MD04G1034100.v1.1

Belongs to the class-I aminoacyl-tRNA synthetase family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Reverse (-)
3824076 .. 3827553
3478 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1034100.v1.1.491

Sequence Viewer

Length: 1170 bp
ATGGCGACCGAAACAACAGAGCAATCCCCGCCGGCCGACCAAGTCCAGTCGCTTTCAATATCCGAGCCTCAGGCCGATGACCAACCCTCCAGTTCATCAAATCCAACCACTTCATTGAGCTTGGAGGAGAAGTACCAGATCGTGAGGAGCGTGGCGGAGGAGTGTATTCAGGAGGATGAGCTTCGAAATCTGCTGGCTCACAAGACTGAACCCATCTGCTACGACGGGTTCGAACCCTCCGGTCGAATGCACATTGCTCAGGGAGTTATGAAGACTATTAATGTTAACAAGCTGACATCTGCTGGCTGCCGAGTGAAGATATGGATTGCAGATTGGTTTGCGCAGTTGAACAATAAGATGGGGGGTGATTTGAAAAAGATAGAGACAATTGGCCGCTACATGATTGAGATATGGAGGGCTGCGGGGATGAATTTGGACACTGGAAAAGTTGAGTTTTTGTGGTCGTCAAAGGAAATTAATGCGAGAGCACATGAGTACTGGCCTCGTGTGATGGATATAGCTCGGAAAAATAAACTTCCGAGAATAATTAGGTGTAGTCAGATTATGGGTCGAACTGAGCAAGATGAGTTAACGGCAGCCCAAATTCTCTACCCTTGTATGCAGTGTGCAGATATATTCTTTCTTCAGGCAGACATCTGCCAGTTGGGAATGGATCAACGTAAAGTCAATATGCTTGCAAGAGAGTATTGCGATGACATCAAAAAGAAGAACAAGCCTATTATCTTGTCACACCACATGTTACCTGGTTTGCAGCAAGGGCAGGAGAAAATGTCTAAAAGTGATGTGACGTCCTCCATATTAATGGAAGATGAAGAGGCTGAAGTGAATTTGAAGATAAAGAAAGCTTACTGTCCTCCAAATGTTGTCGATGGGAATCCATGTATGGAATATGTGAAGTATCTCATTCTACCTTGGTTCAATGGGTTTTCTGTTGAGCGGACTGAAAAGAATGGTGGAAATAAAACCTTCAAAACCTTTGAAGAATTGGCTGCTGATTATGAAAGCGGCGAGCTACATCCAGCAGACCTTAAATCAGCTTTATCAAAAGCATTGAACAAGATACTGGAGCCTGTACGAGCACACTTCAAGAATGACAAAGCTGCCAAGCAACTATTGCAAAGTGTTAAGAACTATAGAGTCACCAGGTGA

Protein Analysis

390

Amino Acids

44.2

Weight (kDa)

6.43

Isoelectric Point (pI)

51.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_1b PF00579 69 - 363 1.8e-62 tRNA synthetases class I (W and Y)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000649)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33840
fragaria_vesca FvH4_2g00190 FvH4_4g18133 FvH4_4g36450 FvH4_5g02490 FvH4_5g35150 FvH4_6g35840
malus_domestica MD04G1034100.v1.1 MD06G1084100.v1.1
prunus_persica Prupe.2G139100_v2.0.a1 Prupe.5G096900_v2.0.a1 Prupe.5G096900_v2.0.a1 Prupe.5G100500_v2.0.a1 Prupe.5G100500_v2.0.a1 Prupe.5G100500_v2.0.a1
pyrus_communis pycom04g02850
rosa_chinensis RchiOBHm_Chr1g0324941 RchiOBHm_Chr1g0340751 RchiOBHm_Chr2g0133721 RchiOBHm_Chr2g0153921 RchiOBHm_Chr4g0396761 RchiOBHm_Chr4g0414291 RchiOBHm_Chr4g0429871 RchiOBHm_Chr4g0446211 RchiOBHm_Chr5g0057181 RchiOBHm_Chr5g0057391 RchiOBHm_Chr5g0077561 RchiOBHm_Chr6g0307121 RchiOBHm_Chr7g0197611
rosa_laevigata RLG00000003922 RLG00000005681 RLG00000017313 RLG00000029149 RLG00000035152
rosa_multiflora Rmu_co8043936.1_g000001 Rmu_sc0001164.1_g000009 Rmu_sc0001334.1_g000004 Rmu_sc0004952.1_g000011 Rmu_sc0013154.1_g000007 Rmu_sc0017650.1_g000006 Rmu_sc0018062.1_g000003
rosa_roxburghii Rroxscaffold_1G00023030 Rroxscaffold_2G00094650 Rroxscaffold_3G00223000 Rroxscaffold_3G00232150 Rroxscaffold_3G00248030 Rroxscaffold_3G00248040 Rroxscaffold_3G00258320
rosa_rugosa Rorug04G0184600 Rorug04G0368500 Rorug05G0306000 Rorug05G0307100 Rorug07G0041900
rosa_samantha Rh2CG164400 Rh2DG389300 Rh3AG306800 Rh4AG430600 Rh4BG440000 Rh4CG457300 Rh4DG438500 Rh5AG375500 Rh5BG386300 Rh5CG409700 Rh5DG400300 Rh6CG481100 Rh7AG166300 Rh7AG360600 Rh7BG168400 Rh7CG174700 Rh7DG168000 Rh7DG387600
rosa_wichuraiana Rw2G022790 Rw4G036780 Rw5G035320 Rw5G035460 Rw7G014480 Rw7G038030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 812
Acc16I TGCGCA 1 cut(s) 342
AccBSI CCGCTC 1 cut(s) 958
AciI CCGC 6 cut(s) 29, 155, 394, 422, 958, 1026
AclWI GGATC 1 cut(s) 681
AcoI YGGCCR 2 cut(s) 33, 391
AcsI RAATTY 3 cut(s) 430, 603, 847
AcuI CTGAAG 2 cut(s) 629, 861
AcyI GRCGYC 1 cut(s) 809
AdeI CACNNNGTG 1 cut(s) 1167
AfaI GTAC 3 cut(s) 134, 497, 1095
AflIII ACRYGT 1 cut(s) 756
AgsI TTSAA 9 cut(s) 57, 349, 373, 853, 940, 991, 1001, 1075, 1108
AjnI CCWGG 2 cut(s) 763, 1163
AluBI AGCT 8 cut(s) 120, 181, 292, 521, 866, 1033, 1058, 1121
AluI AGCT 8 cut(s) 120, 181, 292, 521, 866, 1033, 1058, 1121
Alw21I GWGCWC 2 cut(s) 490, 1102
Alw26I GTCTC 1 cut(s) 377
AlwI GGATC 1 cut(s) 681
AoxI GGCC 4 cut(s) 33, 72, 391, 500
ApeKI GCWGC 6 cut(s) 306, 419, 596, 772, 1010, 1121
ApoI RAATTY 3 cut(s) 430, 603, 847
AseI ATTAAT 3 cut(s) 279, 477, 821
AspLEI GCGC 1 cut(s) 343
AsuHPI GGTGA 2 cut(s) 377, 1153
AsuII TTCGAA 2 cut(s) 184, 231
AxyI CCTNAGG 1 cut(s) 69
BauI CACGAG 1 cut(s) 504
BbsI GAAGAC 1 cut(s) 278
Bbv12I GWGCWC 2 cut(s) 490, 1102
BbvI GCAGC 6 cut(s) 293, 406, 608, 784, 997, 1108
BccI CCATC 4 cut(s) 221, 352, 505, 884
BceAI ACGGC 1 cut(s) 609
BciT130I CCWGG 2 cut(s) 765, 1165
BcoDI GTCTC 1 cut(s) 377
BfmI CTRYAG 1 cut(s) 1153
BisI GCNGC 8 cut(s) 307, 394, 420, 597, 773, 1011, 1027, 1122
BlsI GCNGC 8 cut(s) 308, 395, 421, 598, 774, 1012, 1028, 1123
BmcAI AGTACT 1 cut(s) 497
Bme1390I CCNGG 2 cut(s) 765, 1165
BmiI GGNNCC 1 cut(s) 1089
BmrFI CCNGG 2 cut(s) 765, 1165
BpiI GAAGAC 1 cut(s) 278
BpmI CTGGAG 2 cut(s) 73, 1106
Bpu10I CCTNAGC 1 cut(s) 258
Bpu14I TTCGAA 2 cut(s) 184, 231
BsaBI GATNNNNATC 1 cut(s) 894
BsaHI GRCGYC 1 cut(s) 809
BsaJI CCNNGG 1 cut(s) 932
BsaWI WCCGGW 1 cut(s) 239
BsaXI ACNNNNNCTCC 6 cut(s) 71, 101, 116, 146, 776, 806
Bse118I RCCGGY 1 cut(s) 31
Bse1I ACTGG 6 cut(s) 46, 90, 445, 503, 661, 1089
Bse21I CCTNAGG 1 cut(s) 69
Bse3DI GCAATG 1 cut(s) 252
Bse8I GATNNNNATC 1 cut(s) 894
BseBI CCWGG 2 cut(s) 765, 1165
BseDI CCNNGG 1 cut(s) 932
BseGI GGATG 3 cut(s) 181, 432, 1036
BseJI GATNNNNATC 1 cut(s) 894
BseMI GCAATG 1 cut(s) 252
BseMII CTCAG 3 cut(s) 83, 272, 567
BseNI ACTGG 6 cut(s) 46, 90, 445, 503, 661, 1089
BseRI GAGGAG 3 cut(s) 140, 160, 173
BseX3I CGGCCG 1 cut(s) 33
BseXI GCAGC 6 cut(s) 293, 406, 608, 784, 997, 1108
BsgI GTGCAG 1 cut(s) 648
Bsh1285I CGRYCG 3 cut(s) 9, 36, 244
BshFI GGCC 4 cut(s) 35, 74, 393, 502
BsiEI CGRYCG 3 cut(s) 9, 36, 244
BsiHKAI GWGCWC 2 cut(s) 490, 1102
BsiSI CCGG 2 cut(s) 32, 240
BsmAI GTCTC 1 cut(s) 377
BsmI GAATGC 1 cut(s) 252
BsnI GGCC 4 cut(s) 35, 74, 393, 502
Bsp119I TTCGAA 2 cut(s) 184, 231
Bsp1286I GDGCHC 2 cut(s) 490, 1102
Bsp143I GATC 2 cut(s) 138, 673
BspACI CCGC 6 cut(s) 29, 155, 394, 422, 958, 1026
BspANI GGCC 4 cut(s) 35, 74, 393, 502
BspCNI CTCAG 3 cut(s) 82, 271, 568
BspLI GGNNCC 1 cut(s) 1089
BspPI GGATC 1 cut(s) 681
BspT104I TTCGAA 2 cut(s) 184, 231
BsrBI CCGCTC 1 cut(s) 958
BsrDI GCAATG 1 cut(s) 252
BsrFI RCCGGY 1 cut(s) 31
BsrI ACTGG 6 cut(s) 46, 90, 445, 503, 661, 1089
BssAI RCCGGY 1 cut(s) 31
BssECI CCNNGG 1 cut(s) 932
BssMI GATC 2 cut(s) 138, 673
BssNI GRCGYC 1 cut(s) 809
BssSI CACGAG 1 cut(s) 504
BssT1I CCWWGG 1 cut(s) 932
Bst2BI CACGAG 1 cut(s) 504
Bst2UI CCWGG 2 cut(s) 765, 1165
Bst4CI ACNGT 1 cut(s) 872
Bst6I CTCTTC 1 cut(s) 828
BstACI GRCGYC 1 cut(s) 809
BstAPI GCANNNNNTGC 1 cut(s) 1135
BstBI TTCGAA 2 cut(s) 184, 231
BstC8I GCNNGC 5 cut(s) 33, 195, 304, 696, 1031
BstDEI CTNAG 3 cut(s) 69, 258, 576
BstF5I GGATG 3 cut(s) 181, 432, 1036
BstHHI GCGC 1 cut(s) 343
BstKTI GATC 2 cut(s) 141, 676
BstMAI GTCTC 1 cut(s) 377
BstMBI GATC 2 cut(s) 138, 673
BstMCI CGRYCG 3 cut(s) 9, 36, 244
BstMWI GCNNNNNNNGC 3 cut(s) 28, 778, 1135
BstNI CCWGG 2 cut(s) 765, 1165
BstNSI RCATGY 1 cut(s) 760
BstSCI CCNGG 2 cut(s) 763, 1163
BstSFI CTRYAG 1 cut(s) 1153
BstV1I GCAGC 6 cut(s) 293, 406, 608, 784, 997, 1108
BstV2I GAAGAC 1 cut(s) 278
BstXI CCANNNNNNTGG 1 cut(s) 823
BstZI CGGCCG 1 cut(s) 33
Bsu36I CCTNAGG 1 cut(s) 69
BsuRI GGCC 4 cut(s) 35, 74, 393, 502
BtgZI GCGATG 1 cut(s) 726
BtsCI GGATG 3 cut(s) 181, 432, 1036
BtsI GCAGTG 1 cut(s) 629
BtsIMutI CAGTG 2 cut(s) 438, 629
Cac8I GCNNGC 5 cut(s) 33, 195, 304, 696, 1031
CfoI GCGC 1 cut(s) 343
Cfr10I RCCGGY 1 cut(s) 31
CsiI ACCWGGT 2 cut(s) 763, 1163
Csp6I GTAC 3 cut(s) 133, 496, 1094
CviAII CATG 4 cut(s) 400, 491, 757, 900
CviQI GTAC 3 cut(s) 133, 496, 1094
DdeI CTNAG 3 cut(s) 69, 258, 576
DpnI GATC 2 cut(s) 140, 675
DpnII GATC 2 cut(s) 138, 673
DraIII CACNNNGTG 1 cut(s) 1167
EaeI YGGCCR 2 cut(s) 33, 391
EagI CGGCCG 1 cut(s) 33
Eam1104I CTCTTC 1 cut(s) 828
EarI CTCTTC 1 cut(s) 828
EciI GGCGGA 1 cut(s) 170
EclXI CGGCCG 1 cut(s) 33
Eco130I CCWWGG 1 cut(s) 932
Eco52I CGGCCG 1 cut(s) 33
Eco57I CTGAAG 2 cut(s) 629, 861
Eco81I CCTNAGG 1 cut(s) 69
EcoRII CCWGG 2 cut(s) 763, 1163
EcoT14I CCWWGG 1 cut(s) 932
ErhI CCWWGG 1 cut(s) 932
FaeI CATG 4 cut(s) 403, 494, 760, 903
FatI CATG 4 cut(s) 399, 490, 756, 899
FauI CCCGC 2 cut(s) 36, 415
Fnu4HI GCNGC 8 cut(s) 307, 394, 420, 597, 773, 1011, 1027, 1122
FokI GGATG 3 cut(s) 188, 439, 1023
Fsp4HI GCNGC 8 cut(s) 307, 394, 420, 597, 773, 1011, 1027, 1122
FspI TGCGCA 1 cut(s) 342
GlaI GCGC 1 cut(s) 342
GluI GCNGC 8 cut(s) 307, 394, 420, 597, 773, 1011, 1027, 1122
GsuI CTGGAG 2 cut(s) 73, 1106
HaeIII GGCC 4 cut(s) 35, 74, 393, 502
HapII CCGG 2 cut(s) 32, 240
HhaI GCGC 1 cut(s) 343
Hin1I GRCGYC 1 cut(s) 809
Hin1II CATG 4 cut(s) 403, 494, 760, 903
Hin6I GCGC 1 cut(s) 341
HinP1I GCGC 1 cut(s) 341
HincII GTYRAC 2 cut(s) 286, 591
HindII GTYRAC 2 cut(s) 286, 591
HindIII AAGCTT 1 cut(s) 864
HinfI GANTC 2 cut(s) 895, 1158
HpaI GTTAAC 2 cut(s) 286, 591
HpaII CCGG 2 cut(s) 32, 240
HphI GGTGA 2 cut(s) 377, 1153
Hpy166II GTNNAC 2 cut(s) 286, 591
Hpy188I TCNGA 4 cut(s) 64, 525, 540, 561
Hpy188III TCNNGA 3 cut(s) 142, 170, 1108
Hpy8I GTNNAC 2 cut(s) 286, 591
Hpy99I CGWCG 1 cut(s) 227
HpyAV CCTTC 1 cut(s) 997
HpyCH4III ACNGT 1 cut(s) 872
HpyCH4IV ACGT 2 cut(s) 679, 809
HpyCH4V TGCA 7 cut(s) 250, 329, 622, 629, 698, 772, 1138
HpyF10VI GCNNNNNNNGC 3 cut(s) 28, 778, 1135
HpyF3I CTNAG 3 cut(s) 69, 258, 576
HpySE526I ACGT 2 cut(s) 679, 809
Hsp92I GRCGYC 1 cut(s) 809
Hsp92II CATG 4 cut(s) 403, 494, 760, 903
HspAI GCGC 1 cut(s) 341
KroI GCCGGC 1 cut(s) 31
KroNI GCCGGC 1 cut(s) 33
KspAI GTTAAC 2 cut(s) 286, 591
Kzo9I GATC 2 cut(s) 138, 673
LmnI GCTCC 2 cut(s) 147, 1087
Lsp1109I GCAGC 6 cut(s) 293, 406, 608, 784, 997, 1108
MabI ACCWGGT 2 cut(s) 763, 1163
MaeII ACGT 2 cut(s) 679, 809
MaeIII GTNAC 4 cut(s) 747, 759, 805, 1159
MalI GATC 2 cut(s) 140, 675
MbiI CCGCTC 1 cut(s) 958
MboI GATC 2 cut(s) 138, 673
MboII GAAGA 8 cut(s) 283, 328, 635, 739, 839, 845, 865, 1013
MfeI CAATTG 1 cut(s) 387
MhlI GDGCHC 2 cut(s) 490, 1102
MluCI AATT 7 cut(s) 387, 430, 474, 546, 603, 847, 1004
MlyI GAGTC 1 cut(s) 1167
MmeI TCCRAC 1 cut(s) 128
MroNI GCCGGC 1 cut(s) 31
MseI TTAA 7 cut(s) 279, 285, 477, 590, 821, 1050, 1146
MslI CAYNNNNRTG 1 cut(s) 821
MspI CCGG 2 cut(s) 32, 240
MspR9I CCNGG 2 cut(s) 765, 1165
MunI CAATTG 1 cut(s) 387
Mva1269I GAATGC 1 cut(s) 252
MvaI CCWGG 2 cut(s) 765, 1165
MwoI GCNNNNNNNGC 3 cut(s) 28, 778, 1135
NaeI GCCGGC 1 cut(s) 33
NdeII GATC 2 cut(s) 138, 673
NgoMIV GCCGGC 1 cut(s) 31
NlaIII CATG 4 cut(s) 403, 494, 760, 903
NlaIV GGNNCC 1 cut(s) 1089
NmeAIII GCCGAG 1 cut(s) 335
NmuCI GTSAC 3 cut(s) 747, 805, 1159
NsbI TGCGCA 1 cut(s) 342
NspI RCATGY 1 cut(s) 760
NspV TTCGAA 2 cut(s) 184, 231
PciI ACATGT 1 cut(s) 756
PcsI WCGNNNNNNNCGW 2 cut(s) 147, 228
PctI GAATGC 1 cut(s) 252
PdiI GCCGGC 1 cut(s) 33
PfeI GAWTC 1 cut(s) 895
PflFI GACNNNGTC 1 cut(s) 41
PkrI GCNGC 8 cut(s) 308, 395, 421, 598, 774, 1012, 1028, 1123
PleI GAGTC 1 cut(s) 1166
PpsI GAGTC 1 cut(s) 1166
PscI ACATGT 1 cut(s) 756
PshBI ATTAAT 3 cut(s) 279, 477, 821
Psp6I CCWGG 2 cut(s) 763, 1163
PspGI CCWGG 2 cut(s) 763, 1163
PspN4I GGNNCC 1 cut(s) 1089
PsyI GACNNNGTC 1 cut(s) 41
RsaI GTAC 3 cut(s) 134, 497, 1095
RsaNI GTAC 3 cut(s) 133, 496, 1094
RseI CAYNNNNRTG 1 cut(s) 821
SaqAI TTAA 7 cut(s) 279, 285, 477, 590, 821, 1050, 1146
SatI GCNGC 8 cut(s) 307, 394, 420, 597, 773, 1011, 1027, 1122
Sau3AI GATC 2 cut(s) 138, 673
ScaI AGTACT 1 cut(s) 497
SchI GAGTC 1 cut(s) 1167
ScrFI CCNGG 2 cut(s) 765, 1165
SduI GDGCHC 2 cut(s) 490, 1102
SexAI ACCWGGT 2 cut(s) 763, 1163
SfcI CTRYAG 1 cut(s) 1153
SfuI TTCGAA 2 cut(s) 184, 231
SmiMI CAYNNNNRTG 1 cut(s) 821
Sse9I AATT 7 cut(s) 387, 430, 474, 546, 603, 847, 1004
SsiI CCGC 6 cut(s) 29, 155, 394, 422, 958, 1026
StyD4I CCNGG 2 cut(s) 763, 1163
StyI CCWWGG 1 cut(s) 932
TaaI ACNGT 1 cut(s) 872
TaiI ACGT 2 cut(s) 682, 812
TaqI TCGA 5 cut(s) 184, 231, 244, 571, 888
TaqII GACCGA 1 cut(s) 23
TasI AATT 7 cut(s) 387, 430, 474, 546, 603, 847, 1004
TatI WGTACW 1 cut(s) 495
TauI GCSGC 2 cut(s) 396, 1029
TfiI GAWTC 1 cut(s) 895
Tru1I TTAA 7 cut(s) 279, 285, 477, 590, 821, 1050, 1146
Tru9I TTAA 7 cut(s) 279, 285, 477, 590, 821, 1050, 1146
TscAI CASTG 2 cut(s) 445, 629
TseFI GTSAC 3 cut(s) 747, 805, 1159
TseI GCWGC 6 cut(s) 306, 419, 596, 772, 1010, 1121
Tsp45I GTSAC 3 cut(s) 747, 805, 1159
TspDTI ATGAA 6 cut(s) 84, 102, 284, 443, 846, 1035
TspRI CASTG 2 cut(s) 445, 629
Tth111I GACNNNGTC 1 cut(s) 41
VspI ATTAAT 3 cut(s) 279, 477, 821
XapI RAATTY 3 cut(s) 430, 603, 847
XceI RCATGY 1 cut(s) 760
XcmI CCANNNNNNNNNTGG 1 cut(s) 761
ZraI GACGTC 1 cut(s) 810
ZrmI AGTACT 1 cut(s) 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.