Rh7CG174700

Belongs to the class-I aminoacyl-tRNA synthetase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
Physical Location & Seq
Reverse (-)
14940522 .. 14944416
3895 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG174700.1

Sequence Viewer

Length: 984 bp
ATGGCAACCGAAGCACCGGAGCAAGTCCCCGCCGACGAAATCAAATCGATGTCGATCGCTGACTCTGAGTCGCAAGACCAGCCCGCAAGCTCGTCCACTCCATCTGTCCCATTGAGTTTGGATGAGAGGTACAACCTACTTAGGAGCATCGCAGAGGAGTGTATCCAAGAAGAGGAGCTCAAGAATTTGCTGGATAAGAAGGCCGATCCGATCTGCTACGACGGCTTTGAGCCCTCCGGGAGAATGCATATCGCTCAGGGAGTTTTGAAGGCAATTAATGTGAACAAGATGATTGCCGGAGGCTGCAAAGTGAAGATATGGATTGCCGATTGGTTTGCGCAGCTAAACAATAAGATGGGGGGTGATTTGAAGAAGATTGAAACTGTGGGGAAGTATTTTATTGAGATATGGAAGTCTGTGGGGATGAATCTGGACAGTGGGAAAGTTGAGTTTCTTTGGTCTTCGAAGGAGATCAATGCCAGGTCACATGAGTACTGGCCGCTTGTAATGGATATTGCCAGGAAAAACAAGCTTCCGAGGATCATTAGGTGTAGTCAAATTATGGGTCGAACGGATCATGAAGAGTTAACTGCTGCCCAGATCTTCTACCCGTGTATGCAATGTGCAGATATTTTCTTCCTGCAGGCTGACATCTGTCAACTCGGTATGGATCAACGTAAAGTGAATGTGCTTGCACGAGAGTACTGTGATGACATCAAGAAGAAAAACAAGCCCATTATCTTGTCACACCATATGCTACCTGGTTTACAGCAAGGGCAGGAGAAAATGTCAAAAAGTGATCTATCCTCCTCCATATTTATGGAAGATGAAGAGGCGGAAGTGAATACAAAGATTAAGAAGGCTTACTGCCCTCCAGAAAAGGTTGAAGGCAATCCCTGTTTGGAATACGTACAGTACCTCATTTTTCCTTGGTTTCATGAGTTCACCGTAGAGCGCAGTGAAAAGAACGGTGGAGATAGGTAA

Protein Analysis

327

Amino Acids

37.27

Weight (kDa)

5.36

Isoelectric Point (pI)

56.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_1b PF00579 67 - 314 4.5e-55 tRNA synthetases class I (W and Y)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000649)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33840
fragaria_vesca FvH4_2g00190 FvH4_4g18133 FvH4_4g36450 FvH4_5g02490 FvH4_5g35150 FvH4_6g35840
malus_domestica MD04G1034100.v1.1 MD06G1084100.v1.1
prunus_persica Prupe.2G139100_v2.0.a1 Prupe.5G096900_v2.0.a1 Prupe.5G096900_v2.0.a1 Prupe.5G100500_v2.0.a1 Prupe.5G100500_v2.0.a1 Prupe.5G100500_v2.0.a1
pyrus_communis pycom04g02850
rosa_chinensis RchiOBHm_Chr1g0324941 RchiOBHm_Chr1g0340751 RchiOBHm_Chr2g0133721 RchiOBHm_Chr2g0153921 RchiOBHm_Chr4g0396761 RchiOBHm_Chr4g0414291 RchiOBHm_Chr4g0429871 RchiOBHm_Chr4g0446211 RchiOBHm_Chr5g0057181 RchiOBHm_Chr5g0057391 RchiOBHm_Chr5g0077561 RchiOBHm_Chr6g0307121 RchiOBHm_Chr7g0197611
rosa_laevigata RLG00000003922 RLG00000005681 RLG00000017313 RLG00000029149 RLG00000035152
rosa_multiflora Rmu_co8043936.1_g000001 Rmu_sc0001164.1_g000009 Rmu_sc0001334.1_g000004 Rmu_sc0004952.1_g000011 Rmu_sc0013154.1_g000007 Rmu_sc0017650.1_g000006 Rmu_sc0018062.1_g000003
rosa_roxburghii Rroxscaffold_1G00023030 Rroxscaffold_2G00094650 Rroxscaffold_3G00223000 Rroxscaffold_3G00232150 Rroxscaffold_3G00248030 Rroxscaffold_3G00248040 Rroxscaffold_3G00258320
rosa_rugosa Rorug04G0184600 Rorug04G0368500 Rorug05G0306000 Rorug05G0307100 Rorug07G0041900
rosa_samantha Rh2CG164400 Rh2DG389300 Rh3AG306800 Rh4AG430600 Rh4BG440000 Rh4CG457300 Rh4DG438500 Rh5AG375500 Rh5BG386300 Rh5CG409700 Rh5DG400300 Rh6CG481100 Rh7AG166300 Rh7AG360600 Rh7BG168400 Rh7CG174700 Rh7DG168000 Rh7DG387600
rosa_wichuraiana Rw2G022790 Rw4G036780 Rw5G035320 Rw5G035460 Rw7G014480 Rw7G038030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 339
AciI CCGC 4 cut(s) 30, 84, 500, 836
AclWI GGATC 4 cut(s) 200, 548, 582, 678
AcoI YGGCCR 1 cut(s) 497
AcsI RAATTY 1 cut(s) 184
AfaI GTAC 5 cut(s) 131, 494, 704, 912, 917
AfiI CCNNNNNNNGG 1 cut(s) 172
AgsI TTSAA 4 cut(s) 268, 370, 380, 887
AhdI GACNNNNNGTC 1 cut(s) 67
AjnI CCWGG 3 cut(s) 479, 518, 760
AluBI AGCT 4 cut(s) 90, 178, 343, 532
AluI AGCT 4 cut(s) 90, 178, 343, 532
Alw21I GWGCWC 1 cut(s) 180
AlwI GGATC 4 cut(s) 200, 548, 582, 678
AoxI GGCC 2 cut(s) 201, 497
ApeKI GCWGC 3 cut(s) 303, 340, 593
ApoI RAATTY 1 cut(s) 184
ArsI GACNNNNNNTTYG 2 cut(s) 550, 582
AseI ATTAAT 1 cut(s) 276
AspLEI GCGC 2 cut(s) 340, 957
AsuC2I CCSGG 1 cut(s) 238
AsuHPI GGTGA 2 cut(s) 374, 937
AsuII TTCGAA 1 cut(s) 464
BanII GRGCYC 2 cut(s) 180, 234
BauI CACGAG 1 cut(s) 696
BbsI GAAGAC 1 cut(s) 453
Bbv12I GWGCWC 1 cut(s) 180
BbvI GCAGC 3 cut(s) 290, 352, 580
BccI CCATC 2 cut(s) 109, 349
BceAI ACGGC 1 cut(s) 238
BcgI CGANNNNNNTGC 2 cut(s) 317, 351
BciT130I CCWGG 3 cut(s) 481, 520, 762
BciVI GTATCC 1 cut(s) 173
BcnI CCSGG 1 cut(s) 238
BfmI CTRYAG 1 cut(s) 641
BfuI GTATCC 1 cut(s) 173
BglII AGATCT 1 cut(s) 600
BisI GCNGC 4 cut(s) 304, 341, 500, 594
BlsI GCNGC 4 cut(s) 305, 342, 501, 595
BmcAI AGTACT 2 cut(s) 494, 704
Bme1390I CCNGG 4 cut(s) 238, 481, 520, 762
BmeRI GACNNNNNGTC 1 cut(s) 67
BmrFI CCNGG 4 cut(s) 238, 481, 520, 762
BmsI GCATC 1 cut(s) 156
BoxI GACNNNNGTC 1 cut(s) 654
BpiI GAAGAC 1 cut(s) 453
BpmI CTGGAG 1 cut(s) 858
Bpu10I CCTNAGC 1 cut(s) 255
Bpu14I TTCGAA 1 cut(s) 464
BpuEI CTTGAG 1 cut(s) 164
BpuMI CCSGG 1 cut(s) 238
Bsa29I ATCGAT 1 cut(s) 47
BsaAI YACGTR 1 cut(s) 910
BsaBI GATNNNNATC 1 cut(s) 53
BsaJI CCNNGG 2 cut(s) 536, 929
BsaWI WCCGGW 1 cut(s) 16
BsaXI ACNNNNNCTCC 2 cut(s) 773, 803
Bsc4I CCNNNNNNNGG 1 cut(s) 172
Bse1I ACTGG 1 cut(s) 500
Bse3DI GCAATG 1 cut(s) 626
Bse8I GATNNNNATC 1 cut(s) 53
BseBI CCWGG 3 cut(s) 481, 520, 762
BseCI ATCGAT 1 cut(s) 47
BseDI CCNNGG 2 cut(s) 536, 929
BseGI GGATG 2 cut(s) 127, 429
BseJI GATNNNNATC 1 cut(s) 53
BseLI CCNNNNNNNGG 1 cut(s) 172
BseMI GCAATG 1 cut(s) 626
BseMII CTCAG 2 cut(s) 57, 269
BseNI ACTGG 1 cut(s) 500
BseRI GAGGAG 3 cut(s) 170, 188, 799
BseXI GCAGC 3 cut(s) 290, 352, 580
BsgI GTGCAG 1 cut(s) 645
Bsh1285I CGRYCG 1 cut(s) 57
BshFI GGCC 2 cut(s) 203, 499
BshVI ATCGAT 1 cut(s) 47
BsiEI CGRYCG 1 cut(s) 57
BsiHKAI GWGCWC 1 cut(s) 180
BsiSI CCGG 3 cut(s) 17, 237, 297
BslFI GGGAC 2 cut(s) 11, 92
BslI CCNNNNNNNGG 1 cut(s) 172
BsmFI GGGAC 2 cut(s) 11, 92
BsmI GAATGC 1 cut(s) 249
BsnI GGCC 2 cut(s) 203, 499
Bsp119I TTCGAA 1 cut(s) 464
Bsp1286I GDGCHC 2 cut(s) 180, 234
Bsp143I GATC 9 cut(s) 54, 205, 210, 471, 540, 574, 600, 670, 799
BspACI CCGC 4 cut(s) 30, 84, 500, 836
BspANI GGCC 2 cut(s) 203, 499
BspCNI CTCAG 2 cut(s) 58, 268
BspDI ATCGAT 1 cut(s) 47
BspHI TCATGA 2 cut(s) 577, 937
BspMAI CTGCAG 1 cut(s) 645
BspPI GGATC 4 cut(s) 200, 548, 582, 678
BspT104I TTCGAA 1 cut(s) 464
BsrDI GCAATG 1 cut(s) 626
BsrI ACTGG 1 cut(s) 500
BssECI CCNNGG 2 cut(s) 536, 929
BssMI GATC 9 cut(s) 54, 205, 210, 471, 540, 574, 600, 670, 799
BssSI CACGAG 1 cut(s) 696
BssT1I CCWWGG 1 cut(s) 929
Bst2BI CACGAG 1 cut(s) 696
Bst2UI CCWGG 3 cut(s) 481, 520, 762
Bst4CI ACNGT 6 cut(s) 385, 437, 707, 915, 949, 971
Bst6I CTCTTC 3 cut(s) 165, 576, 825
BstBAI YACGTR 1 cut(s) 910
BstBI TTCGAA 1 cut(s) 464
BstC8I GCNNGC 4 cut(s) 84, 88, 645, 693
BstDEI CTNAG 3 cut(s) 66, 140, 255
BstF5I GGATG 2 cut(s) 127, 429
BstHHI GCGC 2 cut(s) 340, 957
BstKTI GATC 9 cut(s) 57, 208, 213, 474, 543, 577, 603, 673, 802
BstMBI GATC 9 cut(s) 54, 205, 210, 471, 540, 574, 600, 670, 799
BstMCI CGRYCG 1 cut(s) 57
BstMWI GCNNNNNNNGC 3 cut(s) 11, 79, 222
BstNI CCWGG 3 cut(s) 481, 520, 762
BstPAI GACNNNNGTC 1 cut(s) 654
BstSCI CCNGG 4 cut(s) 236, 479, 518, 760
BstSFI CTRYAG 1 cut(s) 641
BstSNI TACGTA 1 cut(s) 910
BstV1I GCAGC 3 cut(s) 290, 352, 580
BstV2I GAAGAC 1 cut(s) 453
BstX2I RGATCY 1 cut(s) 600
BstXI CCANNNNNNTGG 1 cut(s) 820
BstYI RGATCY 1 cut(s) 600
Bsu15I ATCGAT 1 cut(s) 47
BsuI GTATCC 1 cut(s) 173
BsuRI GGCC 2 cut(s) 203, 499
BsuTUI ATCGAT 1 cut(s) 47
BtgZI GCGATG 1 cut(s) 133
BtsCI GGATG 2 cut(s) 127, 429
BtsI GCAGTG 1 cut(s) 964
BtsIMutI CAGTG 2 cut(s) 442, 964
Cac8I GCNNGC 4 cut(s) 84, 88, 645, 693
CciI TCATGA 2 cut(s) 577, 937
CfoI GCGC 2 cut(s) 340, 957
ClaI ATCGAT 1 cut(s) 47
CsiI ACCWGGT 1 cut(s) 760
Csp6I GTAC 5 cut(s) 130, 493, 703, 911, 916
CviAII CATG 3 cut(s) 488, 578, 938
CviQI GTAC 5 cut(s) 130, 493, 703, 911, 916
DdeI CTNAG 3 cut(s) 66, 140, 255
DpnI GATC 9 cut(s) 56, 207, 212, 473, 542, 576, 602, 672, 801
DpnII GATC 9 cut(s) 54, 205, 210, 471, 540, 574, 600, 670, 799
DriI GACNNNNNGTC 1 cut(s) 67
EaeI YGGCCR 1 cut(s) 497
Eam1104I CTCTTC 3 cut(s) 165, 576, 825
Eam1105I GACNNNNNGTC 1 cut(s) 67
EarI CTCTTC 3 cut(s) 165, 576, 825
EciI GGCGGA 1 cut(s) 851
Ecl136II GAGCTC 1 cut(s) 178
Eco105I TACGTA 1 cut(s) 910
Eco130I CCWWGG 1 cut(s) 929
Eco24I GRGCYC 2 cut(s) 180, 234
Eco53kI GAGCTC 1 cut(s) 178
EcoICRI GAGCTC 1 cut(s) 178
EcoRII CCWGG 3 cut(s) 479, 518, 760
EcoT14I CCWWGG 1 cut(s) 929
EcoT22I ATGCAT 1 cut(s) 249
EcoT38I GRGCYC 2 cut(s) 180, 234
ErhI CCWWGG 1 cut(s) 929
FaeI CATG 3 cut(s) 491, 581, 941
FaqI GGGAC 2 cut(s) 11, 92
FatI CATG 3 cut(s) 487, 577, 937
FauI CCCGC 2 cut(s) 37, 91
FauNDI CATATG 1 cut(s) 753
Fnu4HI GCNGC 4 cut(s) 304, 341, 500, 594
FokI GGATG 2 cut(s) 134, 436
FriOI GRGCYC 2 cut(s) 180, 234
Fsp4HI GCNGC 4 cut(s) 304, 341, 500, 594
FspI TGCGCA 1 cut(s) 339
GlaI GCGC 2 cut(s) 339, 956
GluI GCNGC 4 cut(s) 304, 341, 500, 594
GsuI CTGGAG 1 cut(s) 858
HaeIII GGCC 2 cut(s) 203, 499
HapII CCGG 3 cut(s) 17, 237, 297
HhaI GCGC 2 cut(s) 340, 957
Hin1II CATG 3 cut(s) 491, 581, 941
Hin6I GCGC 2 cut(s) 338, 955
HinP1I GCGC 2 cut(s) 338, 955
HincII GTYRAC 2 cut(s) 588, 659
HindII GTYRAC 2 cut(s) 588, 659
HindIII AAGCTT 1 cut(s) 530
HinfI GANTC 3 cut(s) 62, 68, 427
HpaI GTTAAC 1 cut(s) 588
HpaII CCGG 3 cut(s) 17, 237, 297
HphI GGTGA 2 cut(s) 374, 937
Hpy166II GTNNAC 6 cut(s) 96, 283, 588, 659, 767, 945
Hpy188I TCNGA 3 cut(s) 67, 210, 537
Hpy188III TCNNGA 6 cut(s) 181, 431, 578, 718, 875, 938
Hpy8I GTNNAC 6 cut(s) 96, 283, 588, 659, 767, 945
Hpy99I CGWCG 2 cut(s) 38, 224
HpyAV CCTTC 5 cut(s) 193, 262, 460, 853, 881
HpyCH4III ACNGT 6 cut(s) 385, 437, 707, 915, 949, 971
HpyCH4IV ACGT 2 cut(s) 676, 909
HpyCH4V TGCA 6 cut(s) 247, 306, 619, 626, 643, 695
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 79, 222
HpyF3I CTNAG 3 cut(s) 66, 140, 255
HpySE526I ACGT 2 cut(s) 676, 909
Hsp92II CATG 3 cut(s) 491, 581, 941
HspAI GCGC 2 cut(s) 338, 955
KspAI GTTAAC 1 cut(s) 588
Kzo9I GATC 9 cut(s) 54, 205, 210, 471, 540, 574, 600, 670, 799
LmnI GCTCC 3 cut(s) 19, 144, 175
Lsp1109I GCAGC 3 cut(s) 290, 352, 580
LweI GCATC 1 cut(s) 156
MabI ACCWGGT 1 cut(s) 760
MaeII ACGT 2 cut(s) 676, 909
MaeIII GTNAC 2 cut(s) 483, 744
MalI GATC 9 cut(s) 56, 207, 212, 473, 542, 576, 602, 672, 801
MboI GATC 9 cut(s) 54, 205, 210, 471, 540, 574, 600, 670, 799
MflI RGATCY 1 cut(s) 600
MhlI GDGCHC 2 cut(s) 180, 234
MluCI AATT 3 cut(s) 184, 273, 558
MlyI GAGTC 2 cut(s) 56, 77
Mph1103I ATGCAT 1 cut(s) 249
MseI TTAA 3 cut(s) 276, 587, 855
MslI CAYNNNNRTG 1 cut(s) 818
MspI CCGG 3 cut(s) 17, 237, 297
MspR9I CCNGG 4 cut(s) 238, 481, 520, 762
Mva1269I GAATGC 1 cut(s) 249
MvaI CCWGG 3 cut(s) 481, 520, 762
MwoI GCNNNNNNNGC 3 cut(s) 11, 79, 222
NciI CCSGG 1 cut(s) 238
NdeI CATATG 1 cut(s) 753
NdeII GATC 9 cut(s) 54, 205, 210, 471, 540, 574, 600, 670, 799
NlaIII CATG 3 cut(s) 491, 581, 941
NmuCI GTSAC 2 cut(s) 483, 744
NsbI TGCGCA 1 cut(s) 339
NsiI ATGCAT 1 cut(s) 249
NspV TTCGAA 1 cut(s) 464
PagI TCATGA 2 cut(s) 577, 937
PctI GAATGC 1 cut(s) 249
PfeI GAWTC 1 cut(s) 427
PfoI TCCNGGA 1 cut(s) 236
PkrI GCNGC 4 cut(s) 305, 342, 501, 595
Ple19I CGATCG 1 cut(s) 57
PleI GAGTC 2 cut(s) 56, 76
PpsI GAGTC 2 cut(s) 56, 76
Ppu21I YACGTR 1 cut(s) 910
PshAI GACNNNNGTC 1 cut(s) 654
PshBI ATTAAT 1 cut(s) 276
Psp124BI GAGCTC 1 cut(s) 180
Psp6I CCWGG 3 cut(s) 479, 518, 760
PspGI CCWGG 3 cut(s) 479, 518, 760
PstI CTGCAG 1 cut(s) 645
PsuI RGATCY 1 cut(s) 600
PvuI CGATCG 1 cut(s) 57
RsaI GTAC 5 cut(s) 131, 494, 704, 912, 917
RsaNI GTAC 5 cut(s) 130, 493, 703, 911, 916
RseI CAYNNNNRTG 1 cut(s) 818
SacI GAGCTC 1 cut(s) 180
SaqAI TTAA 3 cut(s) 276, 587, 855
SatI GCNGC 4 cut(s) 304, 341, 500, 594
Sau3AI GATC 9 cut(s) 54, 205, 210, 471, 540, 574, 600, 670, 799
SbfI CCTGCAGG 1 cut(s) 645
ScaI AGTACT 2 cut(s) 494, 704
SchI GAGTC 2 cut(s) 56, 77
ScrFI CCNGG 4 cut(s) 238, 481, 520, 762
SdaI CCTGCAGG 1 cut(s) 645
SduI GDGCHC 2 cut(s) 180, 234
SexAI ACCWGGT 1 cut(s) 760
SfaNI GCATC 1 cut(s) 156
SfcI CTRYAG 1 cut(s) 641
SfuI TTCGAA 1 cut(s) 464
SmiMI CAYNNNNRTG 1 cut(s) 818
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
SnaBI TACGTA 1 cut(s) 910
Sse8387I CCTGCAGG 1 cut(s) 645
Sse9I AATT 3 cut(s) 184, 273, 558
SsiI CCGC 4 cut(s) 30, 84, 500, 836
SstI GAGCTC 1 cut(s) 180
StyD4I CCNGG 4 cut(s) 236, 479, 518, 760
StyI CCWWGG 1 cut(s) 929
TaaI ACNGT 6 cut(s) 385, 437, 707, 915, 949, 971
TaiI ACGT 2 cut(s) 679, 912
TaqI TCGA 4 cut(s) 47, 53, 464, 568
TasI AATT 3 cut(s) 184, 273, 558
TatI WGTACW 2 cut(s) 492, 702
TauI GCSGC 1 cut(s) 502
TfiI GAWTC 1 cut(s) 427
Tru1I TTAA 3 cut(s) 276, 587, 855
Tru9I TTAA 3 cut(s) 276, 587, 855
TscAI CASTG 2 cut(s) 442, 964
TseFI GTSAC 2 cut(s) 483, 744
TseI GCWGC 3 cut(s) 303, 340, 593
Tsp45I GTSAC 2 cut(s) 483, 744
TspDTI ATGAA 4 cut(s) 440, 594, 843, 926
TspGWI ACGGA 1 cut(s) 587
TspRI CASTG 2 cut(s) 442, 964
VspI ATTAAT 1 cut(s) 276
XapI RAATTY 1 cut(s) 184
XcmI CCANNNNNNNNNTGG 1 cut(s) 758
ZrmI AGTACT 2 cut(s) 494, 704
Zsp2I ATGCAT 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.