Rh7AG360600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000649
Physical Location & Seq
Reverse (-)
46403169 .. 46406942
3774 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG360600.1

Sequence Viewer

Length: 390 bp
ATGGTTTTGTTGTTGTTTGAAAGAAGATTCGGTGAAGCCTGTAGCTCATATAGCTTTGATTTTCTTTATGAGTTTGAAACTGCTACAGAGACTCTGCTGCCAGGATTTGAGAGAGCAAAATATGGGAAGGACAGCTGCTGCGATTGGAGAGTGCAAGGCCTGCACAGAGACGCTACCCGACATGTTCATCGGGACGCGGCTCGGCATGTTCATCGGAGACACTGCTCCGGCATGTTGACTTTGACATCATTGACACCCGAAGGTGCCGTTGTGAGGAGGGCTTGCAACAGAAAAGAAGAGGTGGTGGAGAGTGATGGAATAAGGAGAGGGCAGTATGAGAGGAAATTCAAAGCTAGTGTCATCAAAGCTAGTGTTTCTTTTACAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

14.86

Weight (kDa)

9.12

Isoelectric Point (pI)

47.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000649)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33840
fragaria_vesca FvH4_2g00190 FvH4_4g18133 FvH4_4g36450 FvH4_5g02490 FvH4_5g35150 FvH4_6g35840
malus_domestica MD04G1034100.v1.1 MD06G1084100.v1.1
prunus_persica Prupe.2G139100_v2.0.a1 Prupe.5G096900_v2.0.a1 Prupe.5G096900_v2.0.a1 Prupe.5G100500_v2.0.a1 Prupe.5G100500_v2.0.a1 Prupe.5G100500_v2.0.a1
pyrus_communis pycom04g02850
rosa_chinensis RchiOBHm_Chr1g0324941 RchiOBHm_Chr1g0340751 RchiOBHm_Chr2g0133721 RchiOBHm_Chr2g0153921 RchiOBHm_Chr4g0396761 RchiOBHm_Chr4g0414291 RchiOBHm_Chr4g0429871 RchiOBHm_Chr4g0446211 RchiOBHm_Chr5g0057181 RchiOBHm_Chr5g0057391 RchiOBHm_Chr5g0077561 RchiOBHm_Chr6g0307121 RchiOBHm_Chr7g0197611
rosa_laevigata RLG00000003922 RLG00000005681 RLG00000017313 RLG00000029149 RLG00000035152
rosa_multiflora Rmu_co8043936.1_g000001 Rmu_sc0001164.1_g000009 Rmu_sc0001334.1_g000004 Rmu_sc0004952.1_g000011 Rmu_sc0013154.1_g000007 Rmu_sc0017650.1_g000006 Rmu_sc0018062.1_g000003
rosa_roxburghii Rroxscaffold_1G00023030 Rroxscaffold_2G00094650 Rroxscaffold_3G00223000 Rroxscaffold_3G00232150 Rroxscaffold_3G00248030 Rroxscaffold_3G00248040 Rroxscaffold_3G00258320
rosa_rugosa Rorug04G0184600 Rorug04G0368500 Rorug05G0306000 Rorug05G0307100 Rorug07G0041900
rosa_samantha Rh2CG164400 Rh2DG389300 Rh3AG306800 Rh4AG430600 Rh4BG440000 Rh4CG457300 Rh4DG438500 Rh5AG375500 Rh5BG386300 Rh5CG409700 Rh5DG400300 Rh6CG481100 Rh7AG166300 Rh7AG360600 Rh7BG168400 Rh7CG174700 Rh7DG168000 Rh7DG387600
rosa_wichuraiana Rw2G022790 Rw4G036780 Rw5G035320 Rw5G035460 Rw7G014480 Rw7G038030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 263
AccII CGCG 1 cut(s) 197
AciI CCGC 1 cut(s) 197
AcsI RAATTY 1 cut(s) 344
AfiI CCNNNNNNNGG 1 cut(s) 273
AflIII ACRYGT 1 cut(s) 181
AgsI TTSAA 3 cut(s) 20, 77, 349
AjnI CCWGG 1 cut(s) 100
AluBI AGCT 5 cut(s) 45, 54, 135, 353, 368
AluI AGCT 5 cut(s) 45, 54, 135, 353, 368
Alw26I GTCTC 3 cut(s) 83, 162, 211
AlwNI CAGNNNCTG 1 cut(s) 138
AoxI GGCC 1 cut(s) 157
ApeKI GCWGC 3 cut(s) 97, 135, 138
ApoI RAATTY 1 cut(s) 344
ArsI GACNNNNNNTTYG 2 cut(s) 342, 374
AsuHPI GGTGA 1 cut(s) 44
BanI GGYRCC 1 cut(s) 263
BbvI GCAGC 3 cut(s) 84, 122, 125
BccI CCATC 1 cut(s) 308
BceAI ACGGC 1 cut(s) 251
BcgI CGANNNNNNTGC 2 cut(s) 194, 228
BciT130I CCWGG 1 cut(s) 102
BcoDI GTCTC 3 cut(s) 83, 162, 211
BfaI CTAG 2 cut(s) 354, 369
BfmI CTRYAG 2 cut(s) 40, 84
BisI GCNGC 4 cut(s) 98, 136, 139, 198
BlsI GCNGC 4 cut(s) 99, 137, 140, 199
Bme1390I CCNGG 1 cut(s) 102
BmiI GGNNCC 1 cut(s) 265
BmrFI CCNGG 1 cut(s) 102
Bsc4I CCNNNNNNNGG 1 cut(s) 273
BseBI CCWGG 1 cut(s) 102
BseLI CCNNNNNNNGG 1 cut(s) 273
BseRI GAGGAG 1 cut(s) 289
BseXI GCAGC 3 cut(s) 84, 122, 125
BsgI GTGCAG 1 cut(s) 146
Bsh1236I CGCG 1 cut(s) 197
BshFI GGCC 1 cut(s) 159
BshNI GGYRCC 1 cut(s) 263
BsiSI CCGG 1 cut(s) 228
BslFI GGGAC 1 cut(s) 206
BslI CCNNNNNNNGG 1 cut(s) 273
BsmAI GTCTC 3 cut(s) 83, 162, 211
BsmBI CGTCTC 1 cut(s) 162
BsmFI GGGAC 1 cut(s) 206
BsnI GGCC 1 cut(s) 159
BspACI CCGC 1 cut(s) 197
BspANI GGCC 1 cut(s) 159
BspFNI CGCG 1 cut(s) 197
BspLI GGNNCC 1 cut(s) 265
BspT107I GGYRCC 1 cut(s) 263
Bst2UI CCWGG 1 cut(s) 102
Bst6I CTCTTC 1 cut(s) 291
BstAPI GCANNNNNTGC 1 cut(s) 160
BstC8I GCNNGC 2 cut(s) 161, 283
BstFNI CGCG 1 cut(s) 197
BstMAI GTCTC 3 cut(s) 83, 162, 211
BstMWI GCNNNNNNNGC 2 cut(s) 51, 160
BstNI CCWGG 1 cut(s) 102
BstNSI RCATGY 3 cut(s) 185, 209, 235
BstSCI CCNGG 1 cut(s) 100
BstSFI CTRYAG 2 cut(s) 40, 84
BstUI CGCG 1 cut(s) 197
BstV1I GCAGC 3 cut(s) 84, 122, 125
BsuRI GGCC 1 cut(s) 159
BtsI GCAGTG 1 cut(s) 220
BtsIMutI CAGTG 1 cut(s) 220
Cac8I GCNNGC 2 cut(s) 161, 283
CaiI CAGNNNCTG 1 cut(s) 138
CseI GACGC 2 cut(s) 179, 203
CviAII CATG 3 cut(s) 182, 206, 232
CviJI RGCY 9 cut(s) 38, 45, 54, 135, 159, 200, 281, 353, 368
CviKI_1 RGCY 9 cut(s) 38, 45, 54, 135, 159, 200, 281, 353, 368
Eam1104I CTCTTC 1 cut(s) 291
EarI CTCTTC 1 cut(s) 291
Eco147I AGGCCT 1 cut(s) 159
EcoRII CCWGG 1 cut(s) 100
Esp3I CGTCTC 1 cut(s) 162
FaeI CATG 3 cut(s) 185, 209, 235
FaiI YATR 8 cut(s) 49, 51, 69, 123, 183, 207, 233, 336
FaqI GGGAC 1 cut(s) 206
FatI CATG 3 cut(s) 181, 205, 231
Fnu4HI GCNGC 4 cut(s) 98, 136, 139, 198
Fsp4HI GCNGC 4 cut(s) 98, 136, 139, 198
FspBI CTAG 2 cut(s) 354, 369
GluI GCNGC 4 cut(s) 98, 136, 139, 198
HaeIII GGCC 1 cut(s) 159
HapII CCGG 1 cut(s) 228
HgaI GACGC 2 cut(s) 179, 203
Hin1II CATG 3 cut(s) 185, 209, 235
HincII GTYRAC 1 cut(s) 237
HindII GTYRAC 1 cut(s) 237
HinfI GANTC 2 cut(s) 27, 91
HpaII CCGG 1 cut(s) 228
HphI GGTGA 1 cut(s) 44
Hpy166II GTNNAC 1 cut(s) 237
Hpy188I TCNGA 1 cut(s) 216
Hpy188III TCNNGA 1 cut(s) 191
Hpy8I GTNNAC 1 cut(s) 237
HpyAV CCTTC 2 cut(s) 121, 254
HpyCH4V TGCA 3 cut(s) 154, 163, 285
HpyF10VI GCNNNNNNNGC 2 cut(s) 51, 160
Hsp92II CATG 3 cut(s) 185, 209, 235
LmnI GCTCC 1 cut(s) 230
LpnPI CCDG 5 cut(s) 52, 87, 114, 173, 241
Lsp1109I GCAGC 3 cut(s) 84, 122, 125
MaeI CTAG 2 cut(s) 354, 369
MboII GAAGA 2 cut(s) 36, 308
MluCI AATT 1 cut(s) 344
MlyI GAGTC 1 cut(s) 85
MnlI CCTC 5 cut(s) 267, 270, 292, 320, 333
MspA1I CMGCKG 1 cut(s) 135
MspI CCGG 1 cut(s) 228
MspR9I CCNGG 1 cut(s) 102
MvaI CCWGG 1 cut(s) 102
MvnI CGCG 1 cut(s) 197
MwoI GCNNNNNNNGC 2 cut(s) 51, 160
NlaIII CATG 3 cut(s) 185, 209, 235
NlaIV GGNNCC 1 cut(s) 265
NmeAIII GCCGAG 1 cut(s) 181
NspI RCATGY 3 cut(s) 185, 209, 235
PceI AGGCCT 1 cut(s) 159
PciI ACATGT 1 cut(s) 181
PfeI GAWTC 1 cut(s) 27
PkrI GCNGC 4 cut(s) 99, 137, 140, 199
PleI GAGTC 1 cut(s) 85
PpsI GAGTC 1 cut(s) 85
PscI ACATGT 1 cut(s) 181
Psp6I CCWGG 1 cut(s) 100
PspGI CCWGG 1 cut(s) 100
PspN4I GGNNCC 1 cut(s) 265
PstNI CAGNNNCTG 1 cut(s) 138
PvuII CAGCTG 1 cut(s) 135
SatI GCNGC 4 cut(s) 98, 136, 139, 198
SchI GAGTC 1 cut(s) 85
ScrFI CCNGG 1 cut(s) 102
SetI ASST 7 cut(s) 47, 56, 137, 265, 303, 355, 370
SfcI CTRYAG 2 cut(s) 40, 84
Sse9I AATT 1 cut(s) 344
SseBI AGGCCT 1 cut(s) 159
SsiI CCGC 1 cut(s) 197
SspMI CTAG 2 cut(s) 354, 369
StuI AGGCCT 1 cut(s) 159
StyD4I CCNGG 1 cut(s) 100
TasI AATT 1 cut(s) 344
TauI GCSGC 1 cut(s) 200
TfiI GAWTC 1 cut(s) 27
TscAI CASTG 1 cut(s) 227
TseI GCWGC 3 cut(s) 97, 135, 138
TspDTI ATGAA 2 cut(s) 176, 200
TspRI CASTG 1 cut(s) 227
XapI RAATTY 1 cut(s) 344
XceI RCATGY 3 cut(s) 185, 209, 235
XspI CTAG 2 cut(s) 354, 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.