RchiOBHm_Chr6g0307121

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000649
Physical Location & Seq
Reverse (-)
65614059 .. 65616029
1971 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27613

Sequence Viewer

Length: 234 bp
ATGGAAGGCCCGCTGGTGGGATTTGAAAGCGCAAGGCCTACACCAGAGGCGCCACTGCGATATGTTCATCGAGACGCTGCCCGGCATGTTCATCGGGACGCTGCCCGGCATGGTTTCATCAGGACGCTGCCCGGCATGTTGGTTTTGACATCATTGACACCCGAAGGTGCCGCTGTGAGGAGGGCCTGCAACAGAAAAGAGAAGGTGGTGGAGAGCTATGGAATGAGGTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

77

Amino Acids

8.58

Weight (kDa)

10.36

Isoelectric Point (pI)

45.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000649)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33840
fragaria_vesca FvH4_2g00190 FvH4_4g18133 FvH4_4g36450 FvH4_5g02490 FvH4_5g35150 FvH4_6g35840
malus_domestica MD04G1034100.v1.1 MD06G1084100.v1.1
prunus_persica Prupe.2G139100_v2.0.a1 Prupe.5G096900_v2.0.a1 Prupe.5G096900_v2.0.a1 Prupe.5G100500_v2.0.a1 Prupe.5G100500_v2.0.a1 Prupe.5G100500_v2.0.a1
pyrus_communis pycom04g02850
rosa_chinensis RchiOBHm_Chr1g0324941 RchiOBHm_Chr1g0340751 RchiOBHm_Chr2g0133721 RchiOBHm_Chr2g0153921 RchiOBHm_Chr4g0396761 RchiOBHm_Chr4g0414291 RchiOBHm_Chr4g0429871 RchiOBHm_Chr4g0446211 RchiOBHm_Chr5g0057181 RchiOBHm_Chr5g0057391 RchiOBHm_Chr5g0077561 RchiOBHm_Chr6g0307121 RchiOBHm_Chr7g0197611
rosa_laevigata RLG00000003922 RLG00000005681 RLG00000017313 RLG00000029149 RLG00000035152
rosa_multiflora Rmu_co8043936.1_g000001 Rmu_sc0001164.1_g000009 Rmu_sc0001334.1_g000004 Rmu_sc0004952.1_g000011 Rmu_sc0013154.1_g000007 Rmu_sc0017650.1_g000006 Rmu_sc0018062.1_g000003
rosa_roxburghii Rroxscaffold_1G00023030 Rroxscaffold_2G00094650 Rroxscaffold_3G00223000 Rroxscaffold_3G00232150 Rroxscaffold_3G00248030 Rroxscaffold_3G00248040 Rroxscaffold_3G00258320
rosa_rugosa Rorug04G0184600 Rorug04G0368500 Rorug05G0306000 Rorug05G0307100 Rorug07G0041900
rosa_samantha Rh2CG164400 Rh2DG389300 Rh3AG306800 Rh4AG430600 Rh4BG440000 Rh4CG457300 Rh4DG438500 Rh5AG375500 Rh5BG386300 Rh5CG409700 Rh5DG400300 Rh6CG481100 Rh7AG166300 Rh7AG360600 Rh7BG168400 Rh7CG174700 Rh7DG168000 Rh7DG387600
rosa_wichuraiana Rw2G022790 Rw4G036780 Rw5G035320 Rw5G035460 Rw7G014480 Rw7G038030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 49, 167
AciI CCGC 2 cut(s) 11, 171
AcyI GRCGYC 1 cut(s) 50
AfiI CCNNNNNNNGG 3 cut(s) 16, 17, 177
AgsI TTSAA 1 cut(s) 26
AluBI AGCT 1 cut(s) 216
AluI AGCT 1 cut(s) 216
Alw26I GTCTC 1 cut(s) 66
AoxI GGCC 3 cut(s) 7, 35, 183
ApeKI GCWGC 3 cut(s) 77, 101, 127
AspLEI GCGC 2 cut(s) 32, 52
AspS9I GGNCC 3 cut(s) 8, 183, 228
AsuC2I CCSGG 3 cut(s) 82, 106, 132
AvaII GGWCC 1 cut(s) 228
BanI GGYRCC 2 cut(s) 49, 167
BbvI GCAGC 3 cut(s) 64, 88, 114
BcgI CGANNNNNNTGC 2 cut(s) 74, 108
BcnI CCSGG 3 cut(s) 82, 106, 132
BcoDI GTCTC 1 cut(s) 66
BfoI RGCGCY 1 cut(s) 53
BisI GCNGC 4 cut(s) 78, 102, 128, 171
BlsI GCNGC 4 cut(s) 79, 103, 129, 172
Bme1390I CCNGG 3 cut(s) 82, 106, 132
Bme18I GGWCC 1 cut(s) 228
BmgT120I GGNCC 3 cut(s) 8, 183, 228
BmiI GGNNCC 2 cut(s) 51, 169
BmrFI CCNGG 3 cut(s) 82, 106, 132
BpuMI CCSGG 3 cut(s) 82, 106, 132
BsaHI GRCGYC 1 cut(s) 50
Bsc4I CCNNNNNNNGG 3 cut(s) 16, 17, 177
BseLI CCNNNNNNNGG 3 cut(s) 16, 17, 177
BseRI GAGGAG 1 cut(s) 193
BseXI GCAGC 3 cut(s) 64, 88, 114
BshFI GGCC 3 cut(s) 9, 37, 185
BshNI GGYRCC 2 cut(s) 49, 167
BsiSI CCGG 3 cut(s) 82, 106, 132
BslFI GGGAC 1 cut(s) 110
BslI CCNNNNNNNGG 3 cut(s) 16, 17, 177
BsmAI GTCTC 1 cut(s) 66
BsmBI CGTCTC 1 cut(s) 66
BsmFI GGGAC 1 cut(s) 110
BsnI GGCC 3 cut(s) 9, 37, 185
BspACI CCGC 2 cut(s) 11, 171
BspANI GGCC 3 cut(s) 9, 37, 185
BspLI GGNNCC 2 cut(s) 51, 169
BspT107I GGYRCC 2 cut(s) 49, 167
BssNI GRCGYC 1 cut(s) 50
BstACI GRCGYC 1 cut(s) 50
BstC8I GCNNGC 2 cut(s) 11, 187
BstH2I RGCGCY 1 cut(s) 53
BstHHI GCGC 2 cut(s) 32, 52
BstMAI GTCTC 1 cut(s) 66
BstNSI RCATGY 2 cut(s) 89, 139
BstSCI CCNGG 3 cut(s) 80, 104, 130
BstV1I GCAGC 3 cut(s) 64, 88, 114
BsuRI GGCC 3 cut(s) 9, 37, 185
BtsI GCAGTG 1 cut(s) 53
BtsIMutI CAGTG 1 cut(s) 53
Cac8I GCNNGC 2 cut(s) 11, 187
CfoI GCGC 2 cut(s) 32, 52
Cfr13I GGNCC 3 cut(s) 8, 183, 228
CseI GACGC 3 cut(s) 83, 107, 133
CviAII CATG 3 cut(s) 86, 110, 136
CviJI RGCY 4 cut(s) 9, 37, 185, 216
CviKI_1 RGCY 4 cut(s) 9, 37, 185, 216
DinI GGCGCC 1 cut(s) 51
Eco147I AGGCCT 1 cut(s) 37
Eco47I GGWCC 1 cut(s) 228
EcoO109I RGGNCCY 2 cut(s) 183, 228
EgeI GGCGCC 1 cut(s) 51
EheI GGCGCC 1 cut(s) 51
Esp3I CGTCTC 1 cut(s) 66
FaeI CATG 3 cut(s) 89, 113, 139
FaiI YATR 5 cut(s) 63, 87, 111, 137, 219
FaqI GGGAC 1 cut(s) 110
FatI CATG 3 cut(s) 85, 109, 135
FauI CCCGC 1 cut(s) 18
Fnu4HI GCNGC 4 cut(s) 78, 102, 128, 171
Fsp4HI GCNGC 4 cut(s) 78, 102, 128, 171
GlaI GCGC 2 cut(s) 31, 51
GluI GCNGC 4 cut(s) 78, 102, 128, 171
HaeII RGCGCY 1 cut(s) 53
HaeIII GGCC 3 cut(s) 9, 37, 185
HapII CCGG 3 cut(s) 82, 106, 132
HgaI GACGC 3 cut(s) 83, 107, 133
HhaI GCGC 2 cut(s) 32, 52
Hin1I GRCGYC 1 cut(s) 50
Hin1II CATG 3 cut(s) 89, 113, 139
Hin6I GCGC 2 cut(s) 30, 50
HinP1I GCGC 2 cut(s) 30, 50
HpaII CCGG 3 cut(s) 82, 106, 132
Hpy188III TCNNGA 4 cut(s) 71, 95, 121, 231
HpyAV CCTTC 2 cut(s) 158, 196
HpyCH4V TGCA 1 cut(s) 189
Hsp92I GRCGYC 1 cut(s) 50
Hsp92II CATG 3 cut(s) 89, 113, 139
HspAI GCGC 2 cut(s) 30, 50
KasI GGCGCC 1 cut(s) 49
LpnPI CCDG 6 cut(s) 57, 95, 106, 119, 145, 199
Lsp1109I GCAGC 3 cut(s) 64, 88, 114
Mly113I GGCGCC 1 cut(s) 50
MnlI CCTC 4 cut(s) 40, 171, 174, 219
MspA1I CMGCKG 2 cut(s) 13, 173
MspI CCGG 3 cut(s) 82, 106, 132
MspR9I CCNGG 3 cut(s) 82, 106, 132
NarI GGCGCC 1 cut(s) 50
NciI CCSGG 3 cut(s) 82, 106, 132
NlaIII CATG 3 cut(s) 89, 113, 139
NlaIV GGNNCC 2 cut(s) 51, 169
NspI RCATGY 2 cut(s) 89, 139
PceI AGGCCT 1 cut(s) 37
PkrI GCNGC 4 cut(s) 79, 103, 129, 172
PluTI GGCGCC 1 cut(s) 53
PpuMI RGGWCCY 1 cut(s) 228
Psp5II RGGWCCY 1 cut(s) 228
PspN4I GGNNCC 2 cut(s) 51, 169
PspPI GGNCC 3 cut(s) 8, 183, 228
PspPPI RGGWCCY 1 cut(s) 228
SatI GCNGC 4 cut(s) 78, 102, 128, 171
Sau96I GGNCC 3 cut(s) 8, 183, 228
ScrFI CCNGG 3 cut(s) 82, 106, 132
SetI ASST 4 cut(s) 169, 207, 218, 230
SfoI GGCGCC 1 cut(s) 51
SinI GGWCC 1 cut(s) 228
SseBI AGGCCT 1 cut(s) 37
SsiI CCGC 2 cut(s) 11, 171
SspDI GGCGCC 1 cut(s) 49
StuI AGGCCT 1 cut(s) 37
StyD4I CCNGG 3 cut(s) 80, 104, 130
TaqI TCGA 1 cut(s) 70
TauI GCSGC 1 cut(s) 173
TscAI CASTG 1 cut(s) 60
TseI GCWGC 3 cut(s) 77, 101, 127
TspDTI ATGAA 3 cut(s) 56, 80, 106
TspRI CASTG 1 cut(s) 60
VpaK11BI GGWCC 1 cut(s) 228
XceI RCATGY 2 cut(s) 89, 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.