Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0000649

Physical Location & Seq

Genomic Coordinates Reverse (-)

10577975 .. 10582935

Gene Structure 4961 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G096900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGGCGACTGAATCTCCAGAGCAAGCCCCGGCAGCCGACGGAATCCAATCTCTTTCAATCTCCGAGCCTGCACAATCCAGTTCATCAAACCCAACTATCCAAATGAGTTTGGAGGAGAAGTACCAGATGTTGAGGAGCTTGGCAGACGAGTGTATCCAAGAGGACGAGCTTCGCAATTTGCTGGCTCATAAGCCTGAACCCATCGCCTATGATGGGTTTGAACCCTCCGGCCGAATGCATATTGCTCAGGGAGTTATGAAGACCATAAATGTGAACAAGATGACCTCCGCTGGCTGCAGAGTGAAAATATGGATTGCAGATTGGTTTGCAATGCTAAACAATAAAATGGGGGGTGATCTGAAAAAGATAGAGACTGTTGGGCGCTACATGATAGAGATATGGAGGGCTTCTGGGATGAATTTGGAAAATGGCAAAGTTGAGTTTTTGTGGTCTTCAAAGGAGATAAATGCGAGATCAGATGAGTACTGGCCTCGTGTGATGGACATAGCTCAAAAGTATACAGTTCAAAGGATAACTAGGTGTTGTCCGGCTATGGGTCGAAATGTGGAAGAAGATTTAACTGCAGCCCAAATTCTCTACCCATGTATGCAATGTGGAGATATATTCTTCCTTCAGGCTGACATCTGCCAGATGGGAATGGATCAGCGTAAAGTGAATGTTCTTGCAAGAGAGTATTGTGATGAAATCAAAAAGAAGGACAAGCCTATTATCTTGTCACACCACATGTTACCTGGTTTGCAGCAAGGGCAGGAGAAGATGTCTAAAAGTGATTTATCTTCCTCCGTATTCATGGAAGATGAAGCGGCGGAAGTGAATTTGAAGATAAAGAAAGCTTACTGCCCTCCAAATGTAGTTGAAGGGAATCCATGTATGGAGTACGTGAAATATCTCATCCTACCTTGGTTCAATGAGTTCATTGTAGAGCGCTCCGAAAAGAATGGGGGAAATCAGAGCTTCAAAAGCTTTGAAGAATTGGCTGCTGATTATGAAAGTGGTGAGCTACATCCAGCTGACCTTAAATCAGCTTTATCAAAAGCATTGAACAAAATACTGGAGCCTGTACGGGCACACTTCAAGAATGACGAAACTGCCAAACAGCTATTGCAAAGTGTCAAGAAGTATAGAGTCACCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004812 GO:0004831 GO:0005488 GO:0005515 GO:0005524 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006437 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016597 GO:0016874 GO:0016875 GO:0017076 GO:0019538 GO:0019752 GO:0030554 GO:0031406 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034645 GO:0034660 GO:0035639 GO:0036094 GO:0042802 GO:0042803 GO:0043038 GO:0043039 GO:0043043 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043177 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0046483 GO:0046983 GO:0071704 GO:0072545 GO:0090304 GO:0097159 GO:0097367 GO:0140098 GO:0140101 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_1b

Protein Analysis

386

Amino Acids

43.73

Weight (kDa)

5.72

Isoelectric Point (pI)

55.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33840
fragaria_vesca	FvH4_2g00190 FvH4_4g18133 FvH4_4g36450 FvH4_5g02490 FvH4_5g35150 FvH4_6g35840
malus_domestica	MD04G1034100.v1.1 MD06G1084100.v1.1
prunus_persica	Prupe.2G139100_v2.0.a1 Prupe.5G096900_v2.0.a1 Prupe.5G096900_v2.0.a1 Prupe.5G100500_v2.0.a1 Prupe.5G100500_v2.0.a1 Prupe.5G100500_v2.0.a1
pyrus_communis	pycom04g02850
rosa_chinensis	RchiOBHm_Chr1g0324941 RchiOBHm_Chr1g0340751 RchiOBHm_Chr2g0133721 RchiOBHm_Chr2g0153921 RchiOBHm_Chr4g0396761 RchiOBHm_Chr4g0414291 RchiOBHm_Chr4g0429871 RchiOBHm_Chr4g0446211 RchiOBHm_Chr5g0057181 RchiOBHm_Chr5g0057391 RchiOBHm_Chr5g0077561 RchiOBHm_Chr6g0307121 RchiOBHm_Chr7g0197611
rosa_laevigata	RLG00000003922 RLG00000005681 RLG00000017313 RLG00000029149 RLG00000035152
rosa_multiflora	Rmu_co8043936.1_g000001 Rmu_sc0001164.1_g000009 Rmu_sc0001334.1_g000004 Rmu_sc0004952.1_g000011 Rmu_sc0013154.1_g000007 Rmu_sc0017650.1_g000006 Rmu_sc0018062.1_g000003
rosa_roxburghii	Rroxscaffold_1G00023030 Rroxscaffold_2G00094650 Rroxscaffold_3G00223000 Rroxscaffold_3G00232150 Rroxscaffold_3G00248030 Rroxscaffold_3G00248040 Rroxscaffold_3G00258320
rosa_rugosa	Rorug04G0184600 Rorug04G0368500 Rorug05G0306000 Rorug05G0307100 Rorug07G0041900
rosa_samantha	Rh2CG164400 Rh2DG389300 Rh3AG306800 Rh4AG430600 Rh4BG440000 Rh4CG457300 Rh4DG438500 Rh5AG375500 Rh5BG386300 Rh5CG409700 Rh5DG400300 Rh6CG481100 Rh7AG166300 Rh7AG360600 Rh7BG168400 Rh7CG174700 Rh7DG168000 Rh7DG387600
rosa_wichuraiana	Rw2G022790 Rw4G036780 Rw5G035320 Rw5G035460 Rw7G014480 Rw7G038030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	518
AciI	CCGC	3 cut(s)	288, 824, 827
AclWI	GGATC	1 cut(s)	669
AcoI	YGGCCR	1 cut(s)	229
AcsI	RAATTY	3 cut(s)	418, 591, 835
AcuI	CTGAAG	1 cut(s)	617
AdeI	CACNNNGTG	1 cut(s)	1155
AfaI	GTAC	4 cut(s)	122, 485, 899, 1083
AfeI	AGCGCT	1 cut(s)	947
AfiI	CCNNNNNNNGG	2 cut(s)	213, 554
AflIII	ACRYGT	1 cut(s)	744
AjnI	CCWGG	2 cut(s)	751, 1151
Alw26I	GTCTC	1 cut(s)	365
AlwI	GGATC	1 cut(s)	669
Aor51HI	AGCGCT	1 cut(s)	947
AoxI	GGCC	2 cut(s)	229, 488
ApeKI	GCWGC	5 cut(s)	32, 294, 584, 760, 998
ApoI	RAATTY	3 cut(s)	418, 591, 835
AspLEI	GCGC	2 cut(s)	384, 948
AsuC2I	CCSGG	1 cut(s)	29
AsuHPI	GGTGA	3 cut(s)	365, 1028, 1141
BaeGI	GKGCMC	1 cut(s)	1090
BaeI	ACNNNNGTAYC	2 cut(s)	136, 169
BauI	CACGAG	1 cut(s)	492
BbsI	GAAGAC	2 cut(s)	266, 444
BbvI	GCAGC	5 cut(s)	44, 281, 596, 772, 985
BccI	CCATC	4 cut(s)	206, 209, 493, 646
BciT130I	CCWGG	2 cut(s)	753, 1153
BciVI	GTATCC	1 cut(s)	164
BcnI	CCSGG	1 cut(s)	29
BcoDI	GTCTC	1 cut(s)	365
BfaI	CTAG	1 cut(s)	537
BfmI	CTRYAG	2 cut(s)	295, 582
BfoI	RGCGCY	2 cut(s)	385, 949
BfuI	GTATCC	1 cut(s)	164
BisI	GCNGC	6 cut(s)	33, 295, 585, 761, 825, 999
BlsI	GCNGC	6 cut(s)	34, 296, 586, 762, 826, 1000
BmcAI	AGTACT	1 cut(s)	485
Bme1390I	CCNGG	3 cut(s)	29, 753, 1153
BmiI	GGNNCC	1 cut(s)	1077
BmrFI	CCNGG	3 cut(s)	29, 753, 1153
BpiI	GAAGAC	2 cut(s)	266, 444
BpmI	CTGGAG	1 cut(s)	1094
Bpu10I	CCTNAGC	1 cut(s)	246
BpuMI	CCSGG	1 cut(s)	29
BsaAI	YACGTR	1 cut(s)	901
BsaJI	CCNNGG	2 cut(s)	27, 920
BsaXI	ACNNNNNCTCC	5 cut(s)	28, 104, 134, 764, 794
Bsc4I	CCNNNNNNNGG	2 cut(s)	213, 554
Bse1I	ACTGG	3 cut(s)	78, 491, 1077
Bse3DI	GCAATG	2 cut(s)	336, 617
BseBI	CCWGG	2 cut(s)	753, 1153
BseDI	CCNNGG	2 cut(s)	27, 920
BseGI	GGATG	3 cut(s)	420, 912, 1024
BseLI	CCNNNNNNNGG	2 cut(s)	213, 554
BseMI	GCAATG	2 cut(s)	336, 617
BseMII	CTCAG	1 cut(s)	260
BseNI	ACTGG	3 cut(s)	78, 491, 1077
BseRI	GAGGAG	2 cut(s)	128, 148
BseSI	GKGCMC	1 cut(s)	1090
BseX3I	CGGCCG	1 cut(s)	229
BseXI	GCAGC	5 cut(s)	44, 281, 596, 772, 985
BsgI	GTGCAG	1 cut(s)	54
Bsh1285I	CGRYCG	1 cut(s)	232
BshFI	GGCC	2 cut(s)	231, 490
BsiEI	CGRYCG	1 cut(s)	232
BsiSI	CCGG	3 cut(s)	29, 228, 548
BslI	CCNNNNNNNGG	2 cut(s)	213, 554
BsmAI	GTCTC	1 cut(s)	365
BsmI	GAATGC	1 cut(s)	240
BsnI	GGCC	2 cut(s)	231, 490
Bsp1286I	GDGCHC	1 cut(s)	1090
Bsp143I	GATC	3 cut(s)	355, 473, 661
BspACI	CCGC	3 cut(s)	288, 824, 827
BspANI	GGCC	2 cut(s)	231, 490
BspCNI	CTCAG	1 cut(s)	259
BspLI	GGNNCC	1 cut(s)	1077
BspMAI	CTGCAG	2 cut(s)	299, 586
BspPI	GGATC	1 cut(s)	669
BsrDI	GCAATG	2 cut(s)	336, 617
BsrI	ACTGG	3 cut(s)	78, 491, 1077
BssECI	CCNNGG	2 cut(s)	27, 920
BssMI	GATC	3 cut(s)	355, 473, 661
BssNAI	GTATAC	1 cut(s)	519
BssSI	CACGAG	1 cut(s)	492
BssT1I	CCWWGG	1 cut(s)	920
Bst1107I	GTATAC	1 cut(s)	519
Bst2BI	CACGAG	1 cut(s)	492
Bst2UI	CCWGG	2 cut(s)	753, 1153
Bst4CI	ACNGT	2 cut(s)	376, 523
BstBAI	YACGTR	1 cut(s)	901
BstC8I	GCNNGC	4 cut(s)	24, 69, 183, 292
BstDEI	CTNAG	1 cut(s)	246
BstF5I	GGATG	3 cut(s)	420, 912, 1024
BstH2I	RGCGCY	2 cut(s)	385, 949
BstHHI	GCGC	2 cut(s)	384, 948
BstKTI	GATC	3 cut(s)	358, 476, 664
BstMAI	GTCTC	1 cut(s)	365
BstMBI	GATC	3 cut(s)	355, 473, 661
BstMCI	CGRYCG	1 cut(s)	232
BstMWI	GCNNNNNNNGC	3 cut(s)	32, 766, 981
BstNI	CCWGG	2 cut(s)	753, 1153
BstNSI	RCATGY	1 cut(s)	748
BstSCI	CCNGG	3 cut(s)	27, 751, 1151
BstSFI	CTRYAG	2 cut(s)	295, 582
BstSLI	GKGCMC	1 cut(s)	1090
BstV1I	GCAGC	5 cut(s)	44, 281, 596, 772, 985
BstV2I	GAAGAC	2 cut(s)	266, 444
BstZ17I	GTATAC	1 cut(s)	519
BstZI	CGGCCG	1 cut(s)	229
BsuI	GTATCC	1 cut(s)	164
BsuRI	GGCC	2 cut(s)	231, 490
BtgZI	GCGATG	1 cut(s)	187
BtsCI	GGATG	3 cut(s)	420, 912, 1024
Cac8I	GCNNGC	4 cut(s)	24, 69, 183, 292
CfoI	GCGC	2 cut(s)	384, 948
CsiI	ACCWGGT	2 cut(s)	751, 1151
Csp6I	GTAC	4 cut(s)	121, 484, 898, 1082
CviAII	CATG	5 cut(s)	388, 603, 745, 811, 888
CviQI	GTAC	4 cut(s)	121, 484, 898, 1082
DdeI	CTNAG	1 cut(s)	246
DpnI	GATC	3 cut(s)	357, 475, 663
DpnII	GATC	3 cut(s)	355, 473, 661
DraIII	CACNNNGTG	1 cut(s)	1155
EaeI	YGGCCR	1 cut(s)	229
EagI	CGGCCG	1 cut(s)	229
EciI	GGCGGA	1 cut(s)	842
EclXI	CGGCCG	1 cut(s)	229
Eco130I	CCWWGG	1 cut(s)	920
Eco47III	AGCGCT	1 cut(s)	947
Eco52I	CGGCCG	1 cut(s)	229
Eco57I	CTGAAG	1 cut(s)	617
EcoRII	CCWGG	2 cut(s)	751, 1151
EcoT14I	CCWWGG	1 cut(s)	920
EcoT22I	ATGCAT	1 cut(s)	240
ErhI	CCWWGG	1 cut(s)	920
FaeI	CATG	5 cut(s)	391, 606, 748, 814, 891
FatI	CATG	5 cut(s)	387, 602, 744, 810, 887
FblI	GTMKAC	1 cut(s)	518
Fnu4HI	GCNGC	6 cut(s)	33, 295, 585, 761, 825, 999
FokI	GGATG	3 cut(s)	427, 899, 1011
Fsp4HI	GCNGC	6 cut(s)	33, 295, 585, 761, 825, 999
FspBI	CTAG	1 cut(s)	537
GlaI	GCGC	2 cut(s)	383, 947
GluI	GCNGC	6 cut(s)	33, 295, 585, 761, 825, 999
GsuI	CTGGAG	1 cut(s)	1094
HaeII	RGCGCY	2 cut(s)	385, 949
HaeIII	GGCC	2 cut(s)	231, 490
HapII	CCGG	3 cut(s)	29, 228, 548
HhaI	GCGC	2 cut(s)	384, 948
Hin1II	CATG	5 cut(s)	391, 606, 748, 814, 891
Hin6I	GCGC	2 cut(s)	382, 946
HinP1I	GCGC	2 cut(s)	382, 946
HindIII	AAGCTT	2 cut(s)	852, 982
HinfI	GANTC	4 cut(s)	11, 42, 883, 1146
HpaII	CCGG	3 cut(s)	29, 228, 548
HphI	GGTGA	3 cut(s)	365, 1028, 1141
Hpy166II	GTNNAC	2 cut(s)	274, 519
Hpy188I	TCNGA	5 cut(s)	64, 360, 478, 952, 972
Hpy188III	TCNNGA	3 cut(s)	17, 1096, 1135
Hpy8I	GTNNAC	2 cut(s)	274, 519
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	3 cut(s)	641, 709, 872
HpyCH4III	ACNGT	2 cut(s)	376, 523
HpyCH4IV	ACGT	1 cut(s)	900
HpyF10VI	GCNNNNNNNGC	3 cut(s)	32, 766, 981
HpyF3I	CTNAG	1 cut(s)	246
HpySE526I	ACGT	1 cut(s)	900
Hsp92II	CATG	5 cut(s)	391, 606, 748, 814, 891
HspAI	GCGC	2 cut(s)	382, 946
Kzo9I	GATC	3 cut(s)	355, 473, 661
LmnI	GCTCC	3 cut(s)	135, 953, 1075
Lsp1109I	GCAGC	5 cut(s)	44, 281, 596, 772, 985
MabI	ACCWGGT	2 cut(s)	751, 1151
MaeI	CTAG	1 cut(s)	537
MaeII	ACGT	1 cut(s)	900
MaeIII	GTNAC	3 cut(s)	735, 747, 1147
MalI	GATC	3 cut(s)	357, 475, 663
MboI	GATC	3 cut(s)	355, 473, 661
MhlI	GDGCHC	1 cut(s)	1090
MluCI	AATT	5 cut(s)	175, 418, 591, 835, 992
MlyI	GAGTC	1 cut(s)	1155
MnlI	CCTC	9 cut(s)	106, 126, 154, 235, 295, 396, 501, 811, 873
Mph1103I	ATGCAT	1 cut(s)	240
MseI	TTAA	2 cut(s)	578, 1038
MslI	CAYNNNNRTG	1 cut(s)	269
MspA1I	CMGCKG	2 cut(s)	290, 1031
MspI	CCGG	3 cut(s)	29, 228, 548
MspR9I	CCNGG	3 cut(s)	29, 753, 1153
Mva1269I	GAATGC	1 cut(s)	240
MvaI	CCWGG	2 cut(s)	753, 1153
MwoI	GCNNNNNNNGC	3 cut(s)	32, 766, 981
NciI	CCSGG	1 cut(s)	29
NdeII	GATC	3 cut(s)	355, 473, 661
NlaIII	CATG	5 cut(s)	391, 606, 748, 814, 891
NlaIV	GGNNCC	1 cut(s)	1077
NmuCI	GTSAC	2 cut(s)	735, 1147
NsiI	ATGCAT	1 cut(s)	240
NspI	RCATGY	1 cut(s)	748
PciI	ACATGT	1 cut(s)	744
PctI	GAATGC	1 cut(s)	240
PfeI	GAWTC	3 cut(s)	11, 42, 883
PkrI	GCNGC	6 cut(s)	34, 296, 586, 762, 826, 1000
PleI	GAGTC	1 cut(s)	1154
PpsI	GAGTC	1 cut(s)	1154
Ppu21I	YACGTR	1 cut(s)	901
PscI	ACATGT	1 cut(s)	744
Psp6I	CCWGG	2 cut(s)	751, 1151
PspGI	CCWGG	2 cut(s)	751, 1151
PspN4I	GGNNCC	1 cut(s)	1077
PstI	CTGCAG	2 cut(s)	299, 586
PvuII	CAGCTG	1 cut(s)	1031
RsaI	GTAC	4 cut(s)	122, 485, 899, 1083
RsaNI	GTAC	4 cut(s)	121, 484, 898, 1082
RseI	CAYNNNNRTG	1 cut(s)	269
SaqAI	TTAA	2 cut(s)	578, 1038
SatI	GCNGC	6 cut(s)	33, 295, 585, 761, 825, 999
Sau3AI	GATC	3 cut(s)	355, 473, 661
ScaI	AGTACT	1 cut(s)	485
SchI	GAGTC	1 cut(s)	1155
ScrFI	CCNGG	3 cut(s)	29, 753, 1153
SduI	GDGCHC	1 cut(s)	1090
SexAI	ACCWGGT	2 cut(s)	751, 1151
SfcI	CTRYAG	2 cut(s)	295, 582
SmiMI	CAYNNNNRTG	1 cut(s)	269
Sse9I	AATT	5 cut(s)	175, 418, 591, 835, 992
SsiI	CCGC	3 cut(s)	288, 824, 827
SspMI	CTAG	1 cut(s)	537
StyD4I	CCNGG	3 cut(s)	27, 751, 1151
StyI	CCWWGG	1 cut(s)	920
TaaI	ACNGT	2 cut(s)	376, 523
TaiI	ACGT	1 cut(s)	903
TaqI	TCGA	1 cut(s)	559
TasI	AATT	5 cut(s)	175, 418, 591, 835, 992
TatI	WGTACW	1 cut(s)	483
TauI	GCSGC	1 cut(s)	827
TfiI	GAWTC	3 cut(s)	11, 42, 883
Tru1I	TTAA	2 cut(s)	578, 1038
Tru9I	TTAA	2 cut(s)	578, 1038
TseFI	GTSAC	2 cut(s)	735, 1147
TseI	GCWGC	5 cut(s)	32, 294, 584, 760, 998
Tsp45I	GTSAC	2 cut(s)	735, 1147
TspDTI	ATGAA	8 cut(s)	72, 272, 431, 717, 799, 834, 925, 1023
TspGWI	ACGGA	2 cut(s)	54, 793
XapI	RAATTY	3 cut(s)	418, 591, 835
XceI	RCATGY	1 cut(s)	748
XcmI	CCANNNNNNNNNTGG	1 cut(s)	749
XmiI	GTMKAC	1 cut(s)	518
XspI	CTAG	1 cut(s)	537
ZrmI	AGTACT	1 cut(s)	485
Zsp2I	ATGCAT	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.