RchiOBHm_Chr4g0414291

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000649
Physical Location & Seq
Forward (+)
38768959 .. 38769503
545 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38472

Sequence Viewer

Length: 390 bp
ATGCTGCCCCGCATGAGGTCATGCATGGTTCATCGGGACGCTGCCCGGCATGGTTCATCGGGACGCTGCCCGGCATGGTTCATCGGGACGCTGCTCGGCATGGTTCATCGGAGACGCTGCTCCGGCATGTTGTCTTTGACATCATTGACAGTCGAAGGTGCCGTTGTGGGGAGGGCCTGCAACAGAAAAGAAAAGGAGGTGGAGAGCGATGGAATGAGGTTTGAACCTTTTGTCTTCCAAGCTCCTTTGCTGCTTTCTCCTTCTGCTTTTGCACCACTGCTGTCCTCCCCTTTTCTGCTCTTCATGTGGTGCTTATATACCGCACTCGAGATGAGTTTGGCTTGTGTATACAACATAGAGAGTTTTAGAGTTCAACTTGAAGTGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

14.49

Weight (kDa)

8.91

Isoelectric Point (pI)

67.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000649)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33840
fragaria_vesca FvH4_2g00190 FvH4_4g18133 FvH4_4g36450 FvH4_5g02490 FvH4_5g35150 FvH4_6g35840
malus_domestica MD04G1034100.v1.1 MD06G1084100.v1.1
prunus_persica Prupe.2G139100_v2.0.a1 Prupe.5G096900_v2.0.a1 Prupe.5G096900_v2.0.a1 Prupe.5G100500_v2.0.a1 Prupe.5G100500_v2.0.a1 Prupe.5G100500_v2.0.a1
pyrus_communis pycom04g02850
rosa_chinensis RchiOBHm_Chr1g0324941 RchiOBHm_Chr1g0340751 RchiOBHm_Chr2g0133721 RchiOBHm_Chr2g0153921 RchiOBHm_Chr4g0396761 RchiOBHm_Chr4g0414291 RchiOBHm_Chr4g0429871 RchiOBHm_Chr4g0446211 RchiOBHm_Chr5g0057181 RchiOBHm_Chr5g0057391 RchiOBHm_Chr5g0077561 RchiOBHm_Chr6g0307121 RchiOBHm_Chr7g0197611
rosa_laevigata RLG00000003922 RLG00000005681 RLG00000017313 RLG00000029149 RLG00000035152
rosa_multiflora Rmu_co8043936.1_g000001 Rmu_sc0001164.1_g000009 Rmu_sc0001334.1_g000004 Rmu_sc0004952.1_g000011 Rmu_sc0013154.1_g000007 Rmu_sc0017650.1_g000006 Rmu_sc0018062.1_g000003
rosa_roxburghii Rroxscaffold_1G00023030 Rroxscaffold_2G00094650 Rroxscaffold_3G00223000 Rroxscaffold_3G00232150 Rroxscaffold_3G00248030 Rroxscaffold_3G00248040 Rroxscaffold_3G00258320
rosa_rugosa Rorug04G0184600 Rorug04G0368500 Rorug05G0306000 Rorug05G0307100 Rorug07G0041900
rosa_samantha Rh2CG164400 Rh2DG389300 Rh3AG306800 Rh4AG430600 Rh4BG440000 Rh4CG457300 Rh4DG438500 Rh5AG375500 Rh5BG386300 Rh5CG409700 Rh5DG400300 Rh6CG481100 Rh7AG166300 Rh7AG360600 Rh7BG168400 Rh7CG174700 Rh7DG168000 Rh7DG387600
rosa_wichuraiana Rw2G022790 Rw4G036780 Rw5G035320 Rw5G035460 Rw7G014480 Rw7G038030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 158
AccI GTMKAC 1 cut(s) 348
AciI CCGC 2 cut(s) 10, 321
AfiI CCNNNNNNNGG 2 cut(s) 15, 168
AgsI TTSAA 3 cut(s) 224, 374, 380
AluBI AGCT 1 cut(s) 242
AluI AGCT 1 cut(s) 242
Alw26I GTCTC 1 cut(s) 106
Ama87I CYCGRG 1 cut(s) 326
AoxI GGCC 1 cut(s) 174
ApeKI GCWGC 6 cut(s) 4, 41, 66, 91, 117, 250
AspS9I GGNCC 1 cut(s) 174
AsuC2I CCSGG 2 cut(s) 46, 71
AvaI CYCGRG 1 cut(s) 326
BanI GGYRCC 1 cut(s) 158
BbsI GAAGAC 1 cut(s) 226
BbvI GCAGC 5 cut(s) 28, 53, 78, 104, 237
BccI CCATC 1 cut(s) 203
BceAI ACGGC 1 cut(s) 146
BcnI CCSGG 2 cut(s) 46, 71
BcoDI GTCTC 1 cut(s) 106
BfaI CTAG 1 cut(s) 388
BisI GCNGC 6 cut(s) 5, 42, 67, 92, 118, 251
BlsI GCNGC 6 cut(s) 6, 43, 68, 93, 119, 252
Bme1390I CCNGG 2 cut(s) 46, 71
BmeT110I CYCGRG 1 cut(s) 326
BmgT120I GGNCC 1 cut(s) 174
BmiI GGNNCC 1 cut(s) 160
BmrFI CCNGG 2 cut(s) 46, 71
BpiI GAAGAC 1 cut(s) 226
BpuMI CCSGG 2 cut(s) 46, 71
Bsc4I CCNNNNNNNGG 2 cut(s) 15, 168
BseLI CCNNNNNNNGG 2 cut(s) 15, 168
BseXI GCAGC 5 cut(s) 28, 53, 78, 104, 237
BshFI GGCC 1 cut(s) 176
BshNI GGYRCC 1 cut(s) 158
BsiHKCI CYCGRG 1 cut(s) 326
BsiSI CCGG 3 cut(s) 46, 71, 123
BslFI GGGAC 3 cut(s) 50, 75, 100
BslI CCNNNNNNNGG 2 cut(s) 15, 168
BsmAI GTCTC 1 cut(s) 106
BsmBI CGTCTC 1 cut(s) 106
BsmFI GGGAC 3 cut(s) 50, 75, 100
BsnI GGCC 1 cut(s) 176
BsoBI CYCGRG 1 cut(s) 326
BspACI CCGC 2 cut(s) 10, 321
BspANI GGCC 1 cut(s) 176
BspLI GGNNCC 1 cut(s) 160
BspQI GCTCTTC 1 cut(s) 305
BspT107I GGYRCC 1 cut(s) 158
BssNAI GTATAC 1 cut(s) 349
Bst1107I GTATAC 1 cut(s) 349
Bst4CI ACNGT 1 cut(s) 151
Bst6I CTCTTC 1 cut(s) 305
BstC8I GCNNGC 1 cut(s) 178
BstMAI GTCTC 1 cut(s) 106
BstMWI GCNNNNNNNGC 1 cut(s) 123
BstNSI RCATGY 1 cut(s) 130
BstSCI CCNGG 2 cut(s) 44, 69
BstV1I GCAGC 5 cut(s) 28, 53, 78, 104, 237
BstV2I GAAGAC 1 cut(s) 226
BstZ17I GTATAC 1 cut(s) 349
BsuRI GGCC 1 cut(s) 176
BtgZI GCGATG 1 cut(s) 222
BtsI GCAGTG 1 cut(s) 275
BtsIMutI CAGTG 1 cut(s) 275
Cac8I GCNNGC 1 cut(s) 178
Cfr13I GGNCC 1 cut(s) 174
CseI GACGC 4 cut(s) 47, 72, 97, 123
CviAII CATG 8 cut(s) 13, 21, 25, 50, 75, 100, 127, 304
CviJI RGCY 3 cut(s) 176, 242, 341
CviKI_1 RGCY 3 cut(s) 176, 242, 341
Eam1104I CTCTTC 1 cut(s) 305
EarI CTCTTC 1 cut(s) 305
Eco88I CYCGRG 1 cut(s) 326
EcoO109I RGGNCCY 1 cut(s) 174
EcoT22I ATGCAT 1 cut(s) 26
Esp3I CGTCTC 1 cut(s) 106
FaeI CATG 8 cut(s) 16, 24, 28, 53, 78, 103, 130, 307
FaqI GGGAC 3 cut(s) 50, 75, 100
FatI CATG 8 cut(s) 12, 20, 24, 49, 74, 99, 126, 303
FauI CCCGC 1 cut(s) 17
FblI GTMKAC 1 cut(s) 348
Fnu4HI GCNGC 6 cut(s) 5, 42, 67, 92, 118, 251
Fsp4HI GCNGC 6 cut(s) 5, 42, 67, 92, 118, 251
FspBI CTAG 1 cut(s) 388
GluI GCNGC 6 cut(s) 5, 42, 67, 92, 118, 251
HaeIII GGCC 1 cut(s) 176
HapII CCGG 3 cut(s) 46, 71, 123
HgaI GACGC 4 cut(s) 47, 72, 97, 123
Hin1II CATG 8 cut(s) 16, 24, 28, 53, 78, 103, 130, 307
HpaII CCGG 3 cut(s) 46, 71, 123
Hpy166II GTNNAC 2 cut(s) 349, 385
Hpy188I TCNGA 1 cut(s) 111
Hpy188III TCNNGA 4 cut(s) 35, 60, 85, 328
Hpy8I GTNNAC 2 cut(s) 349, 385
HpyAV CCTTC 2 cut(s) 149, 270
HpyCH4III ACNGT 1 cut(s) 151
HpyCH4V TGCA 3 cut(s) 24, 180, 272
HpyF10VI GCNNNNNNNGC 1 cut(s) 123
Hsp92II CATG 8 cut(s) 16, 24, 28, 53, 78, 103, 130, 307
LguI GCTCTTC 1 cut(s) 305
LmnI GCTCC 2 cut(s) 125, 247
LpnPI CCDG 4 cut(s) 59, 84, 136, 190
Lsp1109I GCAGC 5 cut(s) 28, 53, 78, 104, 237
MaeI CTAG 1 cut(s) 388
MboII GAAGA 2 cut(s) 226, 292
MnlI CCTC 5 cut(s) 9, 165, 190, 210, 295
Mph1103I ATGCAT 1 cut(s) 26
MspI CCGG 3 cut(s) 46, 71, 123
MspR9I CCNGG 2 cut(s) 46, 71
MwoI GCNNNNNNNGC 1 cut(s) 123
NciI CCSGG 2 cut(s) 46, 71
NlaIII CATG 8 cut(s) 16, 24, 28, 53, 78, 103, 130, 307
NlaIV GGNNCC 1 cut(s) 160
NmeAIII GCCGAG 1 cut(s) 75
NsiI ATGCAT 1 cut(s) 26
NspI RCATGY 1 cut(s) 130
PaeR7I CTCGAG 1 cut(s) 326
PciSI GCTCTTC 1 cut(s) 305
PcsI WCGNNNNNNNCGW 1 cut(s) 159
PkrI GCNGC 6 cut(s) 6, 43, 68, 93, 119, 252
PspN4I GGNNCC 1 cut(s) 160
PspPI GGNCC 1 cut(s) 174
SapI GCTCTTC 1 cut(s) 305
SatI GCNGC 6 cut(s) 5, 42, 67, 92, 118, 251
Sau96I GGNCC 1 cut(s) 174
ScrFI CCNGG 2 cut(s) 46, 71
SetI ASST 6 cut(s) 20, 160, 201, 221, 229, 244
Sfr274I CTCGAG 1 cut(s) 326
SlaI CTCGAG 1 cut(s) 326
SmlI CTYRAG 1 cut(s) 326
SmoI CTYRAG 1 cut(s) 326
SsiI CCGC 2 cut(s) 10, 321
SspMI CTAG 1 cut(s) 388
StyD4I CCNGG 2 cut(s) 44, 69
TaaI ACNGT 1 cut(s) 151
TaqI TCGA 2 cut(s) 153, 327
TscAI CASTG 1 cut(s) 282
TseI GCWGC 6 cut(s) 4, 41, 66, 91, 117, 250
TspDTI ATGAA 5 cut(s) 20, 45, 70, 95, 292
TspRI CASTG 1 cut(s) 282
XceI RCATGY 1 cut(s) 130
XhoI CTCGAG 1 cut(s) 326
XmiI GTMKAC 1 cut(s) 348
XspI CTAG 1 cut(s) 388
Zsp2I ATGCAT 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.