Rh2CG164400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000649
Physical Location & Seq
Reverse (-)
14720679 .. 14724526
3848 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG164400.1

Sequence Viewer

Length: 369 bp
ATGGGAAGGCCAGCTGCTGCGATTGGAGAGAGCAAGGCCTGCACCGGGACGCTGCCCGGCATGTTCATCGGGACGCTGCCCGGCATGGTTCATCGGGACGCTGCCCGGCATGGTCATCGGAGACGCTGCTCCGGCATGTTGACTTTGACGTCATTGACACCAGAAGGTGCCGTTTTGAGGAGGGCCTGCAACAGAAAAGGAGAGGTGGTGGAGAGTGATGGAATAAGGTCTGAACCTTTTGTCTTCCAAGCTGCGGCTGCTTTCTCCTTCTTGTTTTCCCACGCTGCTATACTCTGTTGTGTCCTCCCCTGTTTTTCTTTTCATGTTAGCCCTTATATAGTGAGCACTAATGAAGGATTTGACTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.09

Weight (kDa)

8.66

Isoelectric Point (pI)

54.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000649)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33840
fragaria_vesca FvH4_2g00190 FvH4_4g18133 FvH4_4g36450 FvH4_5g02490 FvH4_5g35150 FvH4_6g35840
malus_domestica MD04G1034100.v1.1 MD06G1084100.v1.1
prunus_persica Prupe.2G139100_v2.0.a1 Prupe.5G096900_v2.0.a1 Prupe.5G096900_v2.0.a1 Prupe.5G100500_v2.0.a1 Prupe.5G100500_v2.0.a1 Prupe.5G100500_v2.0.a1
pyrus_communis pycom04g02850
rosa_chinensis RchiOBHm_Chr1g0324941 RchiOBHm_Chr1g0340751 RchiOBHm_Chr2g0133721 RchiOBHm_Chr2g0153921 RchiOBHm_Chr4g0396761 RchiOBHm_Chr4g0414291 RchiOBHm_Chr4g0429871 RchiOBHm_Chr4g0446211 RchiOBHm_Chr5g0057181 RchiOBHm_Chr5g0057391 RchiOBHm_Chr5g0077561 RchiOBHm_Chr6g0307121 RchiOBHm_Chr7g0197611
rosa_laevigata RLG00000003922 RLG00000005681 RLG00000017313 RLG00000029149 RLG00000035152
rosa_multiflora Rmu_co8043936.1_g000001 Rmu_sc0001164.1_g000009 Rmu_sc0001334.1_g000004 Rmu_sc0004952.1_g000011 Rmu_sc0013154.1_g000007 Rmu_sc0017650.1_g000006 Rmu_sc0018062.1_g000003
rosa_roxburghii Rroxscaffold_1G00023030 Rroxscaffold_2G00094650 Rroxscaffold_3G00223000 Rroxscaffold_3G00232150 Rroxscaffold_3G00248030 Rroxscaffold_3G00248040 Rroxscaffold_3G00258320
rosa_rugosa Rorug04G0184600 Rorug04G0368500 Rorug05G0306000 Rorug05G0307100 Rorug07G0041900
rosa_samantha Rh2CG164400 Rh2DG389300 Rh3AG306800 Rh4AG430600 Rh4BG440000 Rh4CG457300 Rh4DG438500 Rh5AG375500 Rh5BG386300 Rh5CG409700 Rh5DG400300 Rh6CG481100 Rh7AG166300 Rh7AG360600 Rh7BG168400 Rh7CG174700 Rh7DG168000 Rh7DG387600
rosa_wichuraiana Rw2G022790 Rw4G036780 Rw5G035320 Rw5G035460 Rw7G014480 Rw7G038030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 148
AatII GACGTC 1 cut(s) 152
AccB1I GGYRCC 1 cut(s) 167
AciI CCGC 1 cut(s) 254
AcyI GRCGYC 1 cut(s) 149
AfiI CCNNNNNNNGG 3 cut(s) 45, 177, 253
AluBI AGCT 2 cut(s) 14, 251
AluI AGCT 2 cut(s) 14, 251
Alw21I GWGCWC 1 cut(s) 347
Alw26I GTCTC 1 cut(s) 115
AlwNI CAGNNNCTG 1 cut(s) 17
AoxI GGCC 3 cut(s) 8, 36, 183
ApeKI GCWGC 9 cut(s) 14, 17, 52, 76, 101, 126, 251, 257, 284
AspS9I GGNCC 1 cut(s) 183
AsuC2I CCSGG 4 cut(s) 46, 57, 81, 106
BanI GGYRCC 1 cut(s) 167
BbsI GAAGAC 1 cut(s) 235
Bbv12I GWGCWC 1 cut(s) 347
BbvI GCAGC 8 cut(s) 4, 39, 63, 88, 113, 238, 244, 271
BccI CCATC 1 cut(s) 212
BceAI ACGGC 1 cut(s) 155
BcgI CGANNNNNNTGC 4 cut(s) 49, 83, 98, 132
BcnI CCSGG 4 cut(s) 46, 57, 81, 106
BcoDI GTCTC 1 cut(s) 115
Bme1390I CCNGG 4 cut(s) 46, 57, 81, 106
BmgT120I GGNCC 1 cut(s) 183
BmiI GGNNCC 1 cut(s) 169
BmrFI CCNGG 4 cut(s) 46, 57, 81, 106
BpiI GAAGAC 1 cut(s) 235
BpuMI CCSGG 4 cut(s) 46, 57, 81, 106
BsaHI GRCGYC 1 cut(s) 149
BsaXI ACNNNNNCTCC 2 cut(s) 192, 222
Bsc4I CCNNNNNNNGG 3 cut(s) 45, 177, 253
BseLI CCNNNNNNNGG 3 cut(s) 45, 177, 253
BseRI GAGGAG 1 cut(s) 193
BseXI GCAGC 8 cut(s) 4, 39, 63, 88, 113, 238, 244, 271
BsgI GTGCAG 1 cut(s) 25
BshFI GGCC 3 cut(s) 10, 38, 185
BshNI GGYRCC 1 cut(s) 167
BsiHKAI GWGCWC 1 cut(s) 347
BsiSI CCGG 5 cut(s) 45, 57, 81, 106, 132
BslFI GGGAC 3 cut(s) 61, 85, 110
BslI CCNNNNNNNGG 3 cut(s) 45, 177, 253
BsmAI GTCTC 1 cut(s) 115
BsmBI CGTCTC 1 cut(s) 115
BsmFI GGGAC 3 cut(s) 61, 85, 110
BsnI GGCC 3 cut(s) 10, 38, 185
Bsp1286I GDGCHC 1 cut(s) 347
BspACI CCGC 1 cut(s) 254
BspANI GGCC 3 cut(s) 10, 38, 185
BspLI GGNNCC 1 cut(s) 169
BspT107I GGYRCC 1 cut(s) 167
BssNI GRCGYC 1 cut(s) 149
BstACI GRCGYC 1 cut(s) 149
BstAPI GCANNNNNTGC 1 cut(s) 39
BstC8I GCNNGC 3 cut(s) 12, 40, 187
BstMAI GTCTC 1 cut(s) 115
BstMWI GCNNNNNNNGC 3 cut(s) 39, 132, 257
BstNSI RCATGY 2 cut(s) 64, 139
BstSCI CCNGG 4 cut(s) 44, 55, 79, 104
BstV1I GCAGC 8 cut(s) 4, 39, 63, 88, 113, 238, 244, 271
BstV2I GAAGAC 1 cut(s) 235
BsuRI GGCC 3 cut(s) 10, 38, 185
Cac8I GCNNGC 3 cut(s) 12, 40, 187
CaiI CAGNNNCTG 1 cut(s) 17
Cfr13I GGNCC 1 cut(s) 183
CseI GACGC 4 cut(s) 58, 82, 107, 132
CviAII CATG 5 cut(s) 61, 85, 110, 136, 323
CviJI RGCY 7 cut(s) 10, 14, 38, 185, 251, 257, 330
CviKI_1 RGCY 7 cut(s) 10, 14, 38, 185, 251, 257, 330
DrdI GACNNNNNNGTC 1 cut(s) 148
DseDI GACNNNNNNGTC 1 cut(s) 148
Eco147I AGGCCT 1 cut(s) 38
EcoO109I RGGNCCY 1 cut(s) 183
Esp3I CGTCTC 1 cut(s) 115
FaeI CATG 5 cut(s) 64, 88, 113, 139, 326
FaiI YATR 8 cut(s) 62, 86, 111, 137, 290, 324, 336, 338
FaqI GGGAC 3 cut(s) 61, 85, 110
FatI CATG 5 cut(s) 60, 84, 109, 135, 322
HaeIII GGCC 3 cut(s) 10, 38, 185
HapII CCGG 5 cut(s) 45, 57, 81, 106, 132
HgaI GACGC 4 cut(s) 58, 82, 107, 132
Hin1I GRCGYC 1 cut(s) 149
Hin1II CATG 5 cut(s) 64, 88, 113, 139, 326
HincII GTYRAC 1 cut(s) 141
HindII GTYRAC 1 cut(s) 141
HpaII CCGG 5 cut(s) 45, 57, 81, 106, 132
Hpy166II GTNNAC 1 cut(s) 141
Hpy188I TCNGA 2 cut(s) 120, 232
Hpy188III TCNNGA 2 cut(s) 70, 95
Hpy8I GTNNAC 1 cut(s) 141
HpyAV CCTTC 3 cut(s) 158, 277, 347
HpyCH4IV ACGT 1 cut(s) 149
HpyCH4V TGCA 2 cut(s) 42, 189
HpyF10VI GCNNNNNNNGC 3 cut(s) 39, 132, 257
HpySE526I ACGT 1 cut(s) 149
Hsp92I GRCGYC 1 cut(s) 149
Hsp92II CATG 5 cut(s) 64, 88, 113, 139, 326
LmnI GCTCC 1 cut(s) 134
Lsp1109I GCAGC 8 cut(s) 4, 39, 63, 88, 113, 238, 244, 271
MaeII ACGT 1 cut(s) 149
MboII GAAGA 1 cut(s) 235
MhlI GDGCHC 1 cut(s) 347
MnlI CCTC 4 cut(s) 171, 174, 196, 314
MspA1I CMGCKG 1 cut(s) 14
MspI CCGG 5 cut(s) 45, 57, 81, 106, 132
MspR9I CCNGG 4 cut(s) 46, 57, 81, 106
MwoI GCNNNNNNNGC 3 cut(s) 39, 132, 257
NciI CCSGG 4 cut(s) 46, 57, 81, 106
NlaIII CATG 5 cut(s) 64, 88, 113, 139, 326
NlaIV GGNNCC 1 cut(s) 169
NspI RCATGY 2 cut(s) 64, 139
PceI AGGCCT 1 cut(s) 38
PspN4I GGNNCC 1 cut(s) 169
PspPI GGNCC 1 cut(s) 183
PstNI CAGNNNCTG 1 cut(s) 17
PvuII CAGCTG 1 cut(s) 14
Sau96I GGNCC 1 cut(s) 183
ScrFI CCNGG 4 cut(s) 46, 57, 81, 106
SduI GDGCHC 1 cut(s) 347
SetI ASST 7 cut(s) 16, 152, 169, 207, 230, 238, 253
SseBI AGGCCT 1 cut(s) 38
SsiI CCGC 1 cut(s) 254
StuI AGGCCT 1 cut(s) 38
StyD4I CCNGG 4 cut(s) 44, 55, 79, 104
TaiI ACGT 1 cut(s) 152
TauI GCSGC 1 cut(s) 257
TseI GCWGC 9 cut(s) 14, 17, 52, 76, 101, 126, 251, 257, 284
TspDTI ATGAA 4 cut(s) 55, 80, 311, 366
XceI RCATGY 2 cut(s) 64, 139
ZraI GACGTC 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.