Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0000649

Physical Location & Seq

Genomic Coordinates Reverse (-)

32654391 .. 32661116

Gene Structure 6726 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G022790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGGGATGAATCTAGACAGTGGGAAAGTTGAGTTTTTGTGGTCTTCTAAGGAGATCAATGCCAGGTCACATGAGTACTGGCCGCGTGTAATGGATATTGCCAGGAAAAACAAGCTTCCGAGGATCATTAGGTGTAGTCAAATTATGGGTTTTACTGATCAAGAAGAGTTAACAGCTACCCAGATCCTCTACCCGTGTATGCAATGTGCAGATATTTTCTTCCTGCAGGCTGACATTTGTCAACTCAGTATGGATCAACGTAAACTGAATGTGCTTGCACGAGAGTACTGTGATGACATCAAGAAGAAAAACAAACTCATTATCTTGTCACACCTTTTTCCTTTCTTTTCTTTGAGACAGGGGATTGAAAAGAAAACAAGGAGAAGAACTAAGGTTGTTTCCAATTTGGGTTCGGGAAGGTTTTTAGATTCTCTTTTAAAAGTTTTGCTTGTTCTCAGCCCGACTGTATTGAGTTATGTCTCCATTCCTTGGTCCACTCATGTGTTAGTGGCAAGGTTGAATTGGGCTTCCACTAGGCCCGAGGATACGAAATCAGTTTTTTATAAATCAAACGATGTCCATATTAACTCCTCACCAAGATCGTTGTCATCGGACTTCGAGACCCCATCTAGGGTGAAAACTCGATACCTGAAATCGGCCCACCCGACATACAACCTATCTCGTGGTGATTGGAAGCGGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004812 GO:0004831 GO:0005488 GO:0005515 GO:0005524 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006437 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016597 GO:0016874 GO:0016875 GO:0017076 GO:0019538 GO:0019752 GO:0030554 GO:0031406 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034645 GO:0034660 GO:0035639 GO:0036094 GO:0042802 GO:0042803 GO:0043038 GO:0043039 GO:0043043 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043177 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0046483 GO:0046983 GO:0071704 GO:0072545 GO:0090304 GO:0097159 GO:0097367 GO:0140098 GO:0140101 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_1b

Protein Analysis

234

Amino Acids

27.18

Weight (kDa)

9.79

Isoelectric Point (pI)

44.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1b	PF00579	4 - 111	3.5e-16	tRNA synthetases class I (W and Y)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33840
fragaria_vesca	FvH4_2g00190 FvH4_4g18133 FvH4_4g36450 FvH4_5g02490 FvH4_5g35150 FvH4_6g35840
malus_domestica	MD04G1034100.v1.1 MD06G1084100.v1.1
prunus_persica	Prupe.2G139100_v2.0.a1 Prupe.5G096900_v2.0.a1 Prupe.5G096900_v2.0.a1 Prupe.5G100500_v2.0.a1 Prupe.5G100500_v2.0.a1 Prupe.5G100500_v2.0.a1
pyrus_communis	pycom04g02850
rosa_chinensis	RchiOBHm_Chr1g0324941 RchiOBHm_Chr1g0340751 RchiOBHm_Chr2g0133721 RchiOBHm_Chr2g0153921 RchiOBHm_Chr4g0396761 RchiOBHm_Chr4g0414291 RchiOBHm_Chr4g0429871 RchiOBHm_Chr4g0446211 RchiOBHm_Chr5g0057181 RchiOBHm_Chr5g0057391 RchiOBHm_Chr5g0077561 RchiOBHm_Chr6g0307121 RchiOBHm_Chr7g0197611
rosa_laevigata	RLG00000003922 RLG00000005681 RLG00000017313 RLG00000029149 RLG00000035152
rosa_multiflora	Rmu_co8043936.1_g000001 Rmu_sc0001164.1_g000009 Rmu_sc0001334.1_g000004 Rmu_sc0004952.1_g000011 Rmu_sc0013154.1_g000007 Rmu_sc0017650.1_g000006 Rmu_sc0018062.1_g000003
rosa_roxburghii	Rroxscaffold_1G00023030 Rroxscaffold_2G00094650 Rroxscaffold_3G00223000 Rroxscaffold_3G00232150 Rroxscaffold_3G00248030 Rroxscaffold_3G00248040 Rroxscaffold_3G00258320
rosa_rugosa	Rorug04G0184600 Rorug04G0368500 Rorug05G0306000 Rorug05G0307100 Rorug07G0041900
rosa_samantha	Rh2CG164400 Rh2DG389300 Rh3AG306800 Rh4AG430600 Rh4BG440000 Rh4CG457300 Rh4DG438500 Rh5AG375500 Rh5BG386300 Rh5CG409700 Rh5DG400300 Rh6CG481100 Rh7AG166300 Rh7AG360600 Rh7BG168400 Rh7CG174700 Rh7DG168000 Rh7DG387600
rosa_wichuraiana	Rw2G022790 Rw4G036780 Rw5G035320 Rw5G035460 Rw7G014480 Rw7G038030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	564
AccB7I	CCANNNNNTGG	1 cut(s)	489
AccII	CGCG	1 cut(s)	85
AciI	CCGC	2 cut(s)	83, 697
AclWI	GGATC	3 cut(s)	131, 178, 261
AcoI	YGGCCR	1 cut(s)	80
AfaI	GTAC	2 cut(s)	77, 287
AfiI	CCNNNNNNNGG	4 cut(s)	489, 630, 631, 655
AgsI	TTSAA	2 cut(s)	368, 520
AjnI	CCWGG	2 cut(s)	62, 101
AleI	CACNNNNGTG	1 cut(s)	500
AluBI	AGCT	2 cut(s)	115, 176
AluI	AGCT	2 cut(s)	115, 176
Alw26I	GTCTC	3 cut(s)	349, 484, 614
AlwI	GGATC	3 cut(s)	131, 178, 261
Ama87I	CYCGRG	1 cut(s)	539
AoxI	GGCC	3 cut(s)	80, 536, 657
AspS9I	GGNCC	3 cut(s)	492, 537, 658
AsuHPI	GGTGA	3 cut(s)	585, 646, 698
AvaI	CYCGRG	1 cut(s)	539
AvaII	GGWCC	1 cut(s)	492
BauI	CACGAG	2 cut(s)	279, 681
BbsI	GAAGAC	1 cut(s)	36
BccI	CCATC	1 cut(s)	634
BciT130I	CCWGG	2 cut(s)	64, 103
BciVI	GTATCC	1 cut(s)	538
BclI	TGATCA	1 cut(s)	157
BcoDI	GTCTC	3 cut(s)	349, 484, 614
BfaI	CTAG	3 cut(s)	14, 534, 630
BfmI	CTRYAG	1 cut(s)	224
BfuI	GTATCC	1 cut(s)	538
BisI	GCNGC	2 cut(s)	83, 698
BlsI	GCNGC	2 cut(s)	84, 699
BmcAI	AGTACT	2 cut(s)	77, 287
Bme1390I	CCNGG	2 cut(s)	64, 103
Bme18I	GGWCC	1 cut(s)	492
BmeT110I	CYCGRG	1 cut(s)	539
BmgT120I	GGNCC	3 cut(s)	492, 537, 658
BmrFI	CCNGG	2 cut(s)	64, 103
BoxI	GACNNNNGTC	1 cut(s)	237
BpiI	GAAGAC	1 cut(s)	36
BsaI	GGTCTC	1 cut(s)	614
BsaJI	CCNNGG	3 cut(s)	119, 488, 540
Bsc4I	CCNNNNNNNGG	4 cut(s)	489, 630, 631, 655
Bse1I	ACTGG	1 cut(s)	83
Bse3DI	GCAATG	1 cut(s)	209
BseBI	CCWGG	2 cut(s)	64, 103
BseDI	CCNNGG	3 cut(s)	119, 488, 540
BseGI	GGATG	1 cut(s)	12
BseLI	CCNNNNNNNGG	4 cut(s)	489, 630, 631, 655
BseMI	GCAATG	1 cut(s)	209
BseMII	CTCAG	2 cut(s)	259, 469
BseNI	ACTGG	1 cut(s)	83
BseRI	GAGGAG	1 cut(s)	580
BsgI	GTGCAG	1 cut(s)	228
Bsh1236I	CGCG	1 cut(s)	85
BshFI	GGCC	3 cut(s)	82, 538, 659
BsiHKCI	CYCGRG	1 cut(s)	539
BslI	CCNNNNNNNGG	4 cut(s)	489, 630, 631, 655
BsmAI	GTCTC	3 cut(s)	349, 484, 614
BsnI	GGCC	3 cut(s)	82, 538, 659
Bso31I	GGTCTC	1 cut(s)	614
BsoBI	CYCGRG	1 cut(s)	539
Bsp143I	GATC	6 cut(s)	54, 123, 157, 183, 253, 599
BspACI	CCGC	2 cut(s)	83, 697
BspANI	GGCC	3 cut(s)	82, 538, 659
BspCNI	CTCAG	2 cut(s)	258, 468
BspFNI	CGCG	1 cut(s)	85
BspMAI	CTGCAG	1 cut(s)	228
BspPI	GGATC	3 cut(s)	131, 178, 261
BspTNI	GGTCTC	1 cut(s)	614
BsrDI	GCAATG	1 cut(s)	209
BsrI	ACTGG	1 cut(s)	83
BssECI	CCNNGG	3 cut(s)	119, 488, 540
BssMI	GATC	6 cut(s)	54, 123, 157, 183, 253, 599
BssSI	CACGAG	2 cut(s)	279, 681
BssT1I	CCWWGG	1 cut(s)	488
Bst2BI	CACGAG	2 cut(s)	279, 681
Bst2UI	CCWGG	2 cut(s)	64, 103
Bst4CI	ACNGT	3 cut(s)	20, 290, 466
Bst6I	CTCTTC	1 cut(s)	159
BstC8I	GCNNGC	2 cut(s)	228, 276
BstDEI	CTNAG	4 cut(s)	48, 245, 390, 455
BstF5I	GGATG	1 cut(s)	12
BstFNI	CGCG	1 cut(s)	85
BstKTI	GATC	6 cut(s)	57, 126, 160, 186, 256, 602
BstMAI	GTCTC	3 cut(s)	349, 484, 614
BstMBI	GATC	6 cut(s)	54, 123, 157, 183, 253, 599
BstNI	CCWGG	2 cut(s)	64, 103
BstPAI	GACNNNNGTC	1 cut(s)	237
BstSCI	CCNGG	2 cut(s)	62, 101
BstSFI	CTRYAG	1 cut(s)	224
BstUI	CGCG	1 cut(s)	85
BstV2I	GAAGAC	1 cut(s)	36
BstX2I	RGATCY	1 cut(s)	183
BstYI	RGATCY	1 cut(s)	183
BsuI	GTATCC	1 cut(s)	538
BsuRI	GGCC	3 cut(s)	82, 538, 659
BtsCI	GGATG	1 cut(s)	12
BtsIMutI	CAGTG	1 cut(s)	25
Cac8I	GCNNGC	2 cut(s)	228, 276
Cfr13I	GGNCC	3 cut(s)	492, 537, 658
Csp6I	GTAC	2 cut(s)	76, 286
CviAII	CATG	2 cut(s)	71, 500
CviJI	RGCY	8 cut(s)	82, 115, 176, 230, 459, 527, 538, 659
CviKI_1	RGCY	8 cut(s)	82, 115, 176, 230, 459, 527, 538, 659
CviQI	GTAC	2 cut(s)	76, 286
DdeI	CTNAG	4 cut(s)	48, 245, 390, 455
DpnI	GATC	6 cut(s)	56, 125, 159, 185, 255, 601
DpnII	GATC	6 cut(s)	54, 123, 157, 183, 253, 599
DraI	TTTAAA	1 cut(s)	438
EaeI	YGGCCR	1 cut(s)	80
Eam1104I	CTCTTC	1 cut(s)	159
EarI	CTCTTC	1 cut(s)	159
Eco130I	CCWWGG	1 cut(s)	488
Eco31I	GGTCTC	1 cut(s)	614
Eco47I	GGWCC	1 cut(s)	492
Eco88I	CYCGRG	1 cut(s)	539
EcoRII	CCWGG	2 cut(s)	62, 101
EcoT14I	CCWWGG	1 cut(s)	488
ErhI	CCWWGG	1 cut(s)	488
FaeI	CATG	2 cut(s)	74, 503
FaiI	YATR	9 cut(s)	72, 146, 200, 251, 477, 501, 564, 582, 670
FalI	AAGNNNNNCTT	2 cut(s)	432, 464
FatI	CATG	2 cut(s)	70, 499
FbaI	TGATCA	1 cut(s)	157
Fnu4HI	GCNGC	2 cut(s)	83, 698
FokI	GGATG	1 cut(s)	19
Fsp4HI	GCNGC	2 cut(s)	83, 698
FspBI	CTAG	3 cut(s)	14, 534, 630
GluI	GCNGC	2 cut(s)	83, 698
HaeIII	GGCC	3 cut(s)	82, 538, 659
Hin1II	CATG	2 cut(s)	74, 503
HincII	GTYRAC	2 cut(s)	171, 242
HindII	GTYRAC	2 cut(s)	171, 242
HindIII	AAGCTT	1 cut(s)	113
HinfI	GANTC	2 cut(s)	10, 428
HpaI	GTTAAC	1 cut(s)	171
HphI	GGTGA	3 cut(s)	585, 646, 698
Hpy166II	GTNNAC	4 cut(s)	171, 242, 263, 495
Hpy188I	TCNGA	2 cut(s)	120, 613
Hpy188III	TCNNGA	5 cut(s)	14, 161, 301, 414, 619
Hpy8I	GTNNAC	4 cut(s)	171, 242, 263, 495
HpyAV	CCTTC	1 cut(s)	411
HpyCH4III	ACNGT	3 cut(s)	20, 290, 466
HpyCH4IV	ACGT	1 cut(s)	259
HpyCH4V	TGCA	4 cut(s)	202, 209, 226, 278
HpyF3I	CTNAG	4 cut(s)	48, 245, 390, 455
HpySE526I	ACGT	1 cut(s)	259
Hsp92II	CATG	2 cut(s)	74, 503
Ksp22I	TGATCA	1 cut(s)	157
KspAI	GTTAAC	1 cut(s)	171
Kzo9I	GATC	6 cut(s)	54, 123, 157, 183, 253, 599
MaeI	CTAG	3 cut(s)	14, 534, 630
MaeII	ACGT	1 cut(s)	259
MaeIII	GTNAC	2 cut(s)	66, 327
MalI	GATC	6 cut(s)	56, 125, 159, 185, 255, 601
MboI	GATC	6 cut(s)	54, 123, 157, 183, 253, 599
MboII	GAAGA	5 cut(s)	36, 176, 211, 316, 396
MflI	RGATCY	1 cut(s)	183
MluCI	AATT	3 cut(s)	141, 403, 520
MnlI	CCTC	4 cut(s)	114, 197, 535, 601
MseI	TTAA	3 cut(s)	170, 437, 585
MslI	CAYNNNNRTG	1 cut(s)	500
MspR9I	CCNGG	2 cut(s)	64, 103
MvaI	CCWGG	2 cut(s)	64, 103
MvnI	CGCG	1 cut(s)	85
NdeII	GATC	6 cut(s)	54, 123, 157, 183, 253, 599
NlaIII	CATG	2 cut(s)	74, 503
NmuCI	GTSAC	2 cut(s)	66, 327
OliI	CACNNNNGTG	1 cut(s)	500
PcsI	WCGNNNNNNNCGW	1 cut(s)	662
PfeI	GAWTC	2 cut(s)	10, 428
PflMI	CCANNNNNTGG	1 cut(s)	489
PkrI	GCNGC	2 cut(s)	84, 699
PshAI	GACNNNNGTC	1 cut(s)	237
PsiI	TTATAA	1 cut(s)	564
Psp6I	CCWGG	2 cut(s)	62, 101
PspGI	CCWGG	2 cut(s)	62, 101
PspPI	GGNCC	3 cut(s)	492, 537, 658
PstI	CTGCAG	1 cut(s)	228
PsuI	RGATCY	1 cut(s)	183
RsaI	GTAC	2 cut(s)	77, 287
RsaNI	GTAC	2 cut(s)	76, 286
RseI	CAYNNNNRTG	1 cut(s)	500
SaqAI	TTAA	3 cut(s)	170, 437, 585
SatI	GCNGC	2 cut(s)	83, 698
Sau3AI	GATC	6 cut(s)	54, 123, 157, 183, 253, 599
Sau96I	GGNCC	3 cut(s)	492, 537, 658
SbfI	CCTGCAGG	1 cut(s)	228
ScaI	AGTACT	2 cut(s)	77, 287
ScrFI	CCNGG	2 cut(s)	64, 103
SdaI	CCTGCAGG	1 cut(s)	228
SfcI	CTRYAG	1 cut(s)	224
SinI	GGWCC	1 cut(s)	492
SmiMI	CAYNNNNRTG	1 cut(s)	500
Sse8387I	CCTGCAGG	1 cut(s)	228
Sse9I	AATT	3 cut(s)	141, 403, 520
SsiI	CCGC	2 cut(s)	83, 697
SspMI	CTAG	3 cut(s)	14, 534, 630
StyD4I	CCNGG	2 cut(s)	62, 101
StyI	CCWWGG	1 cut(s)	488
TaaI	ACNGT	3 cut(s)	20, 290, 466
TaiI	ACGT	1 cut(s)	262
TaqI	TCGA	2 cut(s)	618, 643
TasI	AATT	3 cut(s)	141, 403, 520
TatI	WGTACW	2 cut(s)	75, 285
TauI	GCSGC	2 cut(s)	85, 700
TfiI	GAWTC	2 cut(s)	10, 428
Tru1I	TTAA	3 cut(s)	170, 437, 585
Tru9I	TTAA	3 cut(s)	170, 437, 585
TscAI	CASTG	1 cut(s)	25
TseFI	GTSAC	2 cut(s)	66, 327
Tsp45I	GTSAC	2 cut(s)	66, 327
TspDTI	ATGAA	1 cut(s)	23
TspRI	CASTG	1 cut(s)	25
Van91I	CCANNNNNTGG	1 cut(s)	489
VpaK11BI	GGWCC	1 cut(s)	492
XbaI	TCTAGA	1 cut(s)	13
XspI	CTAG	3 cut(s)	14, 534, 630
ZrmI	AGTACT	2 cut(s)	77, 287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.