Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000649

Physical Location & Seq

Genomic Coordinates Reverse (-)

41346182 .. 41350048

Gene Structure 3867 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00248030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGAGGTCCGTGGGGATGAATCGGAAAGTGGGAAAGTTGAGTTTTTGTGGTCTTCTAAGGAGATCAATTCCGAGCTCGGCCACCGTTTTACAAGCAACTCGACCGGGTTCCAGCTCTCTCTCCAATGGCAACCGAAGTACGGAGCAAGTCCCTGCCGACGAAATCAAATCGATGTCGATCGCCGACTCGAGTCGCAAGACCAGCCCGCAAGCTCGTCCGGTCCATCCGTCCAATTGAGTCCGGATGAGAGGTACAACCTGCTTAGGAGCATCACGGAGGAGTGTATCCTAGAAGAAGAGCTCAAGAATTTATCGGATAAGAAGACCGAGCCGATCCGCTACGATGGCTTTGAGCCTCCGGTAGAATGCATATTGCTCAAGGAGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004812 GO:0004831 GO:0005488 GO:0005515 GO:0005524 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006437 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016597 GO:0016874 GO:0016875 GO:0017076 GO:0019538 GO:0019752 GO:0030554 GO:0031406 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034645 GO:0034660 GO:0035639 GO:0036094 GO:0042802 GO:0042803 GO:0043038 GO:0043039 GO:0043043 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043177 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0046483 GO:0046983 GO:0071704 GO:0072545 GO:0090304 GO:0097159 GO:0097367 GO:0140098 GO:0140101 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_1b

Protein Analysis

129

Amino Acids

14.81

Weight (kDa)

4.74

Isoelectric Point (pI)

75.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33840
fragaria_vesca	FvH4_2g00190 FvH4_4g18133 FvH4_4g36450 FvH4_5g02490 FvH4_5g35150 FvH4_6g35840
malus_domestica	MD04G1034100.v1.1 MD06G1084100.v1.1
prunus_persica	Prupe.2G139100_v2.0.a1 Prupe.5G096900_v2.0.a1 Prupe.5G096900_v2.0.a1 Prupe.5G100500_v2.0.a1 Prupe.5G100500_v2.0.a1 Prupe.5G100500_v2.0.a1
pyrus_communis	pycom04g02850
rosa_chinensis	RchiOBHm_Chr1g0324941 RchiOBHm_Chr1g0340751 RchiOBHm_Chr2g0133721 RchiOBHm_Chr2g0153921 RchiOBHm_Chr4g0396761 RchiOBHm_Chr4g0414291 RchiOBHm_Chr4g0429871 RchiOBHm_Chr4g0446211 RchiOBHm_Chr5g0057181 RchiOBHm_Chr5g0057391 RchiOBHm_Chr5g0077561 RchiOBHm_Chr6g0307121 RchiOBHm_Chr7g0197611
rosa_laevigata	RLG00000003922 RLG00000005681 RLG00000017313 RLG00000029149 RLG00000035152
rosa_multiflora	Rmu_co8043936.1_g000001 Rmu_sc0001164.1_g000009 Rmu_sc0001334.1_g000004 Rmu_sc0004952.1_g000011 Rmu_sc0013154.1_g000007 Rmu_sc0017650.1_g000006 Rmu_sc0018062.1_g000003
rosa_roxburghii	Rroxscaffold_1G00023030 Rroxscaffold_2G00094650 Rroxscaffold_3G00223000 Rroxscaffold_3G00232150 Rroxscaffold_3G00248030 Rroxscaffold_3G00248040 Rroxscaffold_3G00258320
rosa_rugosa	Rorug04G0184600 Rorug04G0368500 Rorug05G0306000 Rorug05G0307100 Rorug07G0041900
rosa_samantha	Rh2CG164400 Rh2DG389300 Rh3AG306800 Rh4AG430600 Rh4BG440000 Rh4CG457300 Rh4DG438500 Rh5AG375500 Rh5BG386300 Rh5CG409700 Rh5DG400300 Rh6CG481100 Rh7AG166300 Rh7AG360600 Rh7BG168400 Rh7CG174700 Rh7DG168000 Rh7DG387600
rosa_wichuraiana	Rw2G022790 Rw4G036780 Rw5G035320 Rw5G035460 Rw7G014480 Rw7G038030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	267
AccIII	TCCGGA	1 cut(s)	241
AciI	CCGC	2 cut(s)	207, 337
AclWI	GGATC	1 cut(s)	328
AcoI	YGGCCR	1 cut(s)	79
AcsI	RAATTY	1 cut(s)	307
AfaI	GTAC	2 cut(s)	140, 254
AfiI	CCNNNNNNNGG	1 cut(s)	140
AluBI	AGCT	4 cut(s)	76, 115, 213, 301
AluI	AGCT	4 cut(s)	76, 115, 213, 301
Alw21I	GWGCWC	2 cut(s)	78, 303
AlwI	GGATC	1 cut(s)	328
Ama87I	CYCGRG	1 cut(s)	188
Aor13HI	TCCGGA	1 cut(s)	241
AoxI	GGCC	1 cut(s)	79
ApoI	RAATTY	1 cut(s)	307
AspS9I	GGNCC	2 cut(s)	7, 221
AsuC2I	CCSGG	1 cut(s)	106
AvaI	CYCGRG	1 cut(s)	188
AvaII	GGWCC	2 cut(s)	7, 221
BanII	GRGCYC	2 cut(s)	78, 303
BbsI	GAAGAC	2 cut(s)	45, 329
Bbv12I	GWGCWC	2 cut(s)	78, 303
BccI	CCATC	2 cut(s)	232, 338
BciVI	GTATCC	1 cut(s)	296
BcnI	CCSGG	1 cut(s)	106
BfaI	CTAG	1 cut(s)	290
BfuAI	ACCTGC	1 cut(s)	267
BfuI	GTATCC	1 cut(s)	296
Bme1390I	CCNGG	1 cut(s)	106
Bme18I	GGWCC	2 cut(s)	7, 221
BmeT110I	CYCGRG	1 cut(s)	188
BmgT120I	GGNCC	2 cut(s)	7, 221
BmiI	GGNNCC	1 cut(s)	110
BmrFI	CCNGG	1 cut(s)	106
BmsI	GCATC	1 cut(s)	279
BoxI	GACNNNNGTC	1 cut(s)	190
BpiI	GAAGAC	2 cut(s)	45, 329
Bpu10I	CCTNAGC	1 cut(s)	263
BpuEI	CTTGAG	2 cut(s)	287, 362
BpuMI	CCSGG	1 cut(s)	106
Bsa29I	ATCGAT	1 cut(s)	171
BsaBI	GATNNNNATC	1 cut(s)	177
BsaJI	CCNNGG	1 cut(s)	10
BsaWI	WCCGGW	3 cut(s)	218, 241, 358
Bsc4I	CCNNNNNNNGG	1 cut(s)	140
Bse8I	GATNNNNATC	1 cut(s)	177
BseAI	TCCGGA	1 cut(s)	241
BseCI	ATCGAT	1 cut(s)	171
BseDI	CCNNGG	1 cut(s)	10
BseGI	GGATG	3 cut(s)	22, 224, 250
BseJI	GATNNNNATC	1 cut(s)	177
BseLI	CCNNNNNNNGG	1 cut(s)	140
BseRI	GAGGAG	1 cut(s)	293
Bsh1285I	CGRYCG	2 cut(s)	105, 181
BshFI	GGCC	1 cut(s)	81
BshVI	ATCGAT	1 cut(s)	171
BsiEI	CGRYCG	2 cut(s)	105, 181
BsiHKAI	GWGCWC	2 cut(s)	78, 303
BsiHKCI	CYCGRG	1 cut(s)	188
BsiSI	CCGG	4 cut(s)	105, 219, 242, 359
BslFI	GGGAC	1 cut(s)	135
BslI	CCNNNNNNNGG	1 cut(s)	140
BsmFI	GGGAC	1 cut(s)	135
BsmI	GAATGC	1 cut(s)	371
BsnI	GGCC	1 cut(s)	81
BsoBI	CYCGRG	1 cut(s)	188
Bsp1286I	GDGCHC	2 cut(s)	78, 303
Bsp13I	TCCGGA	1 cut(s)	241
Bsp143I	GATC	3 cut(s)	63, 178, 333
BspACI	CCGC	2 cut(s)	207, 337
BspANI	GGCC	1 cut(s)	81
BspDI	ATCGAT	1 cut(s)	171
BspEI	TCCGGA	1 cut(s)	241
BspLI	GGNNCC	1 cut(s)	110
BspMI	ACCTGC	1 cut(s)	267
BspPI	GGATC	1 cut(s)	328
BspQI	GCTCTTC	1 cut(s)	291
BssECI	CCNNGG	1 cut(s)	10
BssMI	GATC	3 cut(s)	63, 178, 333
Bst4CI	ACNGT	1 cut(s)	86
Bst6I	CTCTTC	1 cut(s)	291
BstC8I	GCNNGC	2 cut(s)	207, 211
BstDEI	CTNAG	2 cut(s)	57, 263
BstDSI	CCRYGG	1 cut(s)	10
BstF5I	GGATG	3 cut(s)	22, 224, 250
BstKTI	GATC	3 cut(s)	66, 181, 336
BstMBI	GATC	3 cut(s)	63, 178, 333
BstMCI	CGRYCG	2 cut(s)	105, 181
BstMWI	GCNNNNNNNGC	2 cut(s)	202, 345
BstPAI	GACNNNNGTC	1 cut(s)	190
BstSCI	CCNGG	1 cut(s)	104
BstV2I	GAAGAC	2 cut(s)	45, 329
Bsu15I	ATCGAT	1 cut(s)	171
BsuI	GTATCC	1 cut(s)	296
BsuRI	GGCC	1 cut(s)	81
BsuTUI	ATCGAT	1 cut(s)	171
BtgI	CCRYGG	1 cut(s)	10
BtsCI	GGATG	3 cut(s)	22, 224, 250
BveI	ACCTGC	1 cut(s)	267
Cac8I	GCNNGC	2 cut(s)	207, 211
Cfr13I	GGNCC	2 cut(s)	7, 221
ClaI	ATCGAT	1 cut(s)	171
Csp6I	GTAC	2 cut(s)	139, 253
CviJI	RGCY	9 cut(s)	76, 81, 115, 205, 213, 301, 331, 348, 355
CviKI_1	RGCY	9 cut(s)	76, 81, 115, 205, 213, 301, 331, 348, 355
CviQI	GTAC	2 cut(s)	139, 253
DdeI	CTNAG	2 cut(s)	57, 263
DpnI	GATC	3 cut(s)	65, 180, 335
DpnII	GATC	3 cut(s)	63, 178, 333
EaeI	YGGCCR	1 cut(s)	79
Eam1104I	CTCTTC	1 cut(s)	291
EarI	CTCTTC	1 cut(s)	291
Ecl136II	GAGCTC	2 cut(s)	76, 301
Eco24I	GRGCYC	2 cut(s)	78, 303
Eco47I	GGWCC	2 cut(s)	7, 221
Eco53kI	GAGCTC	2 cut(s)	76, 301
Eco88I	CYCGRG	1 cut(s)	188
EcoICRI	GAGCTC	2 cut(s)	76, 301
EcoT22I	ATGCAT	1 cut(s)	371
EcoT38I	GRGCYC	2 cut(s)	78, 303
FaiI	YATR	1 cut(s)	371
FaqI	GGGAC	1 cut(s)	135
FauI	CCCGC	1 cut(s)	214
FokI	GGATG	3 cut(s)	29, 211, 257
FriOI	GRGCYC	2 cut(s)	78, 303
FspBI	CTAG	1 cut(s)	290
HaeIII	GGCC	1 cut(s)	81
HapII	CCGG	4 cut(s)	105, 219, 242, 359
HinfI	GANTC	4 cut(s)	20, 186, 191, 238
HpaII	CCGG	4 cut(s)	105, 219, 242, 359
Hpy188I	TCNGA	3 cut(s)	25, 73, 316
Hpy188III	TCNNGA	2 cut(s)	242, 304
Hpy99I	CGWCG	1 cut(s)	162
HpyCH4III	ACNGT	1 cut(s)	86
HpyCH4V	TGCA	1 cut(s)	369
HpyF10VI	GCNNNNNNNGC	2 cut(s)	202, 345
HpyF3I	CTNAG	2 cut(s)	57, 263
Kpn2I	TCCGGA	1 cut(s)	241
Kzo9I	GATC	3 cut(s)	63, 178, 333
LguI	GCTCTTC	1 cut(s)	291
LmnI	GCTCC	2 cut(s)	143, 267
LpnPI	CCDG	8 cut(s)	118, 125, 166, 215, 232, 255, 272, 372
LweI	GCATC	1 cut(s)	279
MaeI	CTAG	1 cut(s)	290
MalI	GATC	3 cut(s)	65, 180, 335
MboI	GATC	3 cut(s)	63, 178, 333
MboII	GAAGA	4 cut(s)	45, 305, 308, 334
MfeI	CAATTG	1 cut(s)	233
MhlI	GDGCHC	2 cut(s)	78, 303
MluCI	AATT	3 cut(s)	67, 233, 307
MlyI	GAGTC	3 cut(s)	180, 200, 247
MnlI	CCTC	3 cut(s)	243, 271, 366
Mph1103I	ATGCAT	1 cut(s)	371
MroI	TCCGGA	1 cut(s)	241
MspI	CCGG	4 cut(s)	105, 219, 242, 359
MspR9I	CCNGG	1 cut(s)	106
MunI	CAATTG	1 cut(s)	233
Mva1269I	GAATGC	1 cut(s)	371
MwoI	GCNNNNNNNGC	2 cut(s)	202, 345
NciI	CCSGG	1 cut(s)	106
NdeII	GATC	3 cut(s)	63, 178, 333
NlaIV	GGNNCC	1 cut(s)	110
NmeAIII	GCCGAG	1 cut(s)	57
NsiI	ATGCAT	1 cut(s)	371
PaeR7I	CTCGAG	1 cut(s)	188
PciSI	GCTCTTC	1 cut(s)	291
PctI	GAATGC	1 cut(s)	371
PfeI	GAWTC	1 cut(s)	20
Ple19I	CGATCG	1 cut(s)	181
PleI	GAGTC	3 cut(s)	180, 199, 246
PpsI	GAGTC	3 cut(s)	180, 199, 246
PshAI	GACNNNNGTC	1 cut(s)	190
Psp124BI	GAGCTC	2 cut(s)	78, 303
PspN4I	GGNNCC	1 cut(s)	110
PspPI	GGNCC	2 cut(s)	7, 221
PspXI	VCTCGAGB	1 cut(s)	188
PvuI	CGATCG	1 cut(s)	181
RsaI	GTAC	2 cut(s)	140, 254
RsaNI	GTAC	2 cut(s)	139, 253
SacI	GAGCTC	2 cut(s)	78, 303
SapI	GCTCTTC	1 cut(s)	291
Sau3AI	GATC	3 cut(s)	63, 178, 333
Sau96I	GGNCC	2 cut(s)	7, 221
SchI	GAGTC	3 cut(s)	180, 200, 247
ScrFI	CCNGG	1 cut(s)	106
SduI	GDGCHC	2 cut(s)	78, 303
SetI	ASST	7 cut(s)	9, 78, 117, 215, 254, 261, 303
SfaNI	GCATC	1 cut(s)	279
Sfr274I	CTCGAG	1 cut(s)	188
SinI	GGWCC	2 cut(s)	7, 221
SlaI	CTCGAG	1 cut(s)	188
SmlI	CTYRAG	3 cut(s)	188, 302, 377
SmoI	CTYRAG	3 cut(s)	188, 302, 377
Sse9I	AATT	3 cut(s)	67, 233, 307
SsiI	CCGC	2 cut(s)	207, 337
SspMI	CTAG	1 cut(s)	290
SstI	GAGCTC	2 cut(s)	78, 303
StyD4I	CCNGG	1 cut(s)	104
TaaI	ACNGT	1 cut(s)	86
TaqI	TCGA	4 cut(s)	101, 171, 177, 189
TaqII	GACCGA	1 cut(s)	341
TasI	AATT	3 cut(s)	67, 233, 307
TfiI	GAWTC	1 cut(s)	20
TspDTI	ATGAA	1 cut(s)	33
TspGWI	ACGGA	3 cut(s)	156, 217, 290
VpaK11BI	GGWCC	2 cut(s)	7, 221
XapI	RAATTY	1 cut(s)	307
XhoI	CTCGAG	1 cut(s)	188
XspI	CTAG	1 cut(s)	290
Zsp2I	ATGCAT	1 cut(s)	371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.