RchiOBHm_Chr2g0153921

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000649
Physical Location & Seq
Reverse (-)
71148596 .. 71151367
2772 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52298

Sequence Viewer

Length: 279 bp
ATGGTTCATCGGAGACGCTGCTCCGGCATGTTGTCTTTGACATCATTGACACCCGGAGGTGCCGTTGTGGGGAGAGCCTGCAACAGAAAAGAAAAGGTGGTGGAGAGCGATGGAATGAGGTCTGAACCTTTTGTCTTCCAAGCTCCTTTGCTGCTTTCTTCTTCTGCTTGTCCACCGCTACTGTGCTCCTTTGCGTCCTCCCCTTTTCTGCTCTTCATGTGGTGCTTATATACTGCACTCGAGATGAGTTTGGCTTGTATACAACATAGAGAGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

10.17

Weight (kDa)

8.66

Isoelectric Point (pI)

72.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000649)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33840
fragaria_vesca FvH4_2g00190 FvH4_4g18133 FvH4_4g36450 FvH4_5g02490 FvH4_5g35150 FvH4_6g35840
malus_domestica MD04G1034100.v1.1 MD06G1084100.v1.1
prunus_persica Prupe.2G139100_v2.0.a1 Prupe.5G096900_v2.0.a1 Prupe.5G096900_v2.0.a1 Prupe.5G100500_v2.0.a1 Prupe.5G100500_v2.0.a1 Prupe.5G100500_v2.0.a1
pyrus_communis pycom04g02850
rosa_chinensis RchiOBHm_Chr1g0324941 RchiOBHm_Chr1g0340751 RchiOBHm_Chr2g0133721 RchiOBHm_Chr2g0153921 RchiOBHm_Chr4g0396761 RchiOBHm_Chr4g0414291 RchiOBHm_Chr4g0429871 RchiOBHm_Chr4g0446211 RchiOBHm_Chr5g0057181 RchiOBHm_Chr5g0057391 RchiOBHm_Chr5g0077561 RchiOBHm_Chr6g0307121 RchiOBHm_Chr7g0197611
rosa_laevigata RLG00000003922 RLG00000005681 RLG00000017313 RLG00000029149 RLG00000035152
rosa_multiflora Rmu_co8043936.1_g000001 Rmu_sc0001164.1_g000009 Rmu_sc0001334.1_g000004 Rmu_sc0004952.1_g000011 Rmu_sc0013154.1_g000007 Rmu_sc0017650.1_g000006 Rmu_sc0018062.1_g000003
rosa_roxburghii Rroxscaffold_1G00023030 Rroxscaffold_2G00094650 Rroxscaffold_3G00223000 Rroxscaffold_3G00232150 Rroxscaffold_3G00248030 Rroxscaffold_3G00248040 Rroxscaffold_3G00258320
rosa_rugosa Rorug04G0184600 Rorug04G0368500 Rorug05G0306000 Rorug05G0307100 Rorug07G0041900
rosa_samantha Rh2CG164400 Rh2DG389300 Rh3AG306800 Rh4AG430600 Rh4BG440000 Rh4CG457300 Rh4DG438500 Rh5AG375500 Rh5BG386300 Rh5CG409700 Rh5DG400300 Rh6CG481100 Rh7AG166300 Rh7AG360600 Rh7BG168400 Rh7CG174700 Rh7DG168000 Rh7DG387600
rosa_wichuraiana Rw2G022790 Rw4G036780 Rw5G035320 Rw5G035460 Rw7G014480 Rw7G038030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 59
AccI GTMKAC 1 cut(s) 259
AciI CCGC 1 cut(s) 176
AfiI CCNNNNNNNGG 1 cut(s) 69
AluBI AGCT 1 cut(s) 143
AluI AGCT 1 cut(s) 143
Alw21I GWGCWC 1 cut(s) 188
Alw26I GTCTC 1 cut(s) 7
Ama87I CYCGRG 1 cut(s) 239
ApeKI GCWGC 2 cut(s) 18, 151
AsuC2I CCSGG 1 cut(s) 54
AvaI CYCGRG 1 cut(s) 239
BanI GGYRCC 1 cut(s) 59
BbsI GAAGAC 1 cut(s) 127
Bbv12I GWGCWC 1 cut(s) 188
BbvI GCAGC 2 cut(s) 5, 138
BccI CCATC 1 cut(s) 104
BceAI ACGGC 1 cut(s) 47
BcnI CCSGG 1 cut(s) 54
BcoDI GTCTC 1 cut(s) 7
BisI GCNGC 2 cut(s) 19, 152
BlsI GCNGC 2 cut(s) 20, 153
Bme1390I CCNGG 1 cut(s) 54
BmeT110I CYCGRG 1 cut(s) 239
BmiI GGNNCC 1 cut(s) 61
BmrFI CCNGG 1 cut(s) 54
BpiI GAAGAC 1 cut(s) 127
BpuMI CCSGG 1 cut(s) 54
BsaXI ACNNNNNCTCC 2 cut(s) 48, 78
Bsc4I CCNNNNNNNGG 1 cut(s) 69
BseLI CCNNNNNNNGG 1 cut(s) 69
BseXI GCAGC 2 cut(s) 5, 138
BsgI GTGCAG 1 cut(s) 219
BshNI GGYRCC 1 cut(s) 59
BsiHKAI GWGCWC 1 cut(s) 188
BsiHKCI CYCGRG 1 cut(s) 239
BsiSI CCGG 2 cut(s) 24, 54
BslI CCNNNNNNNGG 1 cut(s) 69
BsmAI GTCTC 1 cut(s) 7
BsmBI CGTCTC 1 cut(s) 7
BsoBI CYCGRG 1 cut(s) 239
Bsp1286I GDGCHC 1 cut(s) 188
BspACI CCGC 1 cut(s) 176
BspLI GGNNCC 1 cut(s) 61
BspQI GCTCTTC 1 cut(s) 218
BspT107I GGYRCC 1 cut(s) 59
BssNAI GTATAC 1 cut(s) 260
Bst1107I GTATAC 1 cut(s) 260
Bst4CI ACNGT 1 cut(s) 183
Bst6I CTCTTC 1 cut(s) 218
BstC8I GCNNGC 1 cut(s) 79
BstMAI GTCTC 1 cut(s) 7
BstMWI GCNNNNNNNGC 1 cut(s) 24
BstNSI RCATGY 1 cut(s) 31
BstSCI CCNGG 1 cut(s) 52
BstV1I GCAGC 2 cut(s) 5, 138
BstV2I GAAGAC 1 cut(s) 127
BstZ17I GTATAC 1 cut(s) 260
BtgZI GCGATG 1 cut(s) 123
Cac8I GCNNGC 1 cut(s) 79
CseI GACGC 2 cut(s) 24, 183
CviAII CATG 2 cut(s) 28, 217
CviJI RGCY 3 cut(s) 77, 143, 254
CviKI_1 RGCY 3 cut(s) 77, 143, 254
Eam1104I CTCTTC 1 cut(s) 218
EarI CTCTTC 1 cut(s) 218
Eco88I CYCGRG 1 cut(s) 239
Esp3I CGTCTC 1 cut(s) 7
FaeI CATG 2 cut(s) 31, 220
FaiI YATR 6 cut(s) 29, 218, 229, 231, 260, 267
FatI CATG 2 cut(s) 27, 216
FblI GTMKAC 1 cut(s) 259
Fnu4HI GCNGC 2 cut(s) 19, 152
Fsp4HI GCNGC 2 cut(s) 19, 152
GluI GCNGC 2 cut(s) 19, 152
HapII CCGG 2 cut(s) 24, 54
HgaI GACGC 2 cut(s) 24, 183
Hin1II CATG 2 cut(s) 31, 220
HpaII CCGG 2 cut(s) 24, 54
Hpy166II GTNNAC 2 cut(s) 173, 260
Hpy188I TCNGA 2 cut(s) 12, 124
Hpy188III TCNNGA 1 cut(s) 241
Hpy8I GTNNAC 2 cut(s) 173, 260
HpyCH4III ACNGT 1 cut(s) 183
HpyCH4V TGCA 2 cut(s) 81, 236
HpyF10VI GCNNNNNNNGC 1 cut(s) 24
Hsp92II CATG 2 cut(s) 31, 220
LguI GCTCTTC 1 cut(s) 218
LmnI GCTCC 3 cut(s) 26, 148, 191
LpnPI CCDG 3 cut(s) 37, 67, 91
Lsp1109I GCAGC 2 cut(s) 5, 138
MboII GAAGA 4 cut(s) 127, 150, 153, 205
MhlI GDGCHC 1 cut(s) 188
MnlI CCTC 3 cut(s) 50, 111, 208
MspI CCGG 2 cut(s) 24, 54
MspR9I CCNGG 1 cut(s) 54
MwoI GCNNNNNNNGC 1 cut(s) 24
NciI CCSGG 1 cut(s) 54
NlaIII CATG 2 cut(s) 31, 220
NlaIV GGNNCC 1 cut(s) 61
NspI RCATGY 1 cut(s) 31
PaeR7I CTCGAG 1 cut(s) 239
PciSI GCTCTTC 1 cut(s) 218
PkrI GCNGC 2 cut(s) 20, 153
PspN4I GGNNCC 1 cut(s) 61
SapI GCTCTTC 1 cut(s) 218
SatI GCNGC 2 cut(s) 19, 152
ScrFI CCNGG 1 cut(s) 54
SduI GDGCHC 1 cut(s) 188
SetI ASST 5 cut(s) 61, 99, 122, 130, 145
Sfr274I CTCGAG 1 cut(s) 239
SlaI CTCGAG 1 cut(s) 239
SmlI CTYRAG 1 cut(s) 239
SmoI CTYRAG 1 cut(s) 239
SsiI CCGC 1 cut(s) 176
StyD4I CCNGG 1 cut(s) 52
TaaI ACNGT 1 cut(s) 183
TaqI TCGA 1 cut(s) 240
TseI GCWGC 2 cut(s) 18, 151
TspDTI ATGAA 1 cut(s) 205
XceI RCATGY 1 cut(s) 31
XhoI CTCGAG 1 cut(s) 239
XmiI GTMKAC 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.