Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004952.1

Orthogroup ID

OG0000649

Physical Location & Seq

Genomic Coordinates Forward (+)

34460 .. 36694

Gene Structure 2235 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004952.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

atggcattgacacgtcgaaggaaggcgaagaagatggtggctacggtgagtccaccctggtggttggagatcggtggcggaggagagagattcctctatatccactttctctctcctccctctctctcgtctgtgcttttctcttctctcttgtctgtactatggggcgatttgaagaagattgagacagtggggaagtattttattgagatatggaggtctgtggggatgaatctggacagtggcaaagttgagtttatgtggtcttctaaggagatcaatgccaggtctcatgagtactggccgtgtgtaatggatattgccaggaaaaacaagcttccgaggatcattaggtgtagtcaaattatgggtcgaacggatcaagaagagttaacagctgcccaaatcctctacccgtgggctgatctttccgatgctgatctaaggggtacagacttatcattggccaatgtgacaaaggtgagcattgatggaactcttctccctgttcaatttataagaaatacttatgcagttcgttcgcattattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004812 GO:0004831 GO:0005488 GO:0005515 GO:0005524 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006437 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016597 GO:0016874 GO:0016875 GO:0017076 GO:0019538 GO:0019752 GO:0030554 GO:0031406 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034645 GO:0034660 GO:0035639 GO:0036094 GO:0042802 GO:0042803 GO:0043038 GO:0043039 GO:0043043 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043177 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0046483 GO:0046983 GO:0071704 GO:0072545 GO:0090304 GO:0097159 GO:0097367 GO:0140098 GO:0140101 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_1b

Protein Analysis

183

Amino Acids

20.9

Weight (kDa)

9.42

Isoelectric Point (pI)

53.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33840
fragaria_vesca	FvH4_2g00190 FvH4_4g18133 FvH4_4g36450 FvH4_5g02490 FvH4_5g35150 FvH4_6g35840
malus_domestica	MD04G1034100.v1.1 MD06G1084100.v1.1
prunus_persica	Prupe.2G139100_v2.0.a1 Prupe.5G096900_v2.0.a1 Prupe.5G096900_v2.0.a1 Prupe.5G100500_v2.0.a1 Prupe.5G100500_v2.0.a1 Prupe.5G100500_v2.0.a1
pyrus_communis	pycom04g02850
rosa_chinensis	RchiOBHm_Chr1g0324941 RchiOBHm_Chr1g0340751 RchiOBHm_Chr2g0133721 RchiOBHm_Chr2g0153921 RchiOBHm_Chr4g0396761 RchiOBHm_Chr4g0414291 RchiOBHm_Chr4g0429871 RchiOBHm_Chr4g0446211 RchiOBHm_Chr5g0057181 RchiOBHm_Chr5g0057391 RchiOBHm_Chr5g0077561 RchiOBHm_Chr6g0307121 RchiOBHm_Chr7g0197611
rosa_laevigata	RLG00000003922 RLG00000005681 RLG00000017313 RLG00000029149 RLG00000035152
rosa_multiflora	Rmu_co8043936.1_g000001 Rmu_sc0001164.1_g000009 Rmu_sc0001334.1_g000004 Rmu_sc0004952.1_g000011 Rmu_sc0013154.1_g000007 Rmu_sc0017650.1_g000006 Rmu_sc0018062.1_g000003
rosa_roxburghii	Rroxscaffold_1G00023030 Rroxscaffold_2G00094650 Rroxscaffold_3G00223000 Rroxscaffold_3G00232150 Rroxscaffold_3G00248030 Rroxscaffold_3G00248040 Rroxscaffold_3G00258320
rosa_rugosa	Rorug04G0184600 Rorug04G0368500 Rorug05G0306000 Rorug05G0307100 Rorug07G0041900
rosa_samantha	Rh2CG164400 Rh2DG389300 Rh3AG306800 Rh4AG430600 Rh4BG440000 Rh4CG457300 Rh4DG438500 Rh5AG375500 Rh5BG386300 Rh5CG409700 Rh5DG400300 Rh6CG481100 Rh7AG166300 Rh7AG360600 Rh7BG168400 Rh7CG174700 Rh7DG168000 Rh7DG387600
rosa_wichuraiana	Rw2G022790 Rw4G036780 Rw5G035320 Rw5G035460 Rw7G014480 Rw7G038030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	518
AciI	CCGC	1 cut(s)	78
AclWI	GGATC	2 cut(s)	353, 387
AcoI	YGGCCR	2 cut(s)	302, 465
AfaI	GTAC	3 cut(s)	159, 299, 451
AflIII	ACRYGT	1 cut(s)	11
AgsI	TTSAA	2 cut(s)	175, 512
AjiI	CACGTC	1 cut(s)	14
AjnI	CCWGG	3 cut(s)	56, 284, 323
AleI	CACNNNNGTG	1 cut(s)	58
AluBI	AGCT	2 cut(s)	337, 398
AluI	AGCT	2 cut(s)	337, 398
Alw26I	GTCTC	2 cut(s)	179, 294
AlwI	GGATC	2 cut(s)	353, 387
AoxI	GGCC	2 cut(s)	302, 465
ApeKI	GCWGC	1 cut(s)	398
ArsI	GACNNNNNNTTYG	2 cut(s)	355, 387
AsuHPI	GGTGA	2 cut(s)	58, 493
BalI	TGGCCA	1 cut(s)	467
BbsI	GAAGAC	1 cut(s)	258
BbvI	GCAGC	1 cut(s)	385
BccI	CCATC	2 cut(s)	28, 485
BceAI	ACGGC	1 cut(s)	289
BcgI	CGANNNNNNTGC	1 cut(s)	522
BciT130I	CCWGG	3 cut(s)	58, 286, 325
BcoDI	GTCTC	2 cut(s)	179, 294
BisI	GCNGC	1 cut(s)	399
BlsI	GCNGC	1 cut(s)	400
BmcAI	AGTACT	1 cut(s)	299
Bme1390I	CCNGG	3 cut(s)	58, 286, 325
BmgBI	CACGTC	1 cut(s)	14
BmrFI	CCNGG	3 cut(s)	58, 286, 325
BmsI	GCATC	1 cut(s)	424
BpiI	GAAGAC	1 cut(s)	258
BsaBI	GATNNNNATC	1 cut(s)	438
BsaI	GGTCTC	1 cut(s)	294
BsaJI	CCNNGG	3 cut(s)	56, 341, 416
Bse1I	ACTGG	1 cut(s)	305
Bse8I	GATNNNNATC	1 cut(s)	438
BseBI	CCWGG	3 cut(s)	58, 286, 325
BseDI	CCNNGG	3 cut(s)	56, 341, 416
BseGI	GGATG	1 cut(s)	234
BseJI	GATNNNNATC	1 cut(s)	438
BseNI	ACTGG	1 cut(s)	305
BseRI	GAGGAG	2 cut(s)	96, 105
BseXI	GCAGC	1 cut(s)	385
BshFI	GGCC	2 cut(s)	304, 467
BsmAI	GTCTC	2 cut(s)	179, 294
BsnI	GGCC	2 cut(s)	304, 467
Bso31I	GGTCTC	1 cut(s)	294
Bsp143I	GATC	6 cut(s)	69, 276, 345, 379, 424, 439
BspACI	CCGC	1 cut(s)	78
BspANI	GGCC	2 cut(s)	304, 467
BspHI	TCATGA	1 cut(s)	292
BspPI	GGATC	2 cut(s)	353, 387
BspTNI	GGTCTC	1 cut(s)	294
BsrI	ACTGG	1 cut(s)	305
BssECI	CCNNGG	3 cut(s)	56, 341, 416
BssMI	GATC	6 cut(s)	69, 276, 345, 379, 424, 439
Bst2UI	CCWGG	3 cut(s)	58, 286, 325
Bst4CI	ACNGT	3 cut(s)	46, 190, 242
Bst6I	CTCTTC	3 cut(s)	148, 381, 504
BstDEI	CTNAG	2 cut(s)	270, 443
BstDSI	CCRYGG	1 cut(s)	416
BstF5I	GGATG	1 cut(s)	234
BstKTI	GATC	6 cut(s)	72, 279, 348, 382, 427, 442
BstMAI	GTCTC	2 cut(s)	179, 294
BstMBI	GATC	6 cut(s)	69, 276, 345, 379, 424, 439
BstNI	CCWGG	3 cut(s)	58, 286, 325
BstSCI	CCNGG	3 cut(s)	56, 284, 323
BstV1I	GCAGC	1 cut(s)	385
BstV2I	GAAGAC	1 cut(s)	258
BstXI	CCANNNNNNTGG	1 cut(s)	60
BsuRI	GGCC	2 cut(s)	304, 467
BtgI	CCRYGG	1 cut(s)	416
BtrI	CACGTC	1 cut(s)	14
BtsCI	GGATG	1 cut(s)	234
BtsIMutI	CAGTG	2 cut(s)	195, 247
CciI	TCATGA	1 cut(s)	292
Csp6I	GTAC	3 cut(s)	158, 298, 450
CviAII	CATG	1 cut(s)	293
CviJI	RGCY	6 cut(s)	41, 304, 337, 398, 422, 467
CviKI_1	RGCY	6 cut(s)	41, 304, 337, 398, 422, 467
CviQI	GTAC	3 cut(s)	158, 298, 450
DdeI	CTNAG	2 cut(s)	270, 443
DpnI	GATC	6 cut(s)	71, 278, 347, 381, 426, 441
DpnII	GATC	6 cut(s)	69, 276, 345, 379, 424, 439
EaeI	YGGCCR	2 cut(s)	302, 465
Eam1104I	CTCTTC	3 cut(s)	148, 381, 504
EarI	CTCTTC	3 cut(s)	148, 381, 504
EciI	GGCGGA	1 cut(s)	93
Eco31I	GGTCTC	1 cut(s)	294
EcoRII	CCWGG	3 cut(s)	56, 284, 323
FaeI	CATG	1 cut(s)	296
FaiI	YATR	8 cut(s)	99, 163, 214, 260, 294, 368, 518, 531
FalI	AAGNNNNNCTT	2 cut(s)	511, 543
FatI	CATG	1 cut(s)	292
Fnu4HI	GCNGC	1 cut(s)	399
FokI	GGATG	1 cut(s)	241
Fsp4HI	GCNGC	1 cut(s)	399
GluI	GCNGC	1 cut(s)	399
HaeIII	GGCC	2 cut(s)	304, 467
Hin1II	CATG	1 cut(s)	296
HincII	GTYRAC	1 cut(s)	393
HindII	GTYRAC	1 cut(s)	393
HindIII	AAGCTT	1 cut(s)	335
HinfI	GANTC	3 cut(s)	49, 90, 232
HpaI	GTTAAC	1 cut(s)	393
HphI	GGTGA	2 cut(s)	58, 493
Hpy166II	GTNNAC	2 cut(s)	53, 393
Hpy188I	TCNGA	2 cut(s)	342, 433
Hpy188III	TCNNGA	3 cut(s)	236, 293, 383
Hpy8I	GTNNAC	2 cut(s)	53, 393
Hpy99I	CGWCG	1 cut(s)	18
HpyAV	CCTTC	2 cut(s)	12, 16
HpyCH4III	ACNGT	3 cut(s)	46, 190, 242
HpyCH4IV	ACGT	1 cut(s)	13
HpyCH4V	TGCA	1 cut(s)	533
HpyF3I	CTNAG	2 cut(s)	270, 443
HpySE526I	ACGT	1 cut(s)	13
Hsp92II	CATG	1 cut(s)	296
KspAI	GTTAAC	1 cut(s)	393
Kzo9I	GATC	6 cut(s)	69, 276, 345, 379, 424, 439
LpnPI	CCDG	9 cut(s)	43, 70, 221, 271, 286, 298, 310, 337, 519
Lsp1109I	GCAGC	1 cut(s)	385
LweI	GCATC	1 cut(s)	424
MaeII	ACGT	1 cut(s)	13
MaeIII	GTNAC	1 cut(s)	472
MalI	GATC	6 cut(s)	71, 278, 347, 381, 426, 441
MboI	GATC	6 cut(s)	69, 276, 345, 379, 424, 439
MboII	GAAGA	8 cut(s)	40, 43, 135, 187, 190, 258, 398, 491
MlsI	TGGCCA	1 cut(s)	467
MluCI	AATT	2 cut(s)	363, 512
MluNI	TGGCCA	1 cut(s)	467
MlyI	GAGTC	1 cut(s)	58
MmeI	TCCRAC	1 cut(s)	45
MnlI	CCTC	7 cut(s)	74, 104, 126, 130, 210, 336, 419
Mox20I	TGGCCA	1 cut(s)	467
MscI	TGGCCA	1 cut(s)	467
MseI	TTAA	2 cut(s)	392, 550
MslI	CAYNNNNRTG	1 cut(s)	58
Msp20I	TGGCCA	1 cut(s)	467
MspA1I	CMGCKG	1 cut(s)	398
MspR9I	CCNGG	3 cut(s)	58, 286, 325
MvaI	CCWGG	3 cut(s)	58, 286, 325
NdeII	GATC	6 cut(s)	69, 276, 345, 379, 424, 439
NlaIII	CATG	1 cut(s)	296
NmuCI	GTSAC	1 cut(s)	472
OliI	CACNNNNGTG	1 cut(s)	58
PagI	TCATGA	1 cut(s)	292
PfeI	GAWTC	2 cut(s)	90, 232
PkrI	GCNGC	1 cut(s)	400
PleI	GAGTC	1 cut(s)	57
PpsI	GAGTC	1 cut(s)	57
PsiI	TTATAA	1 cut(s)	518
Psp6I	CCWGG	3 cut(s)	56, 284, 323
PspGI	CCWGG	3 cut(s)	56, 284, 323
PvuII	CAGCTG	1 cut(s)	398
RsaI	GTAC	3 cut(s)	159, 299, 451
RsaNI	GTAC	3 cut(s)	158, 298, 450
RseI	CAYNNNNRTG	1 cut(s)	58
SaqAI	TTAA	2 cut(s)	392, 550
SatI	GCNGC	1 cut(s)	399
Sau3AI	GATC	6 cut(s)	69, 276, 345, 379, 424, 439
ScaI	AGTACT	1 cut(s)	299
SchI	GAGTC	1 cut(s)	58
ScrFI	CCNGG	3 cut(s)	58, 286, 325
SetI	ASST	7 cut(s)	16, 221, 290, 339, 356, 400, 483
SfaNI	GCATC	1 cut(s)	424
SmiMI	CAYNNNNRTG	1 cut(s)	58
Sse9I	AATT	2 cut(s)	363, 512
SsiI	CCGC	1 cut(s)	78
StyD4I	CCNGG	3 cut(s)	56, 284, 323
TaaI	ACNGT	3 cut(s)	46, 190, 242
TaiI	ACGT	1 cut(s)	16
TaqI	TCGA	2 cut(s)	16, 373
TasI	AATT	2 cut(s)	363, 512
TatI	WGTACW	2 cut(s)	157, 297
TfiI	GAWTC	2 cut(s)	90, 232
Tru1I	TTAA	2 cut(s)	392, 550
Tru9I	TTAA	2 cut(s)	392, 550
TscAI	CASTG	2 cut(s)	195, 247
TseFI	GTSAC	1 cut(s)	472
TseI	GCWGC	1 cut(s)	398
Tsp45I	GTSAC	1 cut(s)	472
TspDTI	ATGAA	1 cut(s)	245
TspGWI	ACGGA	1 cut(s)	392
TspRI	CASTG	2 cut(s)	195, 247
ZrmI	AGTACT	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.