RchiOBHm_Chr1g0340751

Belongs to the class-I aminoacyl-tRNA synthetase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
32300128 .. 32300790
663 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56751

Sequence Viewer

Length: 261 bp
ATGGCTTGGGCCGAAGAGGGAGTTTTGAAGGCAATTAATGTGAACAAGATGTTTGCTGGAGGCTGCAAAATCAATGCTAGGTCACATGAGTACTGGCCTTGTGTAATGGATATTGCAAGGAAAAACAAGCTTTCGAGGATCATTAGGTGTAGTCAAATTATAGGTCGAATGGATCAAGAAGAGTTAGCTGTAGTCCAAATCCTCTACCCGTGTATGCAATGCAGATGTTATTGGTTTTGGGTGAGAAGAAGAAGAAGGTAG

Protein Analysis

86

Amino Acids

10.3

Weight (kDa)

9.74

Isoelectric Point (pI)

63.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000649)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33840
fragaria_vesca FvH4_2g00190 FvH4_4g18133 FvH4_4g36450 FvH4_5g02490 FvH4_5g35150 FvH4_6g35840
malus_domestica MD04G1034100.v1.1 MD06G1084100.v1.1
prunus_persica Prupe.2G139100_v2.0.a1 Prupe.5G096900_v2.0.a1 Prupe.5G096900_v2.0.a1 Prupe.5G100500_v2.0.a1 Prupe.5G100500_v2.0.a1 Prupe.5G100500_v2.0.a1
pyrus_communis pycom04g02850
rosa_chinensis RchiOBHm_Chr1g0324941 RchiOBHm_Chr1g0340751 RchiOBHm_Chr2g0133721 RchiOBHm_Chr2g0153921 RchiOBHm_Chr4g0396761 RchiOBHm_Chr4g0414291 RchiOBHm_Chr4g0429871 RchiOBHm_Chr4g0446211 RchiOBHm_Chr5g0057181 RchiOBHm_Chr5g0057391 RchiOBHm_Chr5g0077561 RchiOBHm_Chr6g0307121 RchiOBHm_Chr7g0197611
rosa_laevigata RLG00000003922 RLG00000005681 RLG00000017313 RLG00000029149 RLG00000035152
rosa_multiflora Rmu_co8043936.1_g000001 Rmu_sc0001164.1_g000009 Rmu_sc0001334.1_g000004 Rmu_sc0004952.1_g000011 Rmu_sc0013154.1_g000007 Rmu_sc0017650.1_g000006 Rmu_sc0018062.1_g000003
rosa_roxburghii Rroxscaffold_1G00023030 Rroxscaffold_2G00094650 Rroxscaffold_3G00223000 Rroxscaffold_3G00232150 Rroxscaffold_3G00248030 Rroxscaffold_3G00248040 Rroxscaffold_3G00258320
rosa_rugosa Rorug04G0184600 Rorug04G0368500 Rorug05G0306000 Rorug05G0307100 Rorug07G0041900
rosa_samantha Rh2CG164400 Rh2DG389300 Rh3AG306800 Rh4AG430600 Rh4BG440000 Rh4CG457300 Rh4DG438500 Rh5AG375500 Rh5BG386300 Rh5CG409700 Rh5DG400300 Rh6CG481100 Rh7AG166300 Rh7AG360600 Rh7BG168400 Rh7CG174700 Rh7DG168000 Rh7DG387600
rosa_wichuraiana Rw2G022790 Rw4G036780 Rw5G035320 Rw5G035460 Rw7G014480 Rw7G038030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 146, 180
AfaI GTAC 1 cut(s) 92
AgsI TTSAA 1 cut(s) 28
AluBI AGCT 2 cut(s) 130, 188
AluI AGCT 2 cut(s) 130, 188
AlwI GGATC 2 cut(s) 146, 180
AoxI GGCC 2 cut(s) 9, 95
ApeKI GCWGC 1 cut(s) 63
ArsI GACNNNNNNTTYG 2 cut(s) 148, 180
AseI ATTAAT 1 cut(s) 36
AspS9I GGNCC 1 cut(s) 9
AsuHPI GGTGA 1 cut(s) 253
BbvI GCAGC 1 cut(s) 50
BfaI CTAG 1 cut(s) 78
BfmI CTRYAG 1 cut(s) 189
BisI GCNGC 1 cut(s) 64
BlsI GCNGC 1 cut(s) 65
BmcAI AGTACT 1 cut(s) 92
BmgT120I GGNCC 1 cut(s) 9
BpmI CTGGAG 1 cut(s) 78
Bse1I ACTGG 1 cut(s) 98
Bse3DI GCAATG 1 cut(s) 224
BseMI GCAATG 1 cut(s) 224
BseNI ACTGG 1 cut(s) 98
BseXI GCAGC 1 cut(s) 50
BshFI GGCC 2 cut(s) 11, 97
BsnI GGCC 2 cut(s) 11, 97
Bsp143I GATC 2 cut(s) 138, 172
BspANI GGCC 2 cut(s) 11, 97
BspPI GGATC 2 cut(s) 146, 180
BsrDI GCAATG 1 cut(s) 224
BsrI ACTGG 1 cut(s) 98
BssMI GATC 2 cut(s) 138, 172
Bst6I CTCTTC 2 cut(s) 9, 174
BstKTI GATC 2 cut(s) 141, 175
BstMBI GATC 2 cut(s) 138, 172
BstSFI CTRYAG 1 cut(s) 189
BstV1I GCAGC 1 cut(s) 50
BsuRI GGCC 2 cut(s) 11, 97
Cfr13I GGNCC 1 cut(s) 9
Csp6I GTAC 1 cut(s) 91
CviAII CATG 1 cut(s) 86
CviJI RGCY 6 cut(s) 5, 11, 63, 97, 130, 188
CviKI_1 RGCY 6 cut(s) 5, 11, 63, 97, 130, 188
CviQI GTAC 1 cut(s) 91
DpnI GATC 2 cut(s) 140, 174
DpnII GATC 2 cut(s) 138, 172
Eam1104I CTCTTC 2 cut(s) 9, 174
EarI CTCTTC 2 cut(s) 9, 174
FaeI CATG 1 cut(s) 89
FaiI YATR 3 cut(s) 87, 161, 215
FatI CATG 1 cut(s) 85
Fnu4HI GCNGC 1 cut(s) 64
Fsp4HI GCNGC 1 cut(s) 64
FspBI CTAG 1 cut(s) 78
GluI GCNGC 1 cut(s) 64
GsuI CTGGAG 1 cut(s) 78
HaeIII GGCC 2 cut(s) 11, 97
Hin1II CATG 1 cut(s) 89
HindIII AAGCTT 1 cut(s) 128
HphI GGTGA 1 cut(s) 253
Hpy166II GTNNAC 1 cut(s) 43
Hpy188III TCNNGA 1 cut(s) 176
Hpy8I GTNNAC 1 cut(s) 43
HpyAV CCTTC 2 cut(s) 22, 249
HpyCH4V TGCA 4 cut(s) 66, 116, 217, 222
Hsp92II CATG 1 cut(s) 89
Kzo9I GATC 2 cut(s) 138, 172
LpnPI CCDG 2 cut(s) 42, 79
Lsp1109I GCAGC 1 cut(s) 50
MaeI CTAG 1 cut(s) 78
MaeIII GTNAC 1 cut(s) 81
MalI GATC 2 cut(s) 140, 174
MboI GATC 2 cut(s) 138, 172
MboII GAAGA 4 cut(s) 26, 191, 258, 261
MluCI AATT 2 cut(s) 33, 156
MnlI CCTC 4 cut(s) 10, 53, 129, 212
MseI TTAA 1 cut(s) 36
NdeII GATC 2 cut(s) 138, 172
NlaIII CATG 1 cut(s) 89
NmuCI GTSAC 1 cut(s) 81
PkrI GCNGC 1 cut(s) 65
PshBI ATTAAT 1 cut(s) 36
PspPI GGNCC 1 cut(s) 9
RsaI GTAC 1 cut(s) 92
RsaNI GTAC 1 cut(s) 91
SaqAI TTAA 1 cut(s) 36
SatI GCNGC 1 cut(s) 64
Sau3AI GATC 2 cut(s) 138, 172
Sau96I GGNCC 1 cut(s) 9
ScaI AGTACT 1 cut(s) 92
SetI ASST 6 cut(s) 83, 132, 149, 166, 190, 260
SfcI CTRYAG 1 cut(s) 189
Sse9I AATT 2 cut(s) 33, 156
SspMI CTAG 1 cut(s) 78
TaqI TCGA 2 cut(s) 134, 166
TasI AATT 2 cut(s) 33, 156
TatI WGTACW 1 cut(s) 90
Tru1I TTAA 1 cut(s) 36
Tru9I TTAA 1 cut(s) 36
TseFI GTSAC 1 cut(s) 81
TseI GCWGC 1 cut(s) 63
Tsp45I GTSAC 1 cut(s) 81
VspI ATTAAT 1 cut(s) 36
XspI CTAG 1 cut(s) 78
ZrmI AGTACT 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.