Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000649

Physical Location & Seq

Genomic Coordinates Reverse (-)

41350091 .. 41362029

Gene Structure 11939 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00248040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGAAGAAGTTAAGCATGGTGTCATTTGGATCTGTAGTTCGAATAAAGGTTGGGAGATCCTTTAAACGAATATCTTTCATTCCTGGAACCATGTCTATCACTTTGTCAAAAAATCCATTTGTGAAACAGGCCTCATCTACAGTACGTACCAACATTCAGGAAAGGCTAAAGGGGCTGGAGATTGGGGAGAAGAAGGTGAAGGTTGAGAGAGAAAGTCCGGATGAGAGGTACAACCTGCTTAGGAGCATCTCGGAGGAGTGTATCCTAGAAGAAGAGCTCAAGAATTTATTGGATAAGAAGACCGAGCCGATCCGCTACGTTGGCTTTGAGCCCTCCGGTAGAATGCATATTGCTCGGGGAGTTTTGAAGGCAATTAATGTGAACAAGATGATTTTCGCAGGCTGCAGAGTGAAGATATGGATTACCAATTGGTTTGCGCAGCTAAACATTAAGATGGGGGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004812 GO:0004831 GO:0005488 GO:0005515 GO:0005524 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006437 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016597 GO:0016874 GO:0016875 GO:0017076 GO:0019538 GO:0019752 GO:0030554 GO:0031406 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034645 GO:0034660 GO:0035639 GO:0036094 GO:0042802 GO:0042803 GO:0043038 GO:0043039 GO:0043043 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043177 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0046483 GO:0046983 GO:0071704 GO:0072545 GO:0090304 GO:0097159 GO:0097367 GO:0140098 GO:0140101 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_1b

Protein Analysis

154

Amino Acids

17.59

Weight (kDa)

10.14

Isoelectric Point (pI)

52.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1b	PF00579	101 - 149	8e-06	tRNA synthetases class I (W and Y)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33840
fragaria_vesca	FvH4_2g00190 FvH4_4g18133 FvH4_4g36450 FvH4_5g02490 FvH4_5g35150 FvH4_6g35840
malus_domestica	MD04G1034100.v1.1 MD06G1084100.v1.1
prunus_persica	Prupe.2G139100_v2.0.a1 Prupe.5G096900_v2.0.a1 Prupe.5G096900_v2.0.a1 Prupe.5G100500_v2.0.a1 Prupe.5G100500_v2.0.a1 Prupe.5G100500_v2.0.a1
pyrus_communis	pycom04g02850
rosa_chinensis	RchiOBHm_Chr1g0324941 RchiOBHm_Chr1g0340751 RchiOBHm_Chr2g0133721 RchiOBHm_Chr2g0153921 RchiOBHm_Chr4g0396761 RchiOBHm_Chr4g0414291 RchiOBHm_Chr4g0429871 RchiOBHm_Chr4g0446211 RchiOBHm_Chr5g0057181 RchiOBHm_Chr5g0057391 RchiOBHm_Chr5g0077561 RchiOBHm_Chr6g0307121 RchiOBHm_Chr7g0197611
rosa_laevigata	RLG00000003922 RLG00000005681 RLG00000017313 RLG00000029149 RLG00000035152
rosa_multiflora	Rmu_co8043936.1_g000001 Rmu_sc0001164.1_g000009 Rmu_sc0001334.1_g000004 Rmu_sc0004952.1_g000011 Rmu_sc0013154.1_g000007 Rmu_sc0017650.1_g000006 Rmu_sc0018062.1_g000003
rosa_roxburghii	Rroxscaffold_1G00023030 Rroxscaffold_2G00094650 Rroxscaffold_3G00223000 Rroxscaffold_3G00232150 Rroxscaffold_3G00248030 Rroxscaffold_3G00248040 Rroxscaffold_3G00258320
rosa_rugosa	Rorug04G0184600 Rorug04G0368500 Rorug05G0306000 Rorug05G0307100 Rorug07G0041900
rosa_samantha	Rh2CG164400 Rh2DG389300 Rh3AG306800 Rh4AG430600 Rh4BG440000 Rh4CG457300 Rh4DG438500 Rh5AG375500 Rh5BG386300 Rh5CG409700 Rh5DG400300 Rh6CG481100 Rh7AG166300 Rh7AG360600 Rh7BG168400 Rh7CG174700 Rh7DG168000 Rh7DG387600
rosa_wichuraiana	Rw2G022790 Rw4G036780 Rw5G035320 Rw5G035460 Rw7G014480 Rw7G038030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	438
Acc36I	ACCTGC	1 cut(s)	243
AccIII	TCCGGA	1 cut(s)	217
AciI	CCGC	1 cut(s)	313
AclWI	GGATC	3 cut(s)	37, 51, 304
AcsI	RAATTY	1 cut(s)	283
AfaI	GTAC	3 cut(s)	144, 148, 230
AgsI	TTSAA	1 cut(s)	367
AjnI	CCWGG	1 cut(s)	82
AloI	GAACNNNNNNTCC	2 cut(s)	21, 53
AluBI	AGCT	2 cut(s)	277, 442
AluI	AGCT	2 cut(s)	277, 442
Alw21I	GWGCWC	1 cut(s)	279
AlwI	GGATC	3 cut(s)	37, 51, 304
Ama87I	CYCGRG	1 cut(s)	354
Aor13HI	TCCGGA	1 cut(s)	217
AoxI	GGCC	1 cut(s)	129
ApeKI	GCWGC	2 cut(s)	402, 439
ApoI	RAATTY	1 cut(s)	283
AseI	ATTAAT	1 cut(s)	375
AspLEI	GCGC	1 cut(s)	439
AsuHPI	GGTGA	1 cut(s)	208
AsuII	TTCGAA	1 cut(s)	40
AvaI	CYCGRG	1 cut(s)	354
BanII	GRGCYC	2 cut(s)	279, 333
BbsI	GAAGAC	1 cut(s)	305
Bbv12I	GWGCWC	1 cut(s)	279
BbvI	GCAGC	2 cut(s)	389, 451
BccI	CCATC	1 cut(s)	448
BcgI	CGANNNNNNTGC	2 cut(s)	335, 369
BciT130I	CCWGG	1 cut(s)	84
BciVI	GTATCC	1 cut(s)	272
BfaI	CTAG	1 cut(s)	266
BfmI	CTRYAG	3 cut(s)	33, 138, 403
BfuAI	ACCTGC	1 cut(s)	243
BfuI	GTATCC	1 cut(s)	272
BisI	GCNGC	2 cut(s)	403, 440
BlsI	GCNGC	2 cut(s)	404, 441
Bme1390I	CCNGG	1 cut(s)	84
BmeT110I	CYCGRG	1 cut(s)	354
BmiI	GGNNCC	1 cut(s)	88
BmrFI	CCNGG	1 cut(s)	84
BmsI	GCATC	1 cut(s)	255
BpiI	GAAGAC	1 cut(s)	305
BpmI	CTGGAG	1 cut(s)	197
Bpu10I	CCTNAGC	1 cut(s)	239
Bpu14I	TTCGAA	1 cut(s)	40
BpuEI	CTTGAG	1 cut(s)	263
BsaAI	YACGTR	1 cut(s)	146
BsaWI	WCCGGW	2 cut(s)	217, 335
BseAI	TCCGGA	1 cut(s)	217
BseBI	CCWGG	1 cut(s)	84
BseGI	GGATG	1 cut(s)	226
BseRI	GAGGAG	1 cut(s)	269
BseXI	GCAGC	2 cut(s)	389, 451
BshFI	GGCC	1 cut(s)	131
BsiHKAI	GWGCWC	1 cut(s)	279
BsiHKCI	CYCGRG	1 cut(s)	354
BsiSI	CCGG	2 cut(s)	218, 336
BsmI	GAATGC	1 cut(s)	348
BsnI	GGCC	1 cut(s)	131
BsoBI	CYCGRG	1 cut(s)	354
Bsp119I	TTCGAA	1 cut(s)	40
Bsp1286I	GDGCHC	2 cut(s)	279, 333
Bsp13I	TCCGGA	1 cut(s)	217
Bsp143I	GATC	3 cut(s)	29, 56, 309
BspACI	CCGC	1 cut(s)	313
BspANI	GGCC	1 cut(s)	131
BspEI	TCCGGA	1 cut(s)	217
BspLI	GGNNCC	1 cut(s)	88
BspMAI	CTGCAG	1 cut(s)	407
BspMI	ACCTGC	1 cut(s)	243
BspPI	GGATC	3 cut(s)	37, 51, 304
BspQI	GCTCTTC	1 cut(s)	267
BspT104I	TTCGAA	1 cut(s)	40
BssMI	GATC	3 cut(s)	29, 56, 309
Bst2UI	CCWGG	1 cut(s)	84
Bst4CI	ACNGT	1 cut(s)	142
Bst6I	CTCTTC	1 cut(s)	267
BstBAI	YACGTR	1 cut(s)	146
BstBI	TTCGAA	1 cut(s)	40
BstC8I	GCNNGC	1 cut(s)	400
BstDEI	CTNAG	1 cut(s)	239
BstF5I	GGATG	1 cut(s)	226
BstHHI	GCGC	1 cut(s)	439
BstKTI	GATC	3 cut(s)	32, 59, 312
BstMBI	GATC	3 cut(s)	29, 56, 309
BstMWI	GCNNNNNNNGC	2 cut(s)	172, 321
BstNI	CCWGG	1 cut(s)	84
BstSCI	CCNGG	1 cut(s)	82
BstSFI	CTRYAG	3 cut(s)	33, 138, 403
BstSNI	TACGTA	1 cut(s)	146
BstV1I	GCAGC	2 cut(s)	389, 451
BstV2I	GAAGAC	1 cut(s)	305
BstX2I	RGATCY	2 cut(s)	29, 56
BstYI	RGATCY	2 cut(s)	29, 56
BsuI	GTATCC	1 cut(s)	272
BsuRI	GGCC	1 cut(s)	131
BtsCI	GGATG	1 cut(s)	226
BveI	ACCTGC	1 cut(s)	243
Cac8I	GCNNGC	1 cut(s)	400
CfoI	GCGC	1 cut(s)	439
Csp6I	GTAC	3 cut(s)	143, 147, 229
CviAII	CATG	2 cut(s)	16, 91
CviJI	RGCY	9 cut(s)	131, 166, 175, 277, 307, 324, 331, 402, 442
CviKI_1	RGCY	9 cut(s)	131, 166, 175, 277, 307, 324, 331, 402, 442
CviQI	GTAC	3 cut(s)	143, 147, 229
DdeI	CTNAG	1 cut(s)	239
DpnI	GATC	3 cut(s)	31, 58, 311
DpnII	GATC	3 cut(s)	29, 56, 309
DraI	TTTAAA	1 cut(s)	64
Eam1104I	CTCTTC	1 cut(s)	267
EarI	CTCTTC	1 cut(s)	267
Ecl136II	GAGCTC	1 cut(s)	277
Eco105I	TACGTA	1 cut(s)	146
Eco147I	AGGCCT	1 cut(s)	131
Eco24I	GRGCYC	2 cut(s)	279, 333
Eco53kI	GAGCTC	1 cut(s)	277
Eco88I	CYCGRG	1 cut(s)	354
EcoICRI	GAGCTC	1 cut(s)	277
EcoRII	CCWGG	1 cut(s)	82
EcoT22I	ATGCAT	1 cut(s)	348
EcoT38I	GRGCYC	2 cut(s)	279, 333
FaeI	CATG	2 cut(s)	19, 94
FaiI	YATR	4 cut(s)	17, 92, 348, 418
FatI	CATG	2 cut(s)	15, 90
Fnu4HI	GCNGC	2 cut(s)	403, 440
FokI	GGATG	1 cut(s)	233
FriOI	GRGCYC	2 cut(s)	279, 333
Fsp4HI	GCNGC	2 cut(s)	403, 440
FspBI	CTAG	1 cut(s)	266
FspI	TGCGCA	1 cut(s)	438
GlaI	GCGC	1 cut(s)	438
GluI	GCNGC	2 cut(s)	403, 440
GsuI	CTGGAG	1 cut(s)	197
HaeIII	GGCC	1 cut(s)	131
HapII	CCGG	2 cut(s)	218, 336
HhaI	GCGC	1 cut(s)	439
Hin1II	CATG	2 cut(s)	19, 94
Hin6I	GCGC	1 cut(s)	437
HinP1I	GCGC	1 cut(s)	437
HpaII	CCGG	2 cut(s)	218, 336
HphI	GGTGA	1 cut(s)	208
Hpy166II	GTNNAC	1 cut(s)	382
Hpy188I	TCNGA	1 cut(s)	253
Hpy188III	TCNNGA	3 cut(s)	158, 218, 280
Hpy8I	GTNNAC	1 cut(s)	382
HpyAV	CCTTC	3 cut(s)	187, 193, 361
HpyCH4III	ACNGT	1 cut(s)	142
HpyCH4IV	ACGT	2 cut(s)	145, 318
HpyCH4V	TGCA	2 cut(s)	346, 405
HpyF10VI	GCNNNNNNNGC	2 cut(s)	172, 321
HpyF3I	CTNAG	1 cut(s)	239
HpySE526I	ACGT	2 cut(s)	145, 318
Hsp92II	CATG	2 cut(s)	19, 94
HspAI	GCGC	1 cut(s)	437
Kpn2I	TCCGGA	1 cut(s)	217
Kzo9I	GATC	3 cut(s)	29, 56, 309
LguI	GCTCTTC	1 cut(s)	267
LmnI	GCTCC	1 cut(s)	243
LpnPI	CCDG	9 cut(s)	69, 96, 113, 143, 161, 231, 248, 349, 384
Lsp1109I	GCAGC	2 cut(s)	389, 451
LweI	GCATC	1 cut(s)	255
MaeI	CTAG	1 cut(s)	266
MaeII	ACGT	2 cut(s)	145, 318
MalI	GATC	3 cut(s)	31, 58, 311
MboI	GATC	3 cut(s)	29, 56, 309
MboII	GAAGA	6 cut(s)	16, 202, 281, 284, 310, 424
MfeI	CAATTG	1 cut(s)	427
MflI	RGATCY	2 cut(s)	29, 56
MhlI	GDGCHC	2 cut(s)	279, 333
MluCI	AATT	3 cut(s)	283, 372, 427
MnlI	CCTC	4 cut(s)	142, 219, 247, 343
Mph1103I	ATGCAT	1 cut(s)	348
MroI	TCCGGA	1 cut(s)	217
MseI	TTAA	4 cut(s)	11, 63, 375, 450
MslI	CAYNNNNRTG	1 cut(s)	452
MspI	CCGG	2 cut(s)	218, 336
MspR9I	CCNGG	1 cut(s)	84
MunI	CAATTG	1 cut(s)	427
Mva1269I	GAATGC	1 cut(s)	348
MvaI	CCWGG	1 cut(s)	84
MwoI	GCNNNNNNNGC	2 cut(s)	172, 321
NdeII	GATC	3 cut(s)	29, 56, 309
NlaIII	CATG	2 cut(s)	19, 94
NlaIV	GGNNCC	1 cut(s)	88
NsbI	TGCGCA	1 cut(s)	438
NsiI	ATGCAT	1 cut(s)	348
NspV	TTCGAA	1 cut(s)	40
PceI	AGGCCT	1 cut(s)	131
PciSI	GCTCTTC	1 cut(s)	267
PctI	GAATGC	1 cut(s)	348
PfoI	TCCNGGA	1 cut(s)	82
PkrI	GCNGC	2 cut(s)	404, 441
Ppu21I	YACGTR	1 cut(s)	146
PshBI	ATTAAT	1 cut(s)	375
Psp124BI	GAGCTC	1 cut(s)	279
Psp6I	CCWGG	1 cut(s)	82
PspGI	CCWGG	1 cut(s)	82
PspN4I	GGNNCC	1 cut(s)	88
PstI	CTGCAG	1 cut(s)	407
PsuI	RGATCY	2 cut(s)	29, 56
RsaI	GTAC	3 cut(s)	144, 148, 230
RsaNI	GTAC	3 cut(s)	143, 147, 229
RseI	CAYNNNNRTG	1 cut(s)	452
SacI	GAGCTC	1 cut(s)	279
SapI	GCTCTTC	1 cut(s)	267
SaqAI	TTAA	4 cut(s)	11, 63, 375, 450
SatI	GCNGC	2 cut(s)	403, 440
Sau3AI	GATC	3 cut(s)	29, 56, 309
ScrFI	CCNGG	1 cut(s)	84
SduI	GDGCHC	2 cut(s)	279, 333
SetI	ASST	9 cut(s)	51, 148, 198, 204, 230, 237, 279, 321, 444
SfaNI	GCATC	1 cut(s)	255
SfcI	CTRYAG	3 cut(s)	33, 138, 403
SfuI	TTCGAA	1 cut(s)	40
SmiMI	CAYNNNNRTG	1 cut(s)	452
SmlI	CTYRAG	1 cut(s)	278
SmoI	CTYRAG	1 cut(s)	278
SnaBI	TACGTA	1 cut(s)	146
Sse9I	AATT	3 cut(s)	283, 372, 427
SseBI	AGGCCT	1 cut(s)	131
SsiI	CCGC	1 cut(s)	313
SspMI	CTAG	1 cut(s)	266
SstI	GAGCTC	1 cut(s)	279
StuI	AGGCCT	1 cut(s)	131
StyD4I	CCNGG	1 cut(s)	82
TaaI	ACNGT	1 cut(s)	142
TaiI	ACGT	2 cut(s)	148, 321
TaqI	TCGA	1 cut(s)	40
TaqII	GACCGA	1 cut(s)	317
TasI	AATT	3 cut(s)	283, 372, 427
Tru1I	TTAA	4 cut(s)	11, 63, 375, 450
Tru9I	TTAA	4 cut(s)	11, 63, 375, 450
TseI	GCWGC	2 cut(s)	402, 439
TspDTI	ATGAA	2 cut(s)	17, 67
VspI	ATTAAT	1 cut(s)	375
XapI	RAATTY	1 cut(s)	283
XspI	CTAG	1 cut(s)	266
Zsp2I	ATGCAT	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.