RchiOBHm_Chr5g0077561

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000649
Physical Location & Seq
Reverse (-)
83449624 .. 83450635
1012 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35213

Sequence Viewer

Length: 210 bp
ATGCTCGTCGGAAGCGCTGCTCCGGCATGGCTCATCGGAGGCGCTGCTCCGGCATGGCTCATCGGGACGCTGCCCGGCATGGTCATCGGGACGCTGCCCGGCATGTTTCATCGGGACGCTGCCCGGCATGGTCATCGGAGGCGCTGCTCCGGCATGGTATTTTTGTTCTTTTGTTTTTACTTTGGTATGGCCTCGTTGAAAGGCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

69

Amino Acids

7.4

Weight (kDa)

10.81

Isoelectric Point (pI)

48.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000649)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33840
fragaria_vesca FvH4_2g00190 FvH4_4g18133 FvH4_4g36450 FvH4_5g02490 FvH4_5g35150 FvH4_6g35840
malus_domestica MD04G1034100.v1.1 MD06G1084100.v1.1
prunus_persica Prupe.2G139100_v2.0.a1 Prupe.5G096900_v2.0.a1 Prupe.5G096900_v2.0.a1 Prupe.5G100500_v2.0.a1 Prupe.5G100500_v2.0.a1 Prupe.5G100500_v2.0.a1
pyrus_communis pycom04g02850
rosa_chinensis RchiOBHm_Chr1g0324941 RchiOBHm_Chr1g0340751 RchiOBHm_Chr2g0133721 RchiOBHm_Chr2g0153921 RchiOBHm_Chr4g0396761 RchiOBHm_Chr4g0414291 RchiOBHm_Chr4g0429871 RchiOBHm_Chr4g0446211 RchiOBHm_Chr5g0057181 RchiOBHm_Chr5g0057391 RchiOBHm_Chr5g0077561 RchiOBHm_Chr6g0307121 RchiOBHm_Chr7g0197611
rosa_laevigata RLG00000003922 RLG00000005681 RLG00000017313 RLG00000029149 RLG00000035152
rosa_multiflora Rmu_co8043936.1_g000001 Rmu_sc0001164.1_g000009 Rmu_sc0001334.1_g000004 Rmu_sc0004952.1_g000011 Rmu_sc0013154.1_g000007 Rmu_sc0017650.1_g000006 Rmu_sc0018062.1_g000003
rosa_roxburghii Rroxscaffold_1G00023030 Rroxscaffold_2G00094650 Rroxscaffold_3G00223000 Rroxscaffold_3G00232150 Rroxscaffold_3G00248030 Rroxscaffold_3G00248040 Rroxscaffold_3G00258320
rosa_rugosa Rorug04G0184600 Rorug04G0368500 Rorug05G0306000 Rorug05G0307100 Rorug07G0041900
rosa_samantha Rh2CG164400 Rh2DG389300 Rh3AG306800 Rh4AG430600 Rh4BG440000 Rh4CG457300 Rh4DG438500 Rh5AG375500 Rh5BG386300 Rh5CG409700 Rh5DG400300 Rh6CG481100 Rh7AG166300 Rh7AG360600 Rh7BG168400 Rh7CG174700 Rh7DG168000 Rh7DG387600
rosa_wichuraiana Rw2G022790 Rw4G036780 Rw5G035320 Rw5G035460 Rw7G014480 Rw7G038030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfeI AGCGCT 1 cut(s) 16
AgsI TTSAA 1 cut(s) 199
Aor51HI AGCGCT 1 cut(s) 16
AoxI GGCC 1 cut(s) 189
ApeKI GCWGC 6 cut(s) 17, 44, 70, 94, 119, 144
AspLEI GCGC 3 cut(s) 17, 44, 144
AsuC2I CCSGG 3 cut(s) 75, 99, 124
BbvI GCAGC 6 cut(s) 4, 31, 57, 81, 106, 131
BcgI CGANNNNNNTGC 4 cut(s) 67, 101, 116, 150
BcnI CCSGG 3 cut(s) 75, 99, 124
BfoI RGCGCY 3 cut(s) 18, 45, 145
BisI GCNGC 6 cut(s) 18, 45, 71, 95, 120, 145
BlsI GCNGC 6 cut(s) 19, 46, 72, 96, 121, 146
Bme1390I CCNGG 3 cut(s) 75, 99, 124
BmrFI CCNGG 3 cut(s) 75, 99, 124
BpuMI CCSGG 3 cut(s) 75, 99, 124
BseXI GCAGC 6 cut(s) 4, 31, 57, 81, 106, 131
BshFI GGCC 1 cut(s) 191
BsiSI CCGG 6 cut(s) 23, 50, 75, 99, 124, 150
BslFI GGGAC 3 cut(s) 79, 103, 128
BsmFI GGGAC 3 cut(s) 79, 103, 128
BsnI GGCC 1 cut(s) 191
BspANI GGCC 1 cut(s) 191
BstH2I RGCGCY 3 cut(s) 18, 45, 145
BstHHI GCGC 3 cut(s) 17, 44, 144
BstMWI GCNNNNNNNGC 3 cut(s) 23, 50, 150
BstNSI RCATGY 1 cut(s) 106
BstSCI CCNGG 3 cut(s) 73, 97, 122
BstV1I GCAGC 6 cut(s) 4, 31, 57, 81, 106, 131
BsuRI GGCC 1 cut(s) 191
CfoI GCGC 3 cut(s) 17, 44, 144
CseI GACGC 3 cut(s) 76, 100, 125
CviAII CATG 6 cut(s) 27, 54, 79, 103, 128, 154
CviJI RGCY 4 cut(s) 31, 58, 191, 204
CviKI_1 RGCY 4 cut(s) 31, 58, 191, 204
Eco47III AGCGCT 1 cut(s) 16
FaeI CATG 6 cut(s) 30, 57, 82, 106, 131, 157
FaiI YATR 7 cut(s) 28, 55, 80, 104, 129, 155, 188
FaqI GGGAC 3 cut(s) 79, 103, 128
FatI CATG 6 cut(s) 26, 53, 78, 102, 127, 153
Fnu4HI GCNGC 6 cut(s) 18, 45, 71, 95, 120, 145
Fsp4HI GCNGC 6 cut(s) 18, 45, 71, 95, 120, 145
GlaI GCGC 3 cut(s) 16, 43, 143
GluI GCNGC 6 cut(s) 18, 45, 71, 95, 120, 145
HaeII RGCGCY 3 cut(s) 18, 45, 145
HaeIII GGCC 1 cut(s) 191
HapII CCGG 6 cut(s) 23, 50, 75, 99, 124, 150
HgaI GACGC 3 cut(s) 76, 100, 125
HhaI GCGC 3 cut(s) 17, 44, 144
Hin1II CATG 6 cut(s) 30, 57, 82, 106, 131, 157
Hin6I GCGC 3 cut(s) 15, 42, 142
HinP1I GCGC 3 cut(s) 15, 42, 142
HpaII CCGG 6 cut(s) 23, 50, 75, 99, 124, 150
Hpy188I TCNGA 3 cut(s) 11, 38, 138
Hpy188III TCNNGA 3 cut(s) 64, 88, 113
Hpy99I CGWCG 1 cut(s) 11
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 50, 150
Hsp92II CATG 6 cut(s) 30, 57, 82, 106, 131, 157
HspAI GCGC 3 cut(s) 15, 42, 142
LmnI GCTCC 3 cut(s) 25, 52, 152
LpnPI CCDG 6 cut(s) 36, 63, 88, 112, 137, 163
Lsp1109I GCAGC 6 cut(s) 4, 31, 57, 81, 106, 131
MnlI CCTC 3 cut(s) 32, 132, 202
MspI CCGG 6 cut(s) 23, 50, 75, 99, 124, 150
MspR9I CCNGG 3 cut(s) 75, 99, 124
MwoI GCNNNNNNNGC 3 cut(s) 23, 50, 150
NciI CCSGG 3 cut(s) 75, 99, 124
NlaIII CATG 6 cut(s) 30, 57, 82, 106, 131, 157
NspI RCATGY 1 cut(s) 106
PkrI GCNGC 6 cut(s) 19, 46, 72, 96, 121, 146
SatI GCNGC 6 cut(s) 18, 45, 71, 95, 120, 145
ScrFI CCNGG 3 cut(s) 75, 99, 124
StyD4I CCNGG 3 cut(s) 73, 97, 122
TseI GCWGC 6 cut(s) 17, 44, 70, 94, 119, 144
TspDTI ATGAA 1 cut(s) 98
XceI RCATGY 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.