Rh3AG306800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000649
Physical Location & Seq
Reverse (-)
38171083 .. 38171873
791 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG306800.1

Sequence Viewer

Length: 201 bp
ATGTTCATCGGGACACTGCCTGGCATGGTCATTGGGACGCTGTCCGGCATGGTTCATCGGGACGCTGCCCGGCATGTTCATCGGAGACGCTGCTCCGGCATGTTGTCTTTGACATCATTGACACCCGGAGGTGCCGTTGTGGGGAGGGTCTGCAATAGAAAAGAAATGGTGCTGGAGAGCTATGGAATGAGAGGCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

66

Amino Acids

7.16

Weight (kDa)

11.21

Isoelectric Point (pI)

28.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000649)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33840
fragaria_vesca FvH4_2g00190 FvH4_4g18133 FvH4_4g36450 FvH4_5g02490 FvH4_5g35150 FvH4_6g35840
malus_domestica MD04G1034100.v1.1 MD06G1084100.v1.1
prunus_persica Prupe.2G139100_v2.0.a1 Prupe.5G096900_v2.0.a1 Prupe.5G096900_v2.0.a1 Prupe.5G100500_v2.0.a1 Prupe.5G100500_v2.0.a1 Prupe.5G100500_v2.0.a1
pyrus_communis pycom04g02850
rosa_chinensis RchiOBHm_Chr1g0324941 RchiOBHm_Chr1g0340751 RchiOBHm_Chr2g0133721 RchiOBHm_Chr2g0153921 RchiOBHm_Chr4g0396761 RchiOBHm_Chr4g0414291 RchiOBHm_Chr4g0429871 RchiOBHm_Chr4g0446211 RchiOBHm_Chr5g0057181 RchiOBHm_Chr5g0057391 RchiOBHm_Chr5g0077561 RchiOBHm_Chr6g0307121 RchiOBHm_Chr7g0197611
rosa_laevigata RLG00000003922 RLG00000005681 RLG00000017313 RLG00000029149 RLG00000035152
rosa_multiflora Rmu_co8043936.1_g000001 Rmu_sc0001164.1_g000009 Rmu_sc0001334.1_g000004 Rmu_sc0004952.1_g000011 Rmu_sc0013154.1_g000007 Rmu_sc0017650.1_g000006 Rmu_sc0018062.1_g000003
rosa_roxburghii Rroxscaffold_1G00023030 Rroxscaffold_2G00094650 Rroxscaffold_3G00223000 Rroxscaffold_3G00232150 Rroxscaffold_3G00248030 Rroxscaffold_3G00248040 Rroxscaffold_3G00258320
rosa_rugosa Rorug04G0184600 Rorug04G0368500 Rorug05G0306000 Rorug05G0307100 Rorug07G0041900
rosa_samantha Rh2CG164400 Rh2DG389300 Rh3AG306800 Rh4AG430600 Rh4BG440000 Rh4CG457300 Rh4DG438500 Rh5AG375500 Rh5BG386300 Rh5CG409700 Rh5DG400300 Rh6CG481100 Rh7AG166300 Rh7AG360600 Rh7BG168400 Rh7CG174700 Rh7DG168000 Rh7DG387600
rosa_wichuraiana Rw2G022790 Rw4G036780 Rw5G035320 Rw5G035460 Rw7G014480 Rw7G038030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 131
AfiI CCNNNNNNNGG 1 cut(s) 141
AjnI CCWGG 1 cut(s) 19
AluBI AGCT 1 cut(s) 180
AluI AGCT 1 cut(s) 180
Alw26I GTCTC 1 cut(s) 79
ApeKI GCWGC 2 cut(s) 65, 90
AsuC2I CCSGG 2 cut(s) 70, 126
BanI GGYRCC 1 cut(s) 131
BbvI GCAGC 2 cut(s) 52, 77
BceAI ACGGC 1 cut(s) 119
BcgI CGANNNNNNTGC 2 cut(s) 62, 96
BciT130I CCWGG 1 cut(s) 21
BcnI CCSGG 2 cut(s) 70, 126
BcoDI GTCTC 1 cut(s) 79
BisI GCNGC 2 cut(s) 66, 91
BlsI GCNGC 2 cut(s) 67, 92
Bme1390I CCNGG 3 cut(s) 21, 70, 126
BmiI GGNNCC 1 cut(s) 133
BmrFI CCNGG 3 cut(s) 21, 70, 126
BpmI CTGGAG 1 cut(s) 194
BpuMI CCSGG 2 cut(s) 70, 126
BsaXI ACNNNNNCTCC 2 cut(s) 120, 150
Bsc4I CCNNNNNNNGG 1 cut(s) 141
BseBI CCWGG 1 cut(s) 21
BseLI CCNNNNNNNGG 1 cut(s) 141
BseXI GCAGC 2 cut(s) 52, 77
BshNI GGYRCC 1 cut(s) 131
BsiSI CCGG 4 cut(s) 45, 70, 96, 126
BslFI GGGAC 3 cut(s) 25, 49, 74
BslI CCNNNNNNNGG 1 cut(s) 141
BsmAI GTCTC 1 cut(s) 79
BsmBI CGTCTC 1 cut(s) 79
BsmFI GGGAC 3 cut(s) 25, 49, 74
BspLI GGNNCC 1 cut(s) 133
BspT107I GGYRCC 1 cut(s) 131
Bst2UI CCWGG 1 cut(s) 21
BstMAI GTCTC 1 cut(s) 79
BstMWI GCNNNNNNNGC 1 cut(s) 96
BstNI CCWGG 1 cut(s) 21
BstNSI RCATGY 2 cut(s) 77, 103
BstSCI CCNGG 3 cut(s) 19, 68, 124
BstV1I GCAGC 2 cut(s) 52, 77
BtsI GCAGTG 1 cut(s) 14
BtsIMutI CAGTG 1 cut(s) 14
CseI GACGC 3 cut(s) 46, 71, 96
CviAII CATG 4 cut(s) 25, 49, 74, 100
CviJI RGCY 2 cut(s) 180, 195
CviKI_1 RGCY 2 cut(s) 180, 195
EcoRII CCWGG 1 cut(s) 19
Esp3I CGTCTC 1 cut(s) 79
FaeI CATG 4 cut(s) 28, 52, 77, 103
FaiI YATR 5 cut(s) 26, 50, 75, 101, 183
FaqI GGGAC 3 cut(s) 25, 49, 74
FatI CATG 4 cut(s) 24, 48, 73, 99
Fnu4HI GCNGC 2 cut(s) 66, 91
Fsp4HI GCNGC 2 cut(s) 66, 91
GluI GCNGC 2 cut(s) 66, 91
GsuI CTGGAG 1 cut(s) 194
HapII CCGG 4 cut(s) 45, 70, 96, 126
HgaI GACGC 3 cut(s) 46, 71, 96
Hin1II CATG 4 cut(s) 28, 52, 77, 103
HpaII CCGG 4 cut(s) 45, 70, 96, 126
Hpy188I TCNGA 1 cut(s) 84
Hpy188III TCNNGA 2 cut(s) 10, 59
HpyCH4V TGCA 1 cut(s) 153
HpyF10VI GCNNNNNNNGC 1 cut(s) 96
Hsp92II CATG 4 cut(s) 28, 52, 77, 103
LmnI GCTCC 1 cut(s) 98
LpnPI CCDG 7 cut(s) 6, 33, 58, 83, 109, 139, 158
Lsp1109I GCAGC 2 cut(s) 52, 77
MnlI CCTC 3 cut(s) 122, 138, 185
MseI TTAA 1 cut(s) 199
MspI CCGG 4 cut(s) 45, 70, 96, 126
MspR9I CCNGG 3 cut(s) 21, 70, 126
MvaI CCWGG 1 cut(s) 21
MwoI GCNNNNNNNGC 1 cut(s) 96
NciI CCSGG 2 cut(s) 70, 126
NlaIII CATG 4 cut(s) 28, 52, 77, 103
NlaIV GGNNCC 1 cut(s) 133
NspI RCATGY 2 cut(s) 77, 103
PflFI GACNNNGTC 1 cut(s) 40
PkrI GCNGC 2 cut(s) 67, 92
Psp6I CCWGG 1 cut(s) 19
PspGI CCWGG 1 cut(s) 19
PspN4I GGNNCC 1 cut(s) 133
PsyI GACNNNGTC 1 cut(s) 40
SaqAI TTAA 1 cut(s) 199
SatI GCNGC 2 cut(s) 66, 91
ScrFI CCNGG 3 cut(s) 21, 70, 126
SetI ASST 2 cut(s) 133, 182
StyD4I CCNGG 3 cut(s) 19, 68, 124
Tru1I TTAA 1 cut(s) 199
Tru9I TTAA 1 cut(s) 199
TscAI CASTG 1 cut(s) 21
TseI GCWGC 2 cut(s) 65, 90
TspDTI ATGAA 2 cut(s) 44, 68
TspRI CASTG 1 cut(s) 21
Tth111I GACNNNGTC 1 cut(s) 40
XceI RCATGY 2 cut(s) 77, 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.