Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8043936.1

Orthogroup ID

OG0000649

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 555

Gene Structure 555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8043936.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 352 bp

tctctctaatggcaaccgaagcaccggagcaagtccccgccgacgaaatcaaatcgatgtcgatcgctgactctgagtcgcaagaccagcccgcaagctcgtccactccatctgtcccattgagtttggatgagaggttcaagctacttaggggcatcgcagaggagtgtatccacgaagaagagctcaagaatttgctggctaagaaggccgatccgatctgctacgacggctttgagccctccgggagaatgcatatcgctcagggagttttgaaggcaattaatgtgaacaagatgattgacggaggctgcaaagtgaagatatggattgccgattggtttgcgcagct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004812 GO:0004831 GO:0005488 GO:0005515 GO:0005524 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006437 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016597 GO:0016874 GO:0016875 GO:0017076 GO:0019538 GO:0019752 GO:0030554 GO:0031406 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034645 GO:0034660 GO:0035639 GO:0036094 GO:0042802 GO:0042803 GO:0043038 GO:0043039 GO:0043043 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043177 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0046483 GO:0046983 GO:0071704 GO:0072545 GO:0090304 GO:0097159 GO:0097367 GO:0140098 GO:0140101 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_1b

Protein Analysis

117

Amino Acids

12.84

Weight (kDa)

4.74

Isoelectric Point (pI)

67.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33840
fragaria_vesca	FvH4_2g00190 FvH4_4g18133 FvH4_4g36450 FvH4_5g02490 FvH4_5g35150 FvH4_6g35840
malus_domestica	MD04G1034100.v1.1 MD06G1084100.v1.1
prunus_persica	Prupe.2G139100_v2.0.a1 Prupe.5G096900_v2.0.a1 Prupe.5G096900_v2.0.a1 Prupe.5G100500_v2.0.a1 Prupe.5G100500_v2.0.a1 Prupe.5G100500_v2.0.a1
pyrus_communis	pycom04g02850
rosa_chinensis	RchiOBHm_Chr1g0324941 RchiOBHm_Chr1g0340751 RchiOBHm_Chr2g0133721 RchiOBHm_Chr2g0153921 RchiOBHm_Chr4g0396761 RchiOBHm_Chr4g0414291 RchiOBHm_Chr4g0429871 RchiOBHm_Chr4g0446211 RchiOBHm_Chr5g0057181 RchiOBHm_Chr5g0057391 RchiOBHm_Chr5g0077561 RchiOBHm_Chr6g0307121 RchiOBHm_Chr7g0197611
rosa_laevigata	RLG00000003922 RLG00000005681 RLG00000017313 RLG00000029149 RLG00000035152
rosa_multiflora	Rmu_co8043936.1_g000001 Rmu_sc0001164.1_g000009 Rmu_sc0001334.1_g000004 Rmu_sc0004952.1_g000011 Rmu_sc0013154.1_g000007 Rmu_sc0017650.1_g000006 Rmu_sc0018062.1_g000003
rosa_roxburghii	Rroxscaffold_1G00023030 Rroxscaffold_2G00094650 Rroxscaffold_3G00223000 Rroxscaffold_3G00232150 Rroxscaffold_3G00248030 Rroxscaffold_3G00248040 Rroxscaffold_3G00258320
rosa_rugosa	Rorug04G0184600 Rorug04G0368500 Rorug05G0306000 Rorug05G0307100 Rorug07G0041900
rosa_samantha	Rh2CG164400 Rh2DG389300 Rh3AG306800 Rh4AG430600 Rh4BG440000 Rh4CG457300 Rh4DG438500 Rh5AG375500 Rh5BG386300 Rh5CG409700 Rh5DG400300 Rh6CG481100 Rh7AG166300 Rh7AG360600 Rh7BG168400 Rh7CG174700 Rh7DG168000 Rh7DG387600
rosa_wichuraiana	Rw2G022790 Rw4G036780 Rw5G035320 Rw5G035460 Rw7G014480 Rw7G038030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	347
AciI	CCGC	2 cut(s)	38, 92
AclWI	GGATC	1 cut(s)	208
AcsI	RAATTY	1 cut(s)	192
AgsI	TTSAA	2 cut(s)	141, 276
AhdI	GACNNNNNGTC	1 cut(s)	75
AloI	GAACNNNNNNTCC	2 cut(s)	121, 153
AluBI	AGCT	4 cut(s)	98, 144, 186, 351
AluI	AGCT	4 cut(s)	98, 144, 186, 351
Alw21I	GWGCWC	1 cut(s)	188
AlwI	GGATC	1 cut(s)	208
AoxI	GGCC	1 cut(s)	209
ApeKI	GCWGC	2 cut(s)	311, 348
ApoI	RAATTY	1 cut(s)	192
AseI	ATTAAT	1 cut(s)	284
AspLEI	GCGC	1 cut(s)	348
AsuC2I	CCSGG	1 cut(s)	246
BanII	GRGCYC	2 cut(s)	188, 242
Bbv12I	GWGCWC	1 cut(s)	188
BbvI	GCAGC	1 cut(s)	298
BccI	CCATC	1 cut(s)	117
BceAI	ACGGC	1 cut(s)	246
BcgI	CGANNNNNNTGC	1 cut(s)	325
BciVI	GTATCC	1 cut(s)	181
BcnI	CCSGG	1 cut(s)	246
BfuI	GTATCC	1 cut(s)	181
BisI	GCNGC	2 cut(s)	312, 349
BlsI	GCNGC	2 cut(s)	313, 350
Bme1390I	CCNGG	1 cut(s)	246
BmeRI	GACNNNNNGTC	1 cut(s)	75
BmrFI	CCNGG	1 cut(s)	246
BmsI	GCATC	1 cut(s)	164
Bpu10I	CCTNAGC	1 cut(s)	263
BpuEI	CTTGAG	1 cut(s)	172
BpuMI	CCSGG	1 cut(s)	246
Bsa29I	ATCGAT	1 cut(s)	55
BsaBI	GATNNNNATC	1 cut(s)	61
BsaWI	WCCGGW	1 cut(s)	24
Bse8I	GATNNNNATC	1 cut(s)	61
BseCI	ATCGAT	1 cut(s)	55
BseGI	GGATG	1 cut(s)	135
BseJI	GATNNNNATC	1 cut(s)	61
BseMII	CTCAG	2 cut(s)	65, 277
BseRI	GAGGAG	1 cut(s)	178
BseXI	GCAGC	1 cut(s)	298
Bsh1285I	CGRYCG	1 cut(s)	65
BshFI	GGCC	1 cut(s)	211
BshVI	ATCGAT	1 cut(s)	55
BsiEI	CGRYCG	1 cut(s)	65
BsiHKAI	GWGCWC	1 cut(s)	188
BsiSI	CCGG	2 cut(s)	25, 245
BslFI	GGGAC	2 cut(s)	19, 100
BsmFI	GGGAC	2 cut(s)	19, 100
BsmI	GAATGC	1 cut(s)	257
BsnI	GGCC	1 cut(s)	211
Bsp1286I	GDGCHC	2 cut(s)	188, 242
Bsp143I	GATC	3 cut(s)	62, 213, 218
BspACI	CCGC	2 cut(s)	38, 92
BspANI	GGCC	1 cut(s)	211
BspCNI	CTCAG	2 cut(s)	66, 276
BspDI	ATCGAT	1 cut(s)	55
BspPI	GGATC	1 cut(s)	208
BspQI	GCTCTTC	1 cut(s)	176
BssMI	GATC	3 cut(s)	62, 213, 218
Bst6I	CTCTTC	1 cut(s)	176
BstC8I	GCNNGC	3 cut(s)	92, 96, 200
BstDEI	CTNAG	4 cut(s)	74, 148, 203, 263
BstF5I	GGATG	1 cut(s)	135
BstHHI	GCGC	1 cut(s)	348
BstKTI	GATC	3 cut(s)	65, 216, 221
BstMBI	GATC	3 cut(s)	62, 213, 218
BstMCI	CGRYCG	1 cut(s)	65
BstMWI	GCNNNNNNNGC	4 cut(s)	19, 87, 208, 230
BstSCI	CCNGG	1 cut(s)	244
BstV1I	GCAGC	1 cut(s)	298
Bsu15I	ATCGAT	1 cut(s)	55
BsuI	GTATCC	1 cut(s)	181
BsuRI	GGCC	1 cut(s)	211
BsuTUI	ATCGAT	1 cut(s)	55
BtgZI	GCGATG	1 cut(s)	141
BtsCI	GGATG	1 cut(s)	135
Cac8I	GCNNGC	3 cut(s)	92, 96, 200
CfoI	GCGC	1 cut(s)	348
ClaI	ATCGAT	1 cut(s)	55
DdeI	CTNAG	4 cut(s)	74, 148, 203, 263
DpnI	GATC	3 cut(s)	64, 215, 220
DpnII	GATC	3 cut(s)	62, 213, 218
DriI	GACNNNNNGTC	1 cut(s)	75
Eam1104I	CTCTTC	1 cut(s)	176
Eam1105I	GACNNNNNGTC	1 cut(s)	75
EarI	CTCTTC	1 cut(s)	176
Ecl136II	GAGCTC	1 cut(s)	186
Eco24I	GRGCYC	2 cut(s)	188, 242
Eco53kI	GAGCTC	1 cut(s)	186
EcoICRI	GAGCTC	1 cut(s)	186
EcoT22I	ATGCAT	1 cut(s)	257
EcoT38I	GRGCYC	2 cut(s)	188, 242
FaiI	YATR	2 cut(s)	257, 327
FaqI	GGGAC	2 cut(s)	19, 100
FauI	CCCGC	2 cut(s)	45, 99
Fnu4HI	GCNGC	2 cut(s)	312, 349
FokI	GGATG	1 cut(s)	142
FriOI	GRGCYC	2 cut(s)	188, 242
Fsp4HI	GCNGC	2 cut(s)	312, 349
FspI	TGCGCA	1 cut(s)	347
GlaI	GCGC	1 cut(s)	347
GluI	GCNGC	2 cut(s)	312, 349
HaeIII	GGCC	1 cut(s)	211
HapII	CCGG	2 cut(s)	25, 245
HhaI	GCGC	1 cut(s)	348
Hin6I	GCGC	1 cut(s)	346
HinP1I	GCGC	1 cut(s)	346
HinfI	GANTC	2 cut(s)	70, 76
HpaII	CCGG	2 cut(s)	25, 245
Hpy166II	GTNNAC	2 cut(s)	104, 291
Hpy188I	TCNGA	2 cut(s)	75, 218
Hpy188III	TCNNGA	1 cut(s)	189
Hpy8I	GTNNAC	2 cut(s)	104, 291
Hpy99I	CGWCG	2 cut(s)	46, 232
HpyAV	CCTTC	2 cut(s)	201, 270
HpyCH4V	TGCA	2 cut(s)	255, 314
HpyF10VI	GCNNNNNNNGC	4 cut(s)	19, 87, 208, 230
HpyF3I	CTNAG	4 cut(s)	74, 148, 203, 263
HspAI	GCGC	1 cut(s)	346
Kzo9I	GATC	3 cut(s)	62, 213, 218
LguI	GCTCTTC	1 cut(s)	176
LmnI	GCTCC	1 cut(s)	27
LpnPI	CCDG	5 cut(s)	38, 100, 184, 250, 258
Lsp1109I	GCAGC	1 cut(s)	298
LweI	GCATC	1 cut(s)	164
MalI	GATC	3 cut(s)	64, 215, 220
MboI	GATC	3 cut(s)	62, 213, 218
MboII	GAAGA	3 cut(s)	190, 193, 333
MhlI	GDGCHC	2 cut(s)	188, 242
MluCI	AATT	2 cut(s)	192, 281
MlyI	GAGTC	2 cut(s)	64, 85
MnlI	CCTC	4 cut(s)	128, 156, 252, 301
Mph1103I	ATGCAT	1 cut(s)	257
MseI	TTAA	1 cut(s)	284
MspI	CCGG	2 cut(s)	25, 245
MspR9I	CCNGG	1 cut(s)	246
Mva1269I	GAATGC	1 cut(s)	257
MwoI	GCNNNNNNNGC	4 cut(s)	19, 87, 208, 230
NciI	CCSGG	1 cut(s)	246
NdeII	GATC	3 cut(s)	62, 213, 218
NsbI	TGCGCA	1 cut(s)	347
NsiI	ATGCAT	1 cut(s)	257
PciSI	GCTCTTC	1 cut(s)	176
PctI	GAATGC	1 cut(s)	257
PfoI	TCCNGGA	1 cut(s)	244
PkrI	GCNGC	2 cut(s)	313, 350
Ple19I	CGATCG	1 cut(s)	65
PleI	GAGTC	2 cut(s)	64, 84
PpsI	GAGTC	2 cut(s)	64, 84
PshBI	ATTAAT	1 cut(s)	284
Psp124BI	GAGCTC	1 cut(s)	188
PvuI	CGATCG	1 cut(s)	65
SacI	GAGCTC	1 cut(s)	188
SapI	GCTCTTC	1 cut(s)	176
SaqAI	TTAA	1 cut(s)	284
SatI	GCNGC	2 cut(s)	312, 349
Sau3AI	GATC	3 cut(s)	62, 213, 218
SchI	GAGTC	2 cut(s)	64, 85
ScrFI	CCNGG	1 cut(s)	246
SduI	GDGCHC	2 cut(s)	188, 242
SetI	ASST	4 cut(s)	100, 139, 146, 188
SfaNI	GCATC	1 cut(s)	164
SmlI	CTYRAG	1 cut(s)	187
SmoI	CTYRAG	1 cut(s)	187
Sse9I	AATT	2 cut(s)	192, 281
SsiI	CCGC	2 cut(s)	38, 92
SstI	GAGCTC	1 cut(s)	188
StyD4I	CCNGG	1 cut(s)	244
TaqI	TCGA	2 cut(s)	55, 61
TasI	AATT	2 cut(s)	192, 281
Tru1I	TTAA	1 cut(s)	284
Tru9I	TTAA	1 cut(s)	284
TseI	GCWGC	2 cut(s)	311, 348
TspGWI	ACGGA	1 cut(s)	320
VspI	ATTAAT	1 cut(s)	284
XapI	RAATTY	1 cut(s)	192
Zsp2I	ATGCAT	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.