Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000649

Physical Location & Seq

Genomic Coordinates Forward (+)

22073808 .. 22075094

Gene Structure 1287 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g18133.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGAGGTTCTGAAATGCTTGGAAAGGTTGATCCATTGCCGGCGACCTCATCCTCGCCTCCACCATCTCCGACGAGCTTATCCTCTCCTCCGCCTAATCCCCGCAACCGAAGCACCAGAGCAACTCGCCGCCGATGAAGTCAAATCCATGTCGATCTCCGACGAGGTCAAACCGCCATCGGTCGCCGCCGAATCTCAGCCCTCTAGCTCGTCCGCTACTCCATCCGTTCCTTTGGTTGAGAAGTATGATATCTTGAGGAGTATCGCGGAGGAGTGTGTCCAAGATGAGGAGCTCAAGAAGTTGCTGGCGAACAAGGCCGAGCCAATATGCTACGACGGATTCAAACCTTGTGTGTTGATTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004812 GO:0004831 GO:0005488 GO:0005515 GO:0005524 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006437 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016597 GO:0016874 GO:0016875 GO:0017076 GO:0019538 GO:0019752 GO:0030554 GO:0031406 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034645 GO:0034660 GO:0035639 GO:0036094 GO:0042802 GO:0042803 GO:0043038 GO:0043039 GO:0043043 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043177 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0046483 GO:0046983 GO:0071704 GO:0072545 GO:0090304 GO:0097159 GO:0097367 GO:0140098 GO:0140101 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_1b

Protein Analysis

122

Amino Acids

13.6

Weight (kDa)

6.08

Isoelectric Point (pI)

72.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33840
fragaria_vesca	FvH4_2g00190 FvH4_4g18133 FvH4_4g36450 FvH4_5g02490 FvH4_5g35150 FvH4_6g35840
malus_domestica	MD04G1034100.v1.1 MD06G1084100.v1.1
prunus_persica	Prupe.2G139100_v2.0.a1 Prupe.5G096900_v2.0.a1 Prupe.5G096900_v2.0.a1 Prupe.5G100500_v2.0.a1 Prupe.5G100500_v2.0.a1 Prupe.5G100500_v2.0.a1
pyrus_communis	pycom04g02850
rosa_chinensis	RchiOBHm_Chr1g0324941 RchiOBHm_Chr1g0340751 RchiOBHm_Chr2g0133721 RchiOBHm_Chr2g0153921 RchiOBHm_Chr4g0396761 RchiOBHm_Chr4g0414291 RchiOBHm_Chr4g0429871 RchiOBHm_Chr4g0446211 RchiOBHm_Chr5g0057181 RchiOBHm_Chr5g0057391 RchiOBHm_Chr5g0077561 RchiOBHm_Chr6g0307121 RchiOBHm_Chr7g0197611
rosa_laevigata	RLG00000003922 RLG00000005681 RLG00000017313 RLG00000029149 RLG00000035152
rosa_multiflora	Rmu_co8043936.1_g000001 Rmu_sc0001164.1_g000009 Rmu_sc0001334.1_g000004 Rmu_sc0004952.1_g000011 Rmu_sc0013154.1_g000007 Rmu_sc0017650.1_g000006 Rmu_sc0018062.1_g000003
rosa_roxburghii	Rroxscaffold_1G00023030 Rroxscaffold_2G00094650 Rroxscaffold_3G00223000 Rroxscaffold_3G00232150 Rroxscaffold_3G00248030 Rroxscaffold_3G00248040 Rroxscaffold_3G00258320
rosa_rugosa	Rorug04G0184600 Rorug04G0368500 Rorug05G0306000 Rorug05G0307100 Rorug07G0041900
rosa_samantha	Rh2CG164400 Rh2DG389300 Rh3AG306800 Rh4AG430600 Rh4BG440000 Rh4CG457300 Rh4DG438500 Rh5AG375500 Rh5BG386300 Rh5CG409700 Rh5DG400300 Rh6CG481100 Rh7AG166300 Rh7AG360600 Rh7BG168400 Rh7CG174700 Rh7DG168000 Rh7DG387600
rosa_wichuraiana	Rw2G022790 Rw4G036780 Rw5G035320 Rw5G035460 Rw7G014480 Rw7G038030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	266
AciI	CCGC	7 cut(s)	91, 102, 129, 173, 186, 213, 266
AclWI	GGATC	1 cut(s)	25
AfiI	CCNNNNNNNGG	1 cut(s)	286
AgsI	TTSAA	1 cut(s)	343
AluBI	AGCT	3 cut(s)	77, 207, 292
AluI	AGCT	3 cut(s)	77, 207, 292
Alw21I	GWGCWC	1 cut(s)	294
AlwI	GGATC	1 cut(s)	25
AoxI	GGCC	1 cut(s)	315
BanII	GRGCYC	1 cut(s)	294
Bbv12I	GWGCWC	1 cut(s)	294
BccI	CCATC	3 cut(s)	72, 184, 229
BfaI	CTAG	2 cut(s)	204, 364
BisI	GCNGC	2 cut(s)	129, 186
BlsI	GCNGC	2 cut(s)	130, 187
BpuEI	CTTGAG	2 cut(s)	274, 278
Bsc4I	CCNNNNNNNGG	1 cut(s)	286
Bse118I	RCCGGY	1 cut(s)	39
Bse3DI	GCAATG	1 cut(s)	34
BseGI	GGATG	2 cut(s)	49, 221
BseLI	CCNNNNNNNGG	1 cut(s)	286
BseMI	GCAATG	1 cut(s)	34
BseMII	CTCAG	1 cut(s)	209
BseRI	GAGGAG	4 cut(s)	77, 271, 284, 302
Bsh1236I	CGCG	1 cut(s)	266
Bsh1285I	CGRYCG	1 cut(s)	183
BshFI	GGCC	1 cut(s)	317
BsiEI	CGRYCG	1 cut(s)	183
BsiHKAI	GWGCWC	1 cut(s)	294
BsiSI	CCGG	1 cut(s)	40
BslI	CCNNNNNNNGG	1 cut(s)	286
BsnI	GGCC	1 cut(s)	317
Bsp1286I	GDGCHC	1 cut(s)	294
Bsp143I	GATC	2 cut(s)	30, 153
BspACI	CCGC	7 cut(s)	91, 102, 129, 173, 186, 213, 266
BspANI	GGCC	1 cut(s)	317
BspCNI	CTCAG	1 cut(s)	208
BspFNI	CGCG	1 cut(s)	266
BspPI	GGATC	1 cut(s)	25
BsrDI	GCAATG	1 cut(s)	34
BsrFI	RCCGGY	1 cut(s)	39
BssAI	RCCGGY	1 cut(s)	39
BssMI	GATC	2 cut(s)	30, 153
BstC8I	GCNNGC	2 cut(s)	41, 306
BstDEI	CTNAG	1 cut(s)	195
BstF5I	GGATG	2 cut(s)	49, 221
BstFNI	CGCG	1 cut(s)	266
BstKTI	GATC	2 cut(s)	33, 156
BstMBI	GATC	2 cut(s)	30, 153
BstMCI	CGRYCG	1 cut(s)	183
BstMWI	GCNNNNNNNGC	2 cut(s)	110, 314
BstUI	CGCG	1 cut(s)	266
BsuRI	GGCC	1 cut(s)	317
BtsCI	GGATG	2 cut(s)	49, 221
Cac8I	GCNNGC	2 cut(s)	41, 306
Cfr10I	RCCGGY	1 cut(s)	39
CviAII	CATG	1 cut(s)	148
CviJI	RGCY	6 cut(s)	77, 199, 207, 292, 317, 322
CviKI_1	RGCY	6 cut(s)	77, 199, 207, 292, 317, 322
DdeI	CTNAG	1 cut(s)	195
DpnI	GATC	2 cut(s)	32, 155
DpnII	GATC	2 cut(s)	30, 153
EciI	GGCGGA	1 cut(s)	80
Ecl136II	GAGCTC	1 cut(s)	292
Eco24I	GRGCYC	1 cut(s)	294
Eco32I	GATATC	1 cut(s)	250
Eco53kI	GAGCTC	1 cut(s)	292
EcoICRI	GAGCTC	1 cut(s)	292
EcoRV	GATATC	1 cut(s)	250
EcoT38I	GRGCYC	1 cut(s)	294
FaeI	CATG	1 cut(s)	151
FaiI	YATR	3 cut(s)	149, 246, 328
FatI	CATG	1 cut(s)	147
FauI	CCCGC	1 cut(s)	109
Fnu4HI	GCNGC	2 cut(s)	129, 186
FokI	GGATG	2 cut(s)	36, 208
FriOI	GRGCYC	1 cut(s)	294
Fsp4HI	GCNGC	2 cut(s)	129, 186
FspBI	CTAG	2 cut(s)	204, 364
GluI	GCNGC	2 cut(s)	129, 186
HaeIII	GGCC	1 cut(s)	317
HapII	CCGG	1 cut(s)	40
Hin1II	CATG	1 cut(s)	151
HinfI	GANTC	2 cut(s)	191, 339
HpaII	CCGG	1 cut(s)	40
Hpy188I	TCNGA	3 cut(s)	12, 71, 160
Hpy188III	TCNNGA	2 cut(s)	253, 295
Hpy99I	CGWCG	3 cut(s)	75, 164, 338
HpyF10VI	GCNNNNNNNGC	2 cut(s)	110, 314
HpyF3I	CTNAG	1 cut(s)	195
Hsp92II	CATG	1 cut(s)	151
KroI	GCCGGC	1 cut(s)	39
KroNI	GCCGGC	1 cut(s)	41
Kzo9I	GATC	2 cut(s)	30, 153
LmnI	GCTCC	1 cut(s)	289
LpnPI	CCDG	3 cut(s)	53, 129, 290
MaeI	CTAG	2 cut(s)	204, 364
MalI	GATC	2 cut(s)	32, 155
MboI	GATC	2 cut(s)	30, 153
MhlI	GDGCHC	1 cut(s)	294
MmeI	TCCRAC	2 cut(s)	94, 183
MroNI	GCCGGC	1 cut(s)	39
MspI	CCGG	1 cut(s)	40
MvnI	CGCG	1 cut(s)	266
MwoI	GCNNNNNNNGC	2 cut(s)	110, 314
NaeI	GCCGGC	1 cut(s)	41
NdeII	GATC	2 cut(s)	30, 153
NgoMIV	GCCGGC	1 cut(s)	39
NlaIII	CATG	1 cut(s)	151
NmeAIII	GCCGAG	1 cut(s)	343
PdiI	GCCGGC	1 cut(s)	41
PfeI	GAWTC	2 cut(s)	191, 339
PflFI	GACNNNGTC	1 cut(s)	164
PkrI	GCNGC	2 cut(s)	130, 187
Psp124BI	GAGCTC	1 cut(s)	294
PsyI	GACNNNGTC	1 cut(s)	164
SacI	GAGCTC	1 cut(s)	294
SatI	GCNGC	2 cut(s)	129, 186
Sau3AI	GATC	2 cut(s)	30, 153
SduI	GDGCHC	1 cut(s)	294
SetI	ASST	8 cut(s)	9, 29, 49, 79, 168, 209, 294, 349
SmlI	CTYRAG	2 cut(s)	253, 293
SmoI	CTYRAG	2 cut(s)	253, 293
SsiI	CCGC	7 cut(s)	91, 102, 129, 173, 186, 213, 266
SspMI	CTAG	2 cut(s)	204, 364
SstI	GAGCTC	1 cut(s)	294
TaqI	TCGA	1 cut(s)	152
TaqII	GACCGA	1 cut(s)	169
TauI	GCSGC	2 cut(s)	131, 188
TfiI	GAWTC	2 cut(s)	191, 339
TspDTI	ATGAA	1 cut(s)	150
TspGWI	ACGGA	2 cut(s)	214, 351
Tth111I	GACNNNGTC	1 cut(s)	164
XspI	CTAG	2 cut(s)	204, 364

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.