FvH4_2g13961

receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000258
Physical Location & Seq
Reverse (-)
12291405 .. 12292552
1148 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g13961.t1

Sequence Viewer

Length: 1074 bp
ATGATGTTCTATCTGACCACTCTGAATCTGGCAAGGTTGCTGACTGAGAACGCTCCTAAGCTCAAAGAGGATGAGCAAAATGATGAGGAAAAGATTGCCGCTGTGAATGCATGGAATAGTTCCGACTATCTATGCAGGAACTATATCATGAACGGCTTGGCTGACTCTTTGTACAATGTGTACATTAGCATGGGAACGGCTAAGGAGCTGTGGGAATCCCTTGAGAAAAAATATAAAACAAAGGATGCCGGTGCCAAGAAATTTATAGTTGGCCAGTTCCTTGATTATATGGTGGATTCCAAGACTGTGATGAGTGGCATGTGCTATTTGCCACCAGCTTGGAAAGACTTTAAGAATTATCTAAAGCACAAGAGAAAGGAAATGAGCATGGAAGATCTGGAGGTCAGGCTTTGTATTGAAGAAGACAACCGAGGATTTGAAAAGAAGGCATGGGTCGGTGGCTACTCCGCCAAGACAAATATTGTGGAACATGGTCAAAGCTCCAAGACCAAAAAGTTCAAAAATCAAGGGTCCAAGCTGGGACCAAGAAGAGGTATTGCCAAGAAGGCTAGGTTTGAAGGCAAGTGCTTCAATTGTGACAAGACTGGTCACAAAGCTGTTGACTGCAACAAGCTAAAGAAAAAGAAGAGCAAGGAAGCTTACATGATTGAAGATGTCACAAGAGATGTCTCTGACAGTAACCTCTCTGTTGTGGTCTCAGAGATGAACATGGTGGGCTCAAACCCAAAGGAGTGGTGGCTCGATACTGGAGCTACTAGCCATGTTTGTGTTGATAAGAAGATGTTCTCTAAATTTGAGCCTACCACTGATGGGGAGATAATGTACATGGGGAACTTAACCACATCTGTCATTGAGGGCAAGGGTAATGTGGTTTTGAAGATGACCTCTGGGAAGGAACTGACTCTGAACAACATTTTGTATGTTCCTGATATCCGTAAGAACCTTATCTTTGGTGCCCTGCTGAACACTTATGGTTTTCGCATAGTTATAAAGCCTGACAAGGTTGTTTTGTCCAAGAGTGGAATGTATGTGGGTAAGGCTAGGGTTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 Malectin_like

Protein Analysis

358

Amino Acids

40.52

Weight (kDa)

9.26

Isoelectric Point (pI)

31.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_2 PF14223 1 - 105 1.4e-12 gag-polypeptide of LTR copia-type
Pol_BBD PF22936 252 - 331 5.1e-23 Pol polyprotein, beta-barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000258)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00980
fragaria_vesca FvH4_1g25682 FvH4_2g13961 FvH4_2g20162 FvH4_2g24753 FvH4_3g12191 FvH4_3g12632 FvH4_3g16171 FvH4_4g05871 FvH4_4g05873 FvH4_4g10121 FvH4_4g15488 FvH4_4g23911 FvH4_4g27782 FvH4_5g08912 FvH4_5g23001 FvH4_5g24552 FvH4_5g32801 FvH4_5g32802 FvH4_6g05093 FvH4_6g19722 FvH4_6g20391 FvH4_6g33792 FvH4_7g01381 FvH4_7g16761 FvH4_7g16761 FvH4_7g16761
malus_domestica MD01G1082500.v1.1 MD15G1436400.v1.1
prunus_persica Prupe.2G021400_v2.0.a1 Prupe.2G052400_v2.0.a1 Prupe.2G065000_v2.0.a1 Prupe.2G187700_v2.0.a1 Prupe.2G187800_v2.0.a1 Prupe.2G189900_v2.0.a1 Prupe.2G191300_v2.0.a1 Prupe.2G191700_v2.0.a1 Prupe.4G265600_v2.0.a1 Prupe.7G014200_v2.0.a1 Prupe.7G039000_v2.0.a1
pyrus_communis pycom01g05590 pycom01g05910 pycom02g12230 pycom02g25840 pycom03g15580 pycom04g04480 pycom05g09230 pycom05g23350 pycom05g23360 pycom07g08380 pycom09g01980 pycom09g01990 pycom11g18190 pycom11g18200 pycom11g21580 pycom13g04160 pycom15g25800 pycom16g16210 pycom16g17230 pycom16g24560 pycom16g25700 pycom17g11020
rosa_chinensis RchiOBHm_Chr1g0359981 RchiOBHm_Chr2g0151961 RchiOBHm_Chr2g0171331 RchiOBHm_Chr5g0081471 RchiOBHm_Chr6g0283031 RchiOBHm_Chr7g0197111 RchiOBHm_Chr7g0222601
rosa_laevigata RLG00000027843 RLG00000027845 RLG00000030065
rosa_multiflora Rmu_sc0000381.1_g000031 Rmu_sc0001179.1_g000035 Rmu_sc0001616.1_g000046 Rmu_sc0001851.1_g000032 Rmu_sc0002152.1_g000013 Rmu_sc0004031.1_g000015 Rmu_sc0004645.1_g000003 Rmu_sc0007393.1_g000001 Rmu_sc0008949.1_g000003 Rmu_sc0009799.1_g000011 Rmu_sc0011614.1_g000001 Rmu_sc0011699.1_g000009 Rmu_sc0019280.1_g000001 Rmu_sc0023984.1_g000001 Rmu_ssc0000050.1_g000036
rosa_roxburghii Rroxscaffold_1G00022650 Rroxscaffold_1G00033480 Rroxscaffold_3G00270250 Rroxscaffold_4G00296600 Rroxscaffold_4G00296760 Rroxscaffold_6G00409840
rosa_rugosa Rorug01G0273800 Rorug01G0273900 Rorug01G0274000
rosa_samantha Rh1AG287300 Rh1AG288100 Rh1BG253000 Rh1BG253500 Rh1BG399800 Rh1CG270400 Rh1CG271000 Rh1DG282000 Rh1DG282500 Rh4DG126500 Rh5DG194600 Rh5DG461100
rosa_wichuraiana Rw0G009130 Rw1G002590 Rw1G008490 Rw1G012210 Rw1G014290 Rw1G014490 Rw1G025510 Rw2G025840 Rw2G026170 Rw2G036510 Rw3G003050 Rw4G009270 Rw5G002350 Rw5G013930 Rw5G019500 Rw5G025890 Rw5G029960 Rw5G032360 Rw6G009890 Rw6G015670 Rw6G015860 Rw7G010030 Rw7G032600 Rw7G032770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1010
AccB1I GGYRCC 2 cut(s) 251, 974
AciI CCGC 2 cut(s) 99, 468
AcoI YGGCCR 1 cut(s) 271
AcsI RAATTY 2 cut(s) 260, 812
AfaI GTAC 3 cut(s) 173, 182, 845
AfiI CCNNNNNNNGG 2 cut(s) 551, 831
AgsI TTSAA 7 cut(s) 419, 440, 520, 578, 592, 671, 898
AluBI AGCT 9 cut(s) 61, 208, 338, 501, 538, 617, 634, 659, 773
AluI AGCT 9 cut(s) 61, 208, 338, 501, 538, 617, 634, 659, 773
Alw26I GTCTC 2 cut(s) 694, 721
AoxI GGCC 1 cut(s) 271
ApoI RAATTY 2 cut(s) 260, 812
Asp700I GAANNNNTTC 1 cut(s) 803
AspS9I GGNCC 2 cut(s) 531, 542
AvaII GGWCC 2 cut(s) 531, 542
BaeGI GKGCMC 1 cut(s) 979
BalI TGGCCA 1 cut(s) 273
BanI GGYRCC 2 cut(s) 251, 974
BanII GRGCYC 1 cut(s) 740
BbsI GAAGAC 1 cut(s) 429
BccI CCATC 1 cut(s) 824
BceAI ACGGC 2 cut(s) 169, 213
BcoDI GTCTC 2 cut(s) 694, 721
BfaI CTAG 3 cut(s) 570, 777, 1062
BglI GCCNNNNNGGC 1 cut(s) 566
BglII AGATCT 1 cut(s) 394
BisI GCNGC 1 cut(s) 99
BlsI GCNGC 1 cut(s) 100
Bme18I GGWCC 2 cut(s) 531, 542
BmgT120I GGNCC 2 cut(s) 531, 542
BmiI GGNNCC 4 cut(s) 253, 532, 543, 976
BmsI GCATC 1 cut(s) 235
BpiI GAAGAC 1 cut(s) 429
BpmI CTGGAG 2 cut(s) 419, 789
Bpu10I CCTNAGC 2 cut(s) 57, 201
BpuEI CTTGAG 1 cut(s) 242
BsaI GGTCTC 1 cut(s) 721
BsaJI CCNNGG 1 cut(s) 430
BsaXI ACNNNNNCTCC 2 cut(s) 827, 857
Bsc4I CCNNNNNNNGG 2 cut(s) 551, 831
Bse118I RCCGGY 1 cut(s) 248
Bse1I ACTGG 3 cut(s) 274, 610, 772
BseDI CCNNGG 1 cut(s) 430
BseGI GGATG 2 cut(s) 76, 250
BseLI CCNNNNNNNGG 2 cut(s) 551, 831
BseMII CTCAG 2 cut(s) 36, 732
BseNI ACTGG 3 cut(s) 274, 610, 772
BseSI GKGCMC 1 cut(s) 979
BseYI CCCAGC 1 cut(s) 538
BshFI GGCC 1 cut(s) 273
BshNI GGYRCC 2 cut(s) 251, 974
BsiSI CCGG 1 cut(s) 249
BslFI GGGAC 1 cut(s) 555
BslI CCNNNNNNNGG 2 cut(s) 551, 831
BsmAI GTCTC 2 cut(s) 694, 721
BsmFI GGGAC 1 cut(s) 555
BsmI GAATGC 1 cut(s) 112
BsnI GGCC 1 cut(s) 273
Bso31I GGTCTC 1 cut(s) 721
Bsp1286I GDGCHC 2 cut(s) 740, 979
Bsp1407I TGTACA 3 cut(s) 171, 180, 843
Bsp143I GATC 1 cut(s) 394
BspACI CCGC 2 cut(s) 99, 468
BspANI GGCC 1 cut(s) 273
BspCNI CTCAG 2 cut(s) 37, 731
BspHI TCATGA 1 cut(s) 147
BspLI GGNNCC 4 cut(s) 253, 532, 543, 976
BspQI GCTCTTC 1 cut(s) 641
BspT107I GGYRCC 2 cut(s) 251, 974
BspTNI GGTCTC 1 cut(s) 721
BsrFI RCCGGY 1 cut(s) 248
BsrGI TGTACA 3 cut(s) 171, 180, 843
BsrI ACTGG 3 cut(s) 274, 610, 772
BssAI RCCGGY 1 cut(s) 248
BssECI CCNNGG 1 cut(s) 430
BssMI GATC 1 cut(s) 394
Bst4CI ACNGT 2 cut(s) 307, 698
Bst6I CTCTTC 2 cut(s) 544, 641
BstAUI TGTACA 3 cut(s) 171, 180, 843
BstDEI CTNAG 4 cut(s) 45, 57, 201, 718
BstF5I GGATG 2 cut(s) 76, 250
BstKTI GATC 1 cut(s) 397
BstMAI GTCTC 2 cut(s) 694, 721
BstMBI GATC 1 cut(s) 394
BstMWI GCNNNNNNNGC 2 cut(s) 107, 566
BstNSI RCATGY 1 cut(s) 322
BstSLI GKGCMC 1 cut(s) 979
BstV2I GAAGAC 1 cut(s) 429
BstX2I RGATCY 1 cut(s) 394
BstXI CCANNNNNNTGG 2 cut(s) 339, 753
BstYI RGATCY 1 cut(s) 394
BsuRI GGCC 1 cut(s) 273
BtsCI GGATG 2 cut(s) 76, 250
BtsIMutI CAGTG 1 cut(s) 825
CciI TCATGA 1 cut(s) 147
Cfr10I RCCGGY 1 cut(s) 248
Cfr13I GGNCC 2 cut(s) 531, 542
Csp6I GTAC 3 cut(s) 172, 181, 844
CspCI CAANNNNNGTGG 2 cut(s) 465, 500
CviQI GTAC 3 cut(s) 172, 181, 844
DdeI CTNAG 4 cut(s) 45, 57, 201, 718
DpnI GATC 1 cut(s) 396
DpnII GATC 1 cut(s) 394
EaeI YGGCCR 1 cut(s) 271
Eam1104I CTCTTC 2 cut(s) 544, 641
EarI CTCTTC 2 cut(s) 544, 641
EciI GGCGGA 1 cut(s) 457
Eco24I GRGCYC 1 cut(s) 740
Eco31I GGTCTC 1 cut(s) 721
Eco32I GATATC 1 cut(s) 952
Eco47I GGWCC 2 cut(s) 531, 542
EcoRV GATATC 1 cut(s) 952
EcoT22I ATGCAT 1 cut(s) 112
EcoT38I GRGCYC 1 cut(s) 740
FaqI GGGAC 1 cut(s) 555
Fnu4HI GCNGC 1 cut(s) 99
FokI GGATG 2 cut(s) 83, 257
FriOI GRGCYC 1 cut(s) 740
Fsp4HI GCNGC 1 cut(s) 99
FspBI CTAG 3 cut(s) 570, 777, 1062
GluI GCNGC 1 cut(s) 99
GsaI CCCAGC 1 cut(s) 542
GsuI CTGGAG 2 cut(s) 419, 789
HaeIII GGCC 1 cut(s) 273
HapII CCGG 1 cut(s) 249
HincII GTYRAC 1 cut(s) 622
HindII GTYRAC 1 cut(s) 622
HindIII AAGCTT 1 cut(s) 657
HinfI GANTC 5 cut(s) 25, 164, 215, 296, 922
HpaII CCGG 1 cut(s) 249
Hpy166II GTNNAC 2 cut(s) 181, 622
Hpy188I TCNGA 6 cut(s) 15, 24, 124, 694, 721, 927
Hpy188III TCNNGA 3 cut(s) 148, 398, 947
Hpy8I GTNNAC 2 cut(s) 181, 622
HpyAV CCTTC 4 cut(s) 439, 559, 572, 907
HpyCH4III ACNGT 2 cut(s) 307, 698
HpyCH4V TGCA 3 cut(s) 110, 135, 627
HpyF10VI GCNNNNNNNGC 2 cut(s) 107, 566
HpyF3I CTNAG 4 cut(s) 45, 57, 201, 718
Kzo9I GATC 1 cut(s) 394
LguI GCTCTTC 1 cut(s) 641
LmnI GCTCC 4 cut(s) 58, 205, 506, 770
LweI GCATC 1 cut(s) 235
MaeI CTAG 3 cut(s) 570, 777, 1062
MaeIII GTNAC 4 cut(s) 596, 608, 676, 698
MalI GATC 1 cut(s) 396
MboI GATC 1 cut(s) 394
MboII GAAGA 8 cut(s) 404, 431, 434, 561, 658, 683, 811, 910
MfeI CAATTG 1 cut(s) 592
MflI RGATCY 1 cut(s) 394
MhlI GDGCHC 2 cut(s) 740, 979
MlsI TGGCCA 1 cut(s) 273
MluCI AATT 4 cut(s) 260, 355, 592, 812
MluNI TGGCCA 1 cut(s) 273
MlyI GAGTC 2 cut(s) 158, 916
MmeI TCCRAC 1 cut(s) 147
MnlI CCTC 8 cut(s) 61, 79, 394, 425, 545, 713, 868, 916
Mox20I TGGCCA 1 cut(s) 273
Mph1103I ATGCAT 1 cut(s) 112
MroXI GAANNNNTTC 1 cut(s) 803
MscI TGGCCA 1 cut(s) 273
MseI TTAA 2 cut(s) 351, 857
MslI CAYNNNNRTG 2 cut(s) 188, 786
Msp20I TGGCCA 1 cut(s) 273
MspA1I CMGCKG 1 cut(s) 101
MspI CCGG 1 cut(s) 249
MunI CAATTG 1 cut(s) 592
Mva1269I GAATGC 1 cut(s) 112
MwoI GCNNNNNNNGC 2 cut(s) 107, 566
NdeII GATC 1 cut(s) 394
NlaIV GGNNCC 4 cut(s) 253, 532, 543, 976
NmuCI GTSAC 3 cut(s) 596, 608, 676
NsiI ATGCAT 1 cut(s) 112
NspI RCATGY 1 cut(s) 322
PagI TCATGA 1 cut(s) 147
PciSI GCTCTTC 1 cut(s) 641
PctI GAATGC 1 cut(s) 112
PdmI GAANNNNTTC 1 cut(s) 803
PfeI GAWTC 3 cut(s) 25, 215, 296
PkrI GCNGC 1 cut(s) 100
PleI GAGTC 2 cut(s) 158, 916
PpsI GAGTC 2 cut(s) 158, 916
PsiI TTATAA 1 cut(s) 1010
PspFI CCCAGC 1 cut(s) 538
PspN4I GGNNCC 4 cut(s) 253, 532, 543, 976
PspPI GGNCC 2 cut(s) 531, 542
PsuI RGATCY 1 cut(s) 394
RsaI GTAC 3 cut(s) 173, 182, 845
RsaNI GTAC 3 cut(s) 172, 181, 844
RseI CAYNNNNRTG 2 cut(s) 188, 786
SapI GCTCTTC 1 cut(s) 641
SaqAI TTAA 2 cut(s) 351, 857
SatI GCNGC 1 cut(s) 99
Sau3AI GATC 1 cut(s) 394
Sau96I GGNCC 2 cut(s) 531, 542
SchI GAGTC 2 cut(s) 158, 916
SduI GDGCHC 2 cut(s) 740, 979
SfaNI GCATC 1 cut(s) 235
SinI GGWCC 2 cut(s) 531, 542
SmiMI CAYNNNNRTG 2 cut(s) 188, 786
SmlI CTYRAG 1 cut(s) 221
SmoI CTYRAG 1 cut(s) 221
Sse9I AATT 4 cut(s) 260, 355, 592, 812
SsiI CCGC 2 cut(s) 99, 468
SspI AATATT 1 cut(s) 481
SspMI CTAG 3 cut(s) 570, 777, 1062
TaaI ACNGT 2 cut(s) 307, 698
TaqI TCGA 1 cut(s) 762
TasI AATT 4 cut(s) 260, 355, 592, 812
TatI WGTACW 3 cut(s) 171, 180, 843
TauI GCSGC 1 cut(s) 101
TfiI GAWTC 3 cut(s) 25, 215, 296
Tru1I TTAA 2 cut(s) 351, 857
Tru9I TTAA 2 cut(s) 351, 857
TscAI CASTG 1 cut(s) 832
TseFI GTSAC 3 cut(s) 596, 608, 676
Tsp45I GTSAC 3 cut(s) 596, 608, 676
TspDTI ATGAA 2 cut(s) 164, 740
TspGWI ACGGA 1 cut(s) 944
TspRI CASTG 1 cut(s) 832
VpaK11BI GGWCC 2 cut(s) 531, 542
XapI RAATTY 2 cut(s) 260, 812
XceI RCATGY 1 cut(s) 322
XcmI CCANNNNNNNNNTGG 2 cut(s) 25, 753
XmnI GAANNNNTTC 1 cut(s) 803
XspI CTAG 3 cut(s) 570, 777, 1062
Zsp2I ATGCAT 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.