FvH4_5g35150

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000649
Physical Location & Seq
Forward (+)
25693168 .. 25693577
410 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g35150.t1

Sequence Viewer

Length: 204 bp
ATGTCGATCTCCGACGAGGTCAAACCGCCGTCGGTCACCGCCGAATCTCAGCCCTCTAGCTCGTCTGCTACTCCATCCGTCCCGCTGAGCTTGGTTGAGAAGTACGATATCTTGAGGAGTGTGTCCAAGATGAGGAGCTCAAGAAGTTGCTGGCGAACAAGGCCGAGCCGATCTGCTACGACGGATTTGAACCTTGGGTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

68

Amino Acids

7.26

Weight (kDa)

9.3

Isoelectric Point (pI)

107.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000649)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33840
fragaria_vesca FvH4_2g00190 FvH4_4g18133 FvH4_4g36450 FvH4_5g02490 FvH4_5g35150 FvH4_6g35840
malus_domestica MD04G1034100.v1.1 MD06G1084100.v1.1
prunus_persica Prupe.2G139100_v2.0.a1 Prupe.5G096900_v2.0.a1 Prupe.5G096900_v2.0.a1 Prupe.5G100500_v2.0.a1 Prupe.5G100500_v2.0.a1 Prupe.5G100500_v2.0.a1
pyrus_communis pycom04g02850
rosa_chinensis RchiOBHm_Chr1g0324941 RchiOBHm_Chr1g0340751 RchiOBHm_Chr2g0133721 RchiOBHm_Chr2g0153921 RchiOBHm_Chr4g0396761 RchiOBHm_Chr4g0414291 RchiOBHm_Chr4g0429871 RchiOBHm_Chr4g0446211 RchiOBHm_Chr5g0057181 RchiOBHm_Chr5g0057391 RchiOBHm_Chr5g0077561 RchiOBHm_Chr6g0307121 RchiOBHm_Chr7g0197611
rosa_laevigata RLG00000003922 RLG00000005681 RLG00000017313 RLG00000029149 RLG00000035152
rosa_multiflora Rmu_co8043936.1_g000001 Rmu_sc0001164.1_g000009 Rmu_sc0001334.1_g000004 Rmu_sc0004952.1_g000011 Rmu_sc0013154.1_g000007 Rmu_sc0017650.1_g000006 Rmu_sc0018062.1_g000003
rosa_roxburghii Rroxscaffold_1G00023030 Rroxscaffold_2G00094650 Rroxscaffold_3G00223000 Rroxscaffold_3G00232150 Rroxscaffold_3G00248030 Rroxscaffold_3G00248040 Rroxscaffold_3G00258320
rosa_rugosa Rorug04G0184600 Rorug04G0368500 Rorug05G0306000 Rorug05G0307100 Rorug07G0041900
rosa_samantha Rh2CG164400 Rh2DG389300 Rh3AG306800 Rh4AG430600 Rh4BG440000 Rh4CG457300 Rh4DG438500 Rh5AG375500 Rh5BG386300 Rh5CG409700 Rh5DG400300 Rh6CG481100 Rh7AG166300 Rh7AG360600 Rh7BG168400 Rh7CG174700 Rh7DG168000 Rh7DG387600
rosa_wichuraiana Rw2G022790 Rw4G036780 Rw5G035320 Rw5G035460 Rw7G014480 Rw7G038030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 26, 39, 83
AfaI GTAC 1 cut(s) 104
AfiI CCNNNNNNNGG 1 cut(s) 132
AgsI TTSAA 1 cut(s) 190
AluBI AGCT 3 cut(s) 60, 90, 138
AluI AGCT 3 cut(s) 60, 90, 138
Alw21I GWGCWC 1 cut(s) 140
AoxI GGCC 1 cut(s) 161
AsuHPI GGTGA 1 cut(s) 28
BanII GRGCYC 1 cut(s) 140
Bbv12I GWGCWC 1 cut(s) 140
BccI CCATC 1 cut(s) 82
BceAI ACGGC 1 cut(s) 13
BfaI CTAG 1 cut(s) 57
BlpI GCTNAGC 1 cut(s) 86
Bpu1102I GCTNAGC 1 cut(s) 86
BpuEI CTTGAG 2 cut(s) 124, 133
BsaJI CCNNGG 1 cut(s) 193
Bsc4I CCNNNNNNNGG 1 cut(s) 132
BseDI CCNNGG 1 cut(s) 193
BseGI GGATG 1 cut(s) 74
BseLI CCNNNNNNNGG 1 cut(s) 132
BseMII CTCAG 2 cut(s) 62, 77
BseRI GAGGAG 2 cut(s) 130, 148
BshFI GGCC 1 cut(s) 163
BsiHKAI GWGCWC 1 cut(s) 140
BslFI GGGAC 1 cut(s) 65
BslI CCNNNNNNNGG 1 cut(s) 132
BsmFI GGGAC 1 cut(s) 65
BsnI GGCC 1 cut(s) 163
Bsp1286I GDGCHC 1 cut(s) 140
Bsp143I GATC 2 cut(s) 6, 170
Bsp1720I GCTNAGC 1 cut(s) 86
BspACI CCGC 3 cut(s) 26, 39, 83
BspANI GGCC 1 cut(s) 163
BspCNI CTCAG 2 cut(s) 61, 78
BssECI CCNNGG 1 cut(s) 193
BssMI GATC 2 cut(s) 6, 170
BssT1I CCWWGG 1 cut(s) 193
BstC8I GCNNGC 1 cut(s) 152
BstDEI CTNAG 2 cut(s) 48, 86
BstEII GGTNACC 1 cut(s) 34
BstF5I GGATG 1 cut(s) 74
BstKTI GATC 2 cut(s) 9, 173
BstMBI GATC 2 cut(s) 6, 170
BstMWI GCNNNNNNNGC 1 cut(s) 160
BstPI GGTNACC 1 cut(s) 34
BsuRI GGCC 1 cut(s) 163
BtsCI GGATG 1 cut(s) 74
Cac8I GCNNGC 1 cut(s) 152
Csp6I GTAC 1 cut(s) 103
CviJI RGCY 6 cut(s) 52, 60, 90, 138, 163, 168
CviKI_1 RGCY 6 cut(s) 52, 60, 90, 138, 163, 168
CviQI GTAC 1 cut(s) 103
DdeI CTNAG 2 cut(s) 48, 86
DpnI GATC 2 cut(s) 8, 172
DpnII GATC 2 cut(s) 6, 170
Ecl136II GAGCTC 1 cut(s) 138
Eco130I CCWWGG 1 cut(s) 193
Eco24I GRGCYC 1 cut(s) 140
Eco32I GATATC 1 cut(s) 109
Eco53kI GAGCTC 1 cut(s) 138
Eco91I GGTNACC 1 cut(s) 34
EcoICRI GAGCTC 1 cut(s) 138
EcoO65I GGTNACC 1 cut(s) 34
EcoRV GATATC 1 cut(s) 109
EcoT14I CCWWGG 1 cut(s) 193
EcoT38I GRGCYC 1 cut(s) 140
ErhI CCWWGG 1 cut(s) 193
FaqI GGGAC 1 cut(s) 65
FauI CCCGC 1 cut(s) 90
FokI GGATG 1 cut(s) 61
FriOI GRGCYC 1 cut(s) 140
FspBI CTAG 1 cut(s) 57
HaeIII GGCC 1 cut(s) 163
HinfI GANTC 1 cut(s) 44
HphI GGTGA 1 cut(s) 28
Hpy188I TCNGA 1 cut(s) 13
Hpy188III TCNNGA 2 cut(s) 112, 141
Hpy99I CGWCG 3 cut(s) 17, 34, 184
HpyF10VI GCNNNNNNNGC 1 cut(s) 160
HpyF3I CTNAG 2 cut(s) 48, 86
Kzo9I GATC 2 cut(s) 6, 170
LmnI GCTCC 1 cut(s) 135
LpnPI CCDG 1 cut(s) 136
MaeI CTAG 1 cut(s) 57
MaeIII GTNAC 1 cut(s) 34
MalI GATC 2 cut(s) 8, 172
MboI GATC 2 cut(s) 6, 170
MhlI GDGCHC 1 cut(s) 140
MmeI TCCRAC 1 cut(s) 36
MnlI CCTC 4 cut(s) 10, 64, 108, 126
MspA1I CMGCKG 1 cut(s) 85
MwoI GCNNNNNNNGC 1 cut(s) 160
NdeII GATC 2 cut(s) 6, 170
NmeAIII GCCGAG 1 cut(s) 189
NmuCI GTSAC 1 cut(s) 34
PfeI GAWTC 1 cut(s) 44
PflFI GACNNNGTC 1 cut(s) 17
Psp124BI GAGCTC 1 cut(s) 140
PspEI GGTNACC 1 cut(s) 34
PsyI GACNNNGTC 1 cut(s) 17
RsaI GTAC 1 cut(s) 104
RsaNI GTAC 1 cut(s) 103
SacI GAGCTC 1 cut(s) 140
Sau3AI GATC 2 cut(s) 6, 170
SduI GDGCHC 1 cut(s) 140
SetI ASST 5 cut(s) 21, 62, 92, 140, 195
SmlI CTYRAG 2 cut(s) 112, 139
SmoI CTYRAG 2 cut(s) 112, 139
SsiI CCGC 3 cut(s) 26, 39, 83
SspMI CTAG 1 cut(s) 57
SstI GAGCTC 1 cut(s) 140
StyI CCWWGG 1 cut(s) 193
TaqI TCGA 1 cut(s) 5
TaqII GACCGA 1 cut(s) 22
TfiI GAWTC 1 cut(s) 44
TseFI GTSAC 1 cut(s) 34
Tsp45I GTSAC 1 cut(s) 34
TspGWI ACGGA 2 cut(s) 67, 197
Tth111I GACNNNGTC 1 cut(s) 17
XspI CTAG 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.