCCR	1 cut(s)	441
Eam1104I	CTCTTC	1 cut(s)	219
EarI	CTCTTC	1 cut(s)	219
Eco130I	CCWWGG	1 cut(s)	568
EcoRII	CCWGG	2 cut(s)	122, 161
EcoT14I	CCWWGG	1 cut(s)	568
ErhI	CCWWGG	1 cut(s)	568
FaeI	CATG	1 cut(s)	134
FaiI	YATR	7 cut(s)	52, 132, 206, 260, 311, 428, 607
FatI	CATG	1 cut(s)	130
Fnu4HI	GCNGC	1 cut(s)	237
FokI	GGATG	2 cut(s)	46, 79
Fsp4HI	GCNGC	1 cut(s)	237
GluI	GCNGC	1 cut(s)	237
HaeIII	GGCC	1 cut(s)	443
HapII	CCGG	1 cut(s)	394
Hin1II	CATG	1 cut(s)	134
HincII	GTYRAC	2 cut(s)	231, 302
HindII	GTYRAC	2 cut(s)	231, 302
HinfI	GANTC	1 cut(s)	70
HpaI	GTTAAC	1 cut(s)	231
HpaII	CCGG	1 cut(s)	394
Hpy166II	GTNNAC	2 cut(s)	231, 302
Hpy188I	TCNGA	2 cut(s)	180, 409
Hpy188III	TCNNGA	3 cut(s)	74, 221, 361
Hpy8I	GTNNAC	2 cut(s)	231, 302
HpyAV	CCTTC	1 cut(s)	476
HpyCH4III	ACNGT	1 cut(s)	350
HpyCH4IV	ACGT	2 cut(s)	319, 506
HpyCH4V	TGCA	6 cut(s)	195, 262, 269, 286, 338, 488
HpyF3I	CTNAG	3 cut(s)	108, 305, 419
HpySE526I	ACGT	2 cut(s)	319, 506
Hsp92II	CATG	1 cut(s)	134
KspAI	GTTAAC	1 cut(s)	231
Kzo9I	GATC	8 cut(s)	114, 183, 217, 243, 313, 400, 415, 538
Lsp1109I	GCAGC	1 cut(s)	223
LweI	GCATC	1 cut(s)	400
MaeII	ACGT	2 cut(s)	319, 506
MaeIII	GTNAC	4 cut(s)	126, 387, 448, 586
MalI	GATC	8 cut(s)	116, 185, 219, 245, 315, 402, 417, 540
MboI	GATC	8 cut(s)	114, 183, 217, 243, 313, 400, 415, 538
MboII	GAAGA	7 cut(s)	25, 28, 96, 167, 236, 271, 376
MflI	RGATCY	1 cut(s)	243
MlsI	TGGCCA	1 cut(s)	443
MluCI	AATT	2 cut(s)	201, 460
MluNI	TGGCCA	1 cut(s)	443
MnlI	CCTC	3 cut(s)	48, 174, 257
Mox20I	TGGCCA	1 cut(s)	443
MscI	TGGCCA	1 cut(s)	443
MseI	TTAA	3 cut(s)	230, 512, 521
Msp20I	TGGCCA	1 cut(s)	443
MspA1I	CMGCKG	1 cut(s)	236
MspI	CCGG	1 cut(s)	394
MspR9I	CCNGG	3 cut(s)	124, 163, 395
MvaI	CCWGG	2 cut(s)	124, 163
NciI	CCSGG	1 cut(s)	395
NdeII	GATC	8 cut(s)	114, 183, 217, 243, 313, 400, 415, 538
NlaIII	CATG	1 cut(s)	134
NmuCI	GTSAC	3 cut(s)	126, 387, 448
PfeI	GAWTC	1 cut(s)	70
PflMI	CCANNNNNTGG	1 cut(s)	574
PkrI	GCNGC	1 cut(s)	238
PshAI	GACNNNNGTC	1 cut(s)	297
PsiI	TTATAA	1 cut(s)	607
Psp6I	CCWGG	2 cut(s)	122, 161
PspGI	CCWGG	2 cut(s)	122, 161
PstI	CTGCAG	1 cut(s)	288
PsuI	RGATCY	1 cut(s)	243
PvuII	CAGCTG	1 cut(s)	236
RsaI	GTAC	2 cut(s)	137, 347
RsaNI	GTAC	2 cut(s)	136, 346
SaqAI	TTAA	3 cut(s)	230, 512, 521
SatI	GCNGC	1 cut(s)	237
Sau3AI	GATC	8 cut(s)	114, 183, 217, 243, 313, 400, 415, 538
SbfI	CCTGCAGG	1 cut(s)	288
ScaI	AGTACT	2 cut(s)	137, 347
ScrFI	CCNGG	3 cut(s)	124, 163, 395
SdaI	CCTGCAGG	1 cut(s)	288
SetI	ASST	8 cut(s)	59, 128, 194, 238, 322, 459, 487, 509
SfaNI	GCATC	1 cut(s)	400
SfcI	CTRYAG	2 cut(s)	284, 495
SmlI	CTYRAG	1 cut(s)	582
SmoI	CTYRAG	1 cut(s)	582
Sse8387I	CCTGCAGG	1 cut(s)	288
Sse9I	AATT	2 cut(s)	201, 460
SsiI	CCGC	1 cut(s)	31
StyD4I	CCNGG	3 cut(s)	122, 161, 393
StyI	CCWWGG	1 cut(s)	568
TaaI	ACNGT	1 cut(s)	350
TaiI	ACGT	2 cut(s)	322, 509
TaqI	TCGA	1 cut(s)	211
TasI	AATT	2 cut(s)	201, 460
TatI	WGTACW	2 cut(s)	135, 345
TfiI	GAWTC	1 cut(s)	70
Tru1I	TTAA	3 cut(s)	230, 512, 521
Tru9I	TTAA	3 cut(s)	230, 512, 521
TseFI	GTSAC	3 cut(s)	126, 387, 448
TseI	GCWGC	1 cut(s)	236
Tsp45I	GTSAC	3 cut(s)	126, 387, 448
TspDTI	ATGAA	1 cut(s)	83
Van91I	CCANNNNNTGG	1 cut(s)	574
XapI	RAATTY	1 cut(s)	460
ZrmI	AGTACT	2 cut(s)	137, 347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.