Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000649

Physical Location & Seq

Genomic Coordinates Forward (+)

2949558 .. 2951731

Gene Structure 2174 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0041900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1644 bp

ATGTCTACCCGCGTCTTTCTCCTCACACTCGCTCTCTGCATCTCTCTTTCCTCCGCCTCCGCCGGCCGCTTCCGCTCCATCCCCAAGCCCACCGCCACCGCCGCCGTATCTCCGATCCAACAAGCCTGCAAAGCCACCCGCTTCCCTGACACATGTCAGGCCTCCCTGACCAAAAAAATCCATGACCTTCCCCCAAACCCTACCCCTCTCCAAACACTTCAACTAGCCCTCAATGTCTCCTCCGACGGCCTCAACACCGCCAAAAAGATGGTTTCCGACATTCTCAAAACCGCCGCCGGCAGCCAGAACCGCACAACCGCCGCCAAAAACTGCCTCGATTTTCTACAAAATTCCGAGTACCGTATTTCACTCACCAATGACGGCCTCTCACGTGGCCGTACCAAGACCGCACGAGCCGCCATGAGCTCCGCCCTGATGTTCCAGTACGACTGCTGGTCCGCATTCAAGTACGCCAACGACACCCAGTTGGTCGTCTCCACCATGTCGTTCATTAACGACACGCTGACCGTGGACTCCAGCAACGCCCTTAGCATGATCTTCTCCTACGAAAACTTCGGAAACGACACCAAGTCCTGGACCCCGCCCAAGACCGAGCGCGACGGGTTCTGGGAACCCGTCACGCCTGGATCACAAAAGTCCCCTCCAGAACTTTCGATACCGGAAAATCTGACGGTGGACGTGACTGTTTGCAAGGACAAAGGTGTTAAGTGTTACCGGACCATACAGGAGGCGGTGAACGCGGCGCCGGAAAACTCCGACAAGAAATTCGTGATTCAGATAAATGCCGGGGTGTATGAAGAGATTGTTAAGGTTCCTCTAGGGAAGAGAAATGTTGTGTTTTTAGGGCAAGGGATGGGCAAAACAGTAATTACAGGATCTTTGTTTGTGGGCCAGCCGGGAATTTCGACCTACAACTCTGCCACCGTGGGTGTTTACGGCGACGGCTTCATGGCCAGAGGCGTCACATTCCAAAACACGGCGGGCCCCGACGCCCAGCAGGAGGTTCACCAGGCGGTGGCTTTCCGATCAGACAGTGATCACTCTATCATAGAAAATTGTGAGTTCCTAGGGCACCAAGACACTCTCTACGCCCATGGCAACCGCCAGTTCTACAAGTCATGCAAAATTCAAGGCAATGTAGATTTTATATTTGGAAACTCGGCTGCCATTTTCGAGGGCTGCACCATCCTCATTGCGCCGAGGCAAGTTAACCCCGAAAAAGGCGAGAAGAATGCAGTGACGGCTCACGGCAGGACGGACCCGGCGCAGGCGACAGGGTTCGTGTTCCGGAACTGCTTCATAAACGGAACGGAAGAGTACATGAAGTTGTACAACACTAACCCCAAAGTTCACTTGAACTTCTTGGGGAGGCCGTGGAAGGAGTTTTCGAGGACGGTGTTCTTGAACTGTAGTATGGAAGCTCTGGTTTCGAAAGAAGGGTGGTTGCCTTGGAGTGAGGAGTTTGCTTTGGCGACGCTTTACTATGGGGAGTATGGGAACTCGGGACCGGGGGTGGATTTGGCCGGGAGGGTGAAGTGGAGTAGCCGGATTCCGGTAGAGCATGTTGGTGCATATTCGGTGCAAAATTTTATTCAGGGAGATGAGTGGTTGGTTTCCAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004812 GO:0004831 GO:0005488 GO:0005515 GO:0005524 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006437 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016597 GO:0016874 GO:0016875 GO:0017076 GO:0019538 GO:0019752 GO:0030554 GO:0031406 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034645 GO:0034660 GO:0035639 GO:0036094 GO:0042802 GO:0042803 GO:0043038 GO:0043039 GO:0043043 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043177 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0046483 GO:0046983 GO:0071704 GO:0072545 GO:0090304 GO:0097159 GO:0097367 GO:0140098 GO:0140101 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_1b

Protein Analysis

547

Amino Acids

59.98

Weight (kDa)

7.89

Isoelectric Point (pI)

28.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMEI	PF04043	39 - 185	3.1e-19	Plant invertase/pectin methylesterase inhibitor
Pectinesterase	PF01095	233 - 541	1.5e-112	Pectinesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33840
fragaria_vesca	FvH4_2g00190 FvH4_4g18133 FvH4_4g36450 FvH4_5g02490 FvH4_5g35150 FvH4_6g35840
malus_domestica	MD04G1034100.v1.1 MD06G1084100.v1.1
prunus_persica	Prupe.2G139100_v2.0.a1 Prupe.5G096900_v2.0.a1 Prupe.5G096900_v2.0.a1 Prupe.5G100500_v2.0.a1 Prupe.5G100500_v2.0.a1 Prupe.5G100500_v2.0.a1
pyrus_communis	pycom04g02850
rosa_chinensis	RchiOBHm_Chr1g0324941 RchiOBHm_Chr1g0340751 RchiOBHm_Chr2g0133721 RchiOBHm_Chr2g0153921 RchiOBHm_Chr4g0396761 RchiOBHm_Chr4g0414291 RchiOBHm_Chr4g0429871 RchiOBHm_Chr4g0446211 RchiOBHm_Chr5g0057181 RchiOBHm_Chr5g0057391 RchiOBHm_Chr5g0077561 RchiOBHm_Chr6g0307121 RchiOBHm_Chr7g0197611
rosa_laevigata	RLG00000003922 RLG00000005681 RLG00000017313 RLG00000029149 RLG00000035152
rosa_multiflora	Rmu_co8043936.1_g000001 Rmu_sc0001164.1_g000009 Rmu_sc0001334.1_g000004 Rmu_sc0004952.1_g000011 Rmu_sc0013154.1_g000007 Rmu_sc0017650.1_g000006 Rmu_sc0018062.1_g000003
rosa_roxburghii	Rroxscaffold_1G00023030 Rroxscaffold_2G00094650 Rroxscaffold_3G00223000 Rroxscaffold_3G00232150 Rroxscaffold_3G00248030 Rroxscaffold_3G00248040 Rroxscaffold_3G00258320
rosa_rugosa	Rorug04G0184600 Rorug04G0368500 Rorug05G0306000 Rorug05G0307100 Rorug07G0041900
rosa_samantha	Rh2CG164400 Rh2DG389300 Rh3AG306800 Rh4AG430600 Rh4BG440000 Rh4CG457300 Rh4DG438500 Rh5AG375500 Rh5BG386300 Rh5CG409700 Rh5DG400300 Rh6CG481100 Rh7AG166300 Rh7AG360600 Rh7BG168400 Rh7CG174700 Rh7DG168000 Rh7DG387600
rosa_wichuraiana	Rw2G022790 Rw4G036780 Rw5G035320 Rw5G035460 Rw7G014480 Rw7G038030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	763, 1092
AccB7I	CCANNNNNTGG	2 cut(s)	594, 1036
AccBSI	CCGCTC	1 cut(s)	75
AccI	GTMKAC	1 cut(s)	5
AccII	CGCG	3 cut(s)	12, 618, 761
AccIII	TCCGGA	1 cut(s)	1308
AclWI	GGATC	3 cut(s)	109, 655, 904
AcoI	YGGCCR	4 cut(s)	64, 394, 972, 1542
AcsI	RAATTY	5 cut(s)	349, 785, 921, 1146, 1606
AcvI	CACGTG	1 cut(s)	392
AcyI	GRCGYC	3 cut(s)	764, 981, 1011
AfaI	GTAC	6 cut(s)	359, 400, 446, 470, 1340, 1352
AfiI	CCNNNNNNNGG	7 cut(s)	594, 997, 1021, 1036, 1241, 1288, 1573
AflIII	ACRYGT	1 cut(s)	152
AgsI	TTSAA	5 cut(s)	221, 466, 1151, 1378, 1426
AhdI	GACNNNNNGTC	2 cut(s)	454, 589
AjiI	CACGTC	1 cut(s)	700
AjnI	CCWGG	3 cut(s)	593, 643, 1029
AluBI	AGCT	2 cut(s)	426, 1442
AluI	AGCT	2 cut(s)	426, 1442
Alw21I	GWGCWC	1 cut(s)	428
Alw26I	GTCTC	2 cut(s)	241, 499
AlwI	GGATC	3 cut(s)	109, 655, 904
Ama87I	CYCGRG	1 cut(s)	1522
Aor13HI	TCCGGA	1 cut(s)	1308
ApaI	GGGCCC	1 cut(s)	1007
ApeKI	GCWGC	3 cut(s)	300, 1184, 1200
ApoI	RAATTY	5 cut(s)	349, 785, 921, 1146, 1606
ArsI	GACNNNNNNTTYG	2 cut(s)	770, 802
Asp700I	GAANNNNTTC	1 cut(s)	1316
AspA2I	CCTAGG	1 cut(s)	1087
AspLEI	GCGC	4 cut(s)	618, 766, 1219, 1288
AspS9I	GGNCC	8 cut(s)	456, 597, 738, 910, 1003, 1004, 1279, 1526
AsuC2I	CCSGG	5 cut(s)	808, 918, 1283, 1530, 1546
AsuHPI	GGTGA	4 cut(s)	364, 766, 1019, 1564
AsuII	TTCGAA	1 cut(s)	1451
AvaI	CYCGRG	1 cut(s)	1522
AvaII	GGWCC	5 cut(s)	456, 597, 738, 1279, 1526
AvrII	CCTAGG	1 cut(s)	1087
BaeGI	GKGCMC	2 cut(s)	1007, 1095
BalI	TGGCCA	1 cut(s)	974
BanI	GGYRCC	2 cut(s)	763, 1092
BanII	GRGCYC	2 cut(s)	428, 1007
BauI	CACGAG	1 cut(s)	411
BbrPI	CACGTG	1 cut(s)	392
Bbv12I	GWGCWC	1 cut(s)	428
BbvI	GCAGC	3 cut(s)	312, 1171, 1187
BccI	CCATC	4 cut(s)	86, 262, 868, 1214
BcgI	CGANNNNNNTGC	2 cut(s)	1235, 1269
BciT130I	CCWGG	3 cut(s)	595, 645, 1031
BclI	TGATCA	1 cut(s)	1057
BcnI	CCSGG	5 cut(s)	808, 918, 1283, 1530, 1546
BcoDI	GTCTC	2 cut(s)	241, 499
BfaI	CTAG	4 cut(s)	224, 839, 1088, 1642
BfmI	CTRYAG	1 cut(s)	1429
BfoI	RGCGCY	1 cut(s)	767
BisI	GCNGC	9 cut(s)	67, 102, 294, 301, 321, 417, 762, 1185, 1201
BlnI	CCTAGG	1 cut(s)	1087
BlsI	GCNGC	9 cut(s)	68, 103, 295, 302, 322, 418, 763, 1186, 1202
Bme1390I	CCNGG	8 cut(s)	595, 645, 808, 918, 1031, 1283, 1530, 1546
Bme18I	GGWCC	5 cut(s)	456, 597, 738, 1279, 1526
BmeRI	GACNNNNNGTC	2 cut(s)	454, 589
BmeT110I	CYCGRG	1 cut(s)	1522
BmgBI	CACGTC	1 cut(s)	700
BmgT120I	GGNCC	8 cut(s)	456, 597, 738, 910, 1003, 1004, 1279, 1526
BmiI	GGNNCC	9 cut(s)	599, 633, 765, 834, 1005, 1006, 1094, 1281, 1527
BmrFI	CCNGG	8 cut(s)	595, 645, 808, 918, 1031, 1283, 1530, 1546
BmrI	ACTGGG	1 cut(s)	478
BmsI	GCATC	1 cut(s)	48
BmuI	ACTGGG	1 cut(s)	478
BoxI	GACNNNNGTC	1 cut(s)	153
BpmI	CTGGAG	2 cut(s)	520, 648
Bpu10I	CCTNAGC	1 cut(s)	548
Bpu14I	TTCGAA	1 cut(s)	1451
BpuMI	CCSGG	5 cut(s)	808, 918, 1283, 1530, 1546
BsaAI	YACGTR	1 cut(s)	392
BsaHI	GRCGYC	3 cut(s)	764, 981, 1011
BsaJI	CCNNGG	9 cut(s)	528, 807, 945, 1087, 1114, 1220, 1394, 1469, 1529
BsaWI	WCCGGW	4 cut(s)	679, 735, 1308, 1573
Bsc4I	CCNNNNNNNGG	7 cut(s)	594, 997, 1021, 1036, 1241, 1288, 1573
Bse118I	RCCGGY	2 cut(s)	62, 296
Bse1I	ACTGG	3 cut(s)	442, 484, 1126
Bse3DI	GCAATG	2 cut(s)	1162, 1212
BseAI	TCCGGA	1 cut(s)	1308
BseBI	CCWGG	3 cut(s)	595, 645, 1031
BseDI	CCNNGG	9 cut(s)	528, 807, 945, 1087, 1114, 1220, 1394, 1469, 1529
BseGI	GGATG	3 cut(s)	78, 879, 1206
BseLI	CCNNNNNNNGG	7 cut(s)	594, 997, 1021, 1036, 1241, 1288, 1573
BseMI	GCAATG	2 cut(s)	1162, 1212
BseNI	ACTGG	3 cut(s)	442, 484, 1126
BseRI	GAGGAG	3 cut(s)	11, 229, 1493
BseSI	GKGCMC	2 cut(s)	1007, 1095
BseX3I	CGGCCG	1 cut(s)	64
BseXI	GCAGC	3 cut(s)	312, 1171, 1187
BseYI	CCCAGC	1 cut(s)	1014
BsgI	GTGCAG	1 cut(s)	1186
Bsh1236I	CGCG	3 cut(s)	12, 618, 761
Bsh1285I	CGRYCG	1 cut(s)	67
BshNI	GGYRCC	2 cut(s)	763, 1092
BsiEI	CGRYCG	1 cut(s)	67
BsiHKAI	GWGCWC	1 cut(s)	428
BsiHKCI	CYCGRG	1 cut(s)	1522
BslFI	GGGAC	2 cut(s)	643, 1539
BslI	CCNNNNNNNGG	7 cut(s)	594, 997, 1021, 1036, 1241, 1288, 1573
BsmAI	GTCTC	2 cut(s)	241, 499
BsmBI	CGTCTC	1 cut(s)	499
BsmFI	GGGAC	2 cut(s)	643, 1539
BsmI	GAATGC	2 cut(s)	461, 1258
BsoBI	CYCGRG	1 cut(s)	1522
Bsp119I	TTCGAA	1 cut(s)	1451
Bsp120I	GGGCCC	1 cut(s)	1003
Bsp1286I	GDGCHC	3 cut(s)	428, 1007, 1095
Bsp13I	TCCGGA	1 cut(s)	1308
Bsp1407I	TGTACA	1 cut(s)	1350
Bsp143I	GATC	6 cut(s)	114, 555, 647, 896, 1046, 1057
Bsp19I	CCATGG	1 cut(s)	1114
BspEI	TCCGGA	1 cut(s)	1308
BspFNI	CGCG	3 cut(s)	12, 618, 761
BspLI	GGNNCC	9 cut(s)	599, 633, 765, 834, 1005, 1006, 1094, 1281, 1527
BspPI	GGATC	3 cut(s)	109, 655, 904
BspT104I	TTCGAA	1 cut(s)	1451
BspT107I	GGYRCC	2 cut(s)	763, 1092
BsrBI	CCGCTC	1 cut(s)	75
BsrDI	GCAATG	2 cut(s)	1162, 1212
BsrFI	RCCGGY	2 cut(s)	62, 296
BsrGI	TGTACA	1 cut(s)	1350
BsrI	ACTGG	3 cut(s)	442, 484, 1126
BssAI	RCCGGY	2 cut(s)	62, 296
BssECI	CCNNGG	9 cut(s)	528, 807, 945, 1087, 1114, 1220, 1394, 1469, 1529
BssMI	GATC	6 cut(s)	114, 555, 647, 896, 1046, 1057
BssNI	GRCGYC	3 cut(s)	764, 981, 1011
BssSI	CACGAG	1 cut(s)	411
BssT1I	CCWWGG	3 cut(s)	1087, 1114, 1469
Bst2BI	CACGAG	1 cut(s)	411
Bst2UI	CCWGG	3 cut(s)	595, 645, 1031
Bst4CI	ACNGT	9 cut(s)	362, 529, 694, 706, 886, 946, 1055, 1417, 1430
Bst6I	CTCTTC	3 cut(s)	813, 839, 1329
BstACI	GRCGYC	3 cut(s)	764, 981, 1011
BstAUI	TGTACA	1 cut(s)	1350
BstBAI	YACGTR	1 cut(s)	392
BstBI	TTCGAA	1 cut(s)	1451
BstC8I	GCNNGC	6 cut(s)	64, 127, 298, 914, 1003, 1290
BstDEI	CTNAG	1 cut(s)	548
BstDSI	CCRYGG	4 cut(s)	528, 945, 1114, 1394
BstF5I	GGATG	3 cut(s)	78, 879, 1206
BstFNI	CGCG	3 cut(s)	12, 618, 761
BstH2I	RGCGCY	1 cut(s)	767
BstHHI	GCGC	4 cut(s)	618, 766, 1219, 1288
BstKTI	GATC	6 cut(s)	117, 558, 650, 899, 1049, 1060
BstMAI	GTCTC	2 cut(s)	241, 499
BstMBI	GATC	6 cut(s)	114, 555, 647, 896, 1046, 1057
BstMCI	CGRYCG	1 cut(s)	67
BstMWI	GCNNNNNNNGC	7 cut(s)	72, 101, 131, 309, 416, 758, 1262
BstNI	CCWGG	3 cut(s)	595, 645, 1031
BstNSI	RCATGY	2 cut(s)	156, 1586
BstPAI	GACNNNNGTC	1 cut(s)	153
BstSCI	CCNGG	8 cut(s)	593, 643, 806, 916, 1029, 1281, 1528, 1544
BstSFI	CTRYAG	1 cut(s)	1429
BstSLI	GKGCMC	2 cut(s)	1007, 1095
BstUI	CGCG	3 cut(s)	12, 618, 761
BstV1I	GCAGC	3 cut(s)	312, 1171, 1187
BstX2I	RGATCY	1 cut(s)	896
BstXI	CCANNNNNNTGG	1 cut(s)	268
BstYI	RGATCY	1 cut(s)	896
BstZI	CGGCCG	1 cut(s)	64
BtgI	CCRYGG	4 cut(s)	528, 945, 1114, 1394
BtrI	CACGTC	1 cut(s)	700
BtsCI	GGATG	3 cut(s)	78, 879, 1206
BtsI	GCAGTG	1 cut(s)	1263
BtsIMutI	CAGTG	2 cut(s)	1060, 1263
Cac8I	GCNNGC	6 cut(s)	64, 127, 298, 914, 1003, 1290
CfoI	GCGC	4 cut(s)	618, 766, 1219, 1288
Cfr10I	RCCGGY	2 cut(s)	62, 296
Cfr13I	GGNCC	8 cut(s)	456, 597, 738, 910, 1003, 1004, 1279, 1526
CseI	GACGC	3 cut(s)	970, 1019, 1504
Csp6I	GTAC	6 cut(s)	358, 399, 445, 469, 1339, 1351
CviQI	GTAC	6 cut(s)	358, 399, 445, 469, 1339, 1351
DdeI	CTNAG	1 cut(s)	548
DinI	GGCGCC	1 cut(s)	765
DpnI	GATC	6 cut(s)	116, 557, 649, 898, 1048, 1059
DpnII	GATC	6 cut(s)	114, 555, 647, 896, 1046, 1057
DriI	GACNNNNNGTC	2 cut(s)	454, 589
EaeI	YGGCCR	4 cut(s)	64, 394, 972, 1542
EagI	CGGCCG	1 cut(s)	64
Eam1104I	CTCTTC	3 cut(s)	813, 839, 1329
Eam1105I	GACNNNNNGTC	2 cut(s)	454, 589
EarI	CTCTTC	3 cut(s)	813, 839, 1329
EciI	GGCGGA	3 cut(s)	43, 49, 418
Ecl136II	GAGCTC	1 cut(s)	426
EclXI	CGGCCG	1 cut(s)	64
Eco130I	CCWWGG	3 cut(s)	1087, 1114, 1469
Eco147I	AGGCCT	1 cut(s)	161
Eco24I	GRGCYC	2 cut(s)	428, 1007
Eco47I	GGWCC	5 cut(s)	456, 597, 738, 1279, 1526
Eco52I	CGGCCG	1 cut(s)	64
Eco53kI	GAGCTC	1 cut(s)	426
Eco72I	CACGTG	1 cut(s)	392
Eco88I	CYCGRG	1 cut(s)	1522
EcoICRI	GAGCTC	1 cut(s)	426
EcoO109I	RGGNCCY	1 cut(s)	1004
EcoRII	CCWGG	3 cut(s)	593, 643, 1029
EcoT14I	CCWWGG	3 cut(s)	1087, 1114, 1469
EcoT38I	GRGCYC	2 cut(s)	428, 1007
EgeI	GGCGCC	1 cut(s)	765
EheI	GGCGCC	1 cut(s)	765
ErhI	CCWWGG	3 cut(s)	1087, 1114, 1469
Esp3I	CGTCTC	1 cut(s)	499
FaqI	GGGAC	2 cut(s)	643, 1539
FauI	CCCGC	4 cut(s)	17, 146, 609, 994
FbaI	TGATCA	1 cut(s)	1057
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	9 cut(s)	67, 102, 294, 301, 321, 417, 762, 1185, 1201
FokI	GGATG	3 cut(s)	65, 886, 1193
FriOI	GRGCYC	2 cut(s)	428, 1007
Fsp4HI	GCNGC	9 cut(s)	67, 102, 294, 301, 321, 417, 762, 1185, 1201
FspBI	CTAG	4 cut(s)	224, 839, 1088, 1642
GlaI	GCGC	4 cut(s)	617, 765, 1218, 1287
GluI	GCNGC	9 cut(s)	67, 102, 294, 301, 321, 417, 762, 1185, 1201
GsaI	CCCAGC	1 cut(s)	1018
GsuI	CTGGAG	2 cut(s)	520, 648
HaeII	RGCGCY	1 cut(s)	767
HgaI	GACGC	3 cut(s)	970, 1019, 1504
HhaI	GCGC	4 cut(s)	618, 766, 1219, 1288
Hin1I	GRCGYC	3 cut(s)	764, 981, 1011
Hin6I	GCGC	4 cut(s)	616, 764, 1217, 1286
HinP1I	GCGC	4 cut(s)	616, 764, 1217, 1286
HincII	GTYRAC	1 cut(s)	1231
HindII	GTYRAC	1 cut(s)	1231
HinfI	GANTC	3 cut(s)	533, 793, 1570
HpaI	GTTAAC	1 cut(s)	1231
HphI	GGTGA	4 cut(s)	364, 766, 1019, 1564
Hpy166II	GTNNAC	8 cut(s)	6, 532, 697, 757, 955, 1027, 1231, 1372
Hpy188III	TCNNGA	5 cut(s)	665, 790, 1309, 1423, 1524
Hpy8I	GTNNAC	8 cut(s)	6, 532, 697, 757, 955, 1027, 1231, 1372
Hpy99I	CGWCG	5 cut(s)	248, 623, 965, 1013, 1498
HpyAV	CCTTC	3 cut(s)	197, 1393, 1451
HpyCH4III	ACNGT	9 cut(s)	362, 529, 694, 706, 886, 946, 1055, 1417, 1430
HpyCH4IV	ACGT	2 cut(s)	391, 699
HpyCH4V	TGCA	8 cut(s)	39, 129, 711, 1143, 1203, 1256, 1592, 1603
HpyF10VI	GCNNNNNNNGC	7 cut(s)	72, 101, 131, 309, 416, 758, 1262
HpyF3I	CTNAG	1 cut(s)	548
HpySE526I	ACGT	2 cut(s)	391, 699
Hsp92I	GRCGYC	3 cut(s)	764, 981, 1011
HspAI	GCGC	4 cut(s)	616, 764, 1217, 1286
KasI	GGCGCC	1 cut(s)	763
Kpn2I	TCCGGA	1 cut(s)	1308
KroI	GCCGGC	2 cut(s)	62, 296
KroNI	GCCGGC	2 cut(s)	64, 298
Ksp22I	TGATCA	1 cut(s)	1057
KspAI	GTTAAC	1 cut(s)	1231
Kzo9I	GATC	6 cut(s)	114, 555, 647, 896, 1046, 1057
LmnI	GCTCC	2 cut(s)	80, 431
Lsp1109I	GCAGC	3 cut(s)	312, 1171, 1187
LweI	GCATC	1 cut(s)	48
MaeI	CTAG	4 cut(s)	224, 839, 1088, 1642
MaeII	ACGT	2 cut(s)	391, 699
MaeIII	GTNAC	5 cut(s)	637, 700, 731, 982, 1258
MalI	GATC	6 cut(s)	116, 557, 649, 898, 1048, 1059
MbiI	CCGCTC	1 cut(s)	75
MboI	GATC	6 cut(s)	114, 555, 647, 896, 1046, 1057
MboII	GAAGA	5 cut(s)	550, 830, 856, 1261, 1346
MflI	RGATCY	1 cut(s)	896
MhlI	GDGCHC	3 cut(s)	428, 1007, 1095
MlsI	TGGCCA	1 cut(s)	974
MluCI	AATT	7 cut(s)	349, 785, 888, 921, 1075, 1146, 1606
MluNI	TGGCCA	1 cut(s)	974
Mly113I	GGCGCC	1 cut(s)	764
MlyI	GAGTC	1 cut(s)	527
MmeI	TCCRAC	4 cut(s)	142, 267, 300, 801
Mox20I	TGGCCA	1 cut(s)	974
MroI	TCCGGA	1 cut(s)	1308
MroNI	GCCGGC	2 cut(s)	62, 296
MroXI	GAANNNNTTC	1 cut(s)	1316
MscI	TGGCCA	1 cut(s)	974
MseI	TTAA	4 cut(s)	513, 726, 828, 1230
MslI	CAYNNNNRTG	1 cut(s)	1587
Msp20I	TGGCCA	1 cut(s)	974
MspR9I	CCNGG	8 cut(s)	595, 645, 808, 918, 1031, 1283, 1530, 1546
Mva1269I	GAATGC	2 cut(s)	461, 1258
MvaI	CCWGG	3 cut(s)	595, 645, 1031
MvnI	CGCG	3 cut(s)	12, 618, 761
MwoI	GCNNNNNNNGC	7 cut(s)	72, 101, 131, 309, 416, 758, 1262
NaeI	GCCGGC	2 cut(s)	64, 298
NarI	GGCGCC	1 cut(s)	764
NciI	CCSGG	5 cut(s)	808, 918, 1283, 1530, 1546
NcoI	CCATGG	1 cut(s)	1114
NdeII	GATC	6 cut(s)	114, 555, 647, 896, 1046, 1057
NgoMIV	GCCGGC	2 cut(s)	62, 296
NlaIV	GGNNCC	9 cut(s)	599, 633, 765, 834, 1005, 1006, 1094, 1281, 1527
NmeAIII	GCCGAG	2 cut(s)	1160, 1245
NmuCI	GTSAC	4 cut(s)	637, 700, 982, 1258
NspI	RCATGY	2 cut(s)	156, 1586
NspV	TTCGAA	1 cut(s)	1451
PceI	AGGCCT	1 cut(s)	161
PciI	ACATGT	1 cut(s)	152
PctI	GAATGC	2 cut(s)	461, 1258
PdiI	GCCGGC	2 cut(s)	64, 298
PdmI	GAANNNNTTC	1 cut(s)	1316
PfeI	GAWTC	2 cut(s)	793, 1570
PflMI	CCANNNNNTGG	2 cut(s)	594, 1036
PfoI	TCCNGGA	1 cut(s)	593
PkrI	GCNGC	9 cut(s)	68, 103, 295, 302, 322, 418, 763, 1186, 1202
PleI	GAGTC	1 cut(s)	527
PluTI	GGCGCC	1 cut(s)	767
PmaCI	CACGTG	1 cut(s)	392
PmlI	CACGTG	1 cut(s)	392
PpsI	GAGTC	1 cut(s)	527
Ppu21I	YACGTR	1 cut(s)	392
PscI	ACATGT	1 cut(s)	152
PshAI	GACNNNNGTC	1 cut(s)	153
Psp124BI	GAGCTC	1 cut(s)	428
Psp6I	CCWGG	3 cut(s)	593, 643, 1029
PspCI	CACGTG	1 cut(s)	392
PspFI	CCCAGC	1 cut(s)	1014
PspGI	CCWGG	3 cut(s)	593, 643, 1029
PspN4I	GGNNCC	9 cut(s)	599, 633, 765, 834, 1005, 1006, 1094, 1281, 1527
PspOMI	GGGCCC	1 cut(s)	1003
PspPI	GGNCC	8 cut(s)	456, 597, 738, 910, 1003, 1004, 1279, 1526
PsrI	GAACNNNNNNTAC	2 cut(s)	660, 692
PsuI	RGATCY	1 cut(s)	896
RsaI	GTAC	6 cut(s)	359, 400, 446, 470, 1340, 1352
RsaNI	GTAC	6 cut(s)	358, 399, 445, 469, 1339, 1351
RseI	CAYNNNNRTG	1 cut(s)	1587
SacI	GAGCTC	1 cut(s)	428
SaqAI	TTAA	4 cut(s)	513, 726, 828, 1230
SatI	GCNGC	9 cut(s)	67, 102, 294, 301, 321, 417, 762, 1185, 1201
Sau3AI	GATC	6 cut(s)	114, 555, 647, 896, 1046, 1057
Sau96I	GGNCC	8 cut(s)	456, 597, 738, 910, 1003, 1004, 1279, 1526
SchI	GAGTC	1 cut(s)	527
ScrFI	CCNGG	8 cut(s)	595, 645, 808, 918, 1031, 1283, 1530, 1546
SduI	GDGCHC	3 cut(s)	428, 1007, 1095
SetI	ASST	9 cut(s)	189, 394, 428, 702, 724, 834, 932, 1026, 1444
SfaNI	GCATC	1 cut(s)	48
SfcI	CTRYAG	1 cut(s)	1429
SfoI	GGCGCC	1 cut(s)	765
SfuI	TTCGAA	1 cut(s)	1451
SinI	GGWCC	5 cut(s)	456, 597, 738, 1279, 1526
SmiMI	CAYNNNNRTG	1 cut(s)	1587
Sse9I	AATT	7 cut(s)	349, 785, 888, 921, 1075, 1146, 1606
SseBI	AGGCCT	1 cut(s)	161
SspDI	GGCGCC	1 cut(s)	763
SspMI	CTAG	4 cut(s)	224, 839, 1088, 1642
SstI	GAGCTC	1 cut(s)	428
StuI	AGGCCT	1 cut(s)	161
StyD4I	CCNGG	8 cut(s)	593, 643, 806, 916, 1029, 1281, 1528, 1544
StyI	CCWWGG	3 cut(s)	1087, 1114, 1469
TaaI	ACNGT	9 cut(s)	362, 529, 694, 706, 886, 946, 1055, 1417, 1430
TaiI	ACGT	2 cut(s)	394, 702
TaqI	TCGA	6 cut(s)	336, 674, 926, 1194, 1409, 1451
TaqII	GACCGA	1 cut(s)	626
TasI	AATT	7 cut(s)	349, 785, 888, 921, 1075, 1146, 1606
TatI	WGTACW	2 cut(s)	1338, 1350
TauI	GCSGC	6 cut(s)	69, 104, 296, 323, 419, 764
TfiI	GAWTC	2 cut(s)	793, 1570
Tru1I	TTAA	4 cut(s)	513, 726, 828, 1230
Tru9I	TTAA	4 cut(s)	513, 726, 828, 1230
TscAI	CASTG	2 cut(s)	1060, 1263
TseFI	GTSAC	4 cut(s)	637, 700, 982, 1258
TseI	GCWGC	3 cut(s)	300, 1184, 1200
Tsp45I	GTSAC	4 cut(s)	637, 700, 982, 1258
TspDTI	ATGAA	5 cut(s)	499, 831, 958, 1309, 1358
TspGWI	ACGGA	3 cut(s)	1292, 1341, 1346
TspRI	CASTG	2 cut(s)	1060, 1263
Van91I	CCANNNNNTGG	2 cut(s)	594, 1036
VpaK11BI	GGWCC	5 cut(s)	456, 597, 738, 1279, 1526
XapI	RAATTY	5 cut(s)	349, 785, 921, 1146, 1606
XceI	RCATGY	2 cut(s)	156, 1586
XmaJI	CCTAGG	1 cut(s)	1087
XmiI	GTMKAC	1 cut(s)	5
XmnI	GAANNNNTTC	1 cut(s)	1316
XspI	CTAG	4 cut(s)	224, 839, 1088, 1642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.