Rmu_sc0002152.1_g000013

receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002152.1
OG0000258
Physical Location & Seq
Reverse (-)
68453 .. 68892
440 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002152.1_g000013.1.cds

Sequence Viewer

Length: 342 bp
atggatcaatcggcgacagtcgctaaaaccgctcatgttgagaaaccaaagaagttcaagatagacttcaagagatggcaacagaaaatgttgttttatctcacaaccttgaatttggcacaagtaatctcgcaagagaagcctgtgccaatcctttttctcaggcgaggctacagttcgttaatcttttttctcacactgaagaggactaagaagtttatgaagaggagtacaaaattgaataagaaactggcaaagaaatatgagaatgacaaagaggatgaagaagatcaagaagaagccggtcaagataaggaggaagaggatgacacccaagactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8

Protein Analysis

113

Amino Acids

13.46

Weight (kDa)

9.2

Isoelectric Point (pI)

64.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000258)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00980
fragaria_vesca FvH4_1g25682 FvH4_2g13961 FvH4_2g20162 FvH4_2g24753 FvH4_3g12191 FvH4_3g12632 FvH4_3g16171 FvH4_4g05871 FvH4_4g05873 FvH4_4g10121 FvH4_4g15488 FvH4_4g23911 FvH4_4g27782 FvH4_5g08912 FvH4_5g23001 FvH4_5g24552 FvH4_5g32801 FvH4_5g32802 FvH4_6g05093 FvH4_6g19722 FvH4_6g20391 FvH4_6g33792 FvH4_7g01381 FvH4_7g16761 FvH4_7g16761 FvH4_7g16761
malus_domestica MD01G1082500.v1.1 MD15G1436400.v1.1
prunus_persica Prupe.2G021400_v2.0.a1 Prupe.2G052400_v2.0.a1 Prupe.2G065000_v2.0.a1 Prupe.2G187700_v2.0.a1 Prupe.2G187800_v2.0.a1 Prupe.2G189900_v2.0.a1 Prupe.2G191300_v2.0.a1 Prupe.2G191700_v2.0.a1 Prupe.4G265600_v2.0.a1 Prupe.7G014200_v2.0.a1 Prupe.7G039000_v2.0.a1
pyrus_communis pycom01g05590 pycom01g05910 pycom02g12230 pycom02g25840 pycom03g15580 pycom04g04480 pycom05g09230 pycom05g23350 pycom05g23360 pycom07g08380 pycom09g01980 pycom09g01990 pycom11g18190 pycom11g18200 pycom11g21580 pycom13g04160 pycom15g25800 pycom16g16210 pycom16g17230 pycom16g24560 pycom16g25700 pycom17g11020
rosa_chinensis RchiOBHm_Chr1g0359981 RchiOBHm_Chr2g0151961 RchiOBHm_Chr2g0171331 RchiOBHm_Chr5g0081471 RchiOBHm_Chr6g0283031 RchiOBHm_Chr7g0197111 RchiOBHm_Chr7g0222601
rosa_laevigata RLG00000027843 RLG00000027845 RLG00000030065
rosa_multiflora Rmu_sc0000381.1_g000031 Rmu_sc0001179.1_g000035 Rmu_sc0001616.1_g000046 Rmu_sc0001851.1_g000032 Rmu_sc0002152.1_g000013 Rmu_sc0004031.1_g000015 Rmu_sc0004645.1_g000003 Rmu_sc0007393.1_g000001 Rmu_sc0008949.1_g000003 Rmu_sc0009799.1_g000011 Rmu_sc0011614.1_g000001 Rmu_sc0011699.1_g000009 Rmu_sc0019280.1_g000001 Rmu_sc0023984.1_g000001 Rmu_ssc0000050.1_g000036
rosa_roxburghii Rroxscaffold_1G00022650 Rroxscaffold_1G00033480 Rroxscaffold_3G00270250 Rroxscaffold_4G00296600 Rroxscaffold_4G00296760 Rroxscaffold_6G00409840
rosa_rugosa Rorug01G0273800 Rorug01G0273900 Rorug01G0274000
rosa_samantha Rh1AG287300 Rh1AG288100 Rh1BG253000 Rh1BG253500 Rh1BG399800 Rh1CG270400 Rh1CG271000 Rh1DG282000 Rh1DG282500 Rh4DG126500 Rh5DG194600 Rh5DG461100
rosa_wichuraiana Rw0G009130 Rw1G002590 Rw1G008490 Rw1G012210 Rw1G014290 Rw1G014490 Rw1G025510 Rw2G025840 Rw2G026170 Rw2G036510 Rw3G003050 Rw4G009270 Rw5G002350 Rw5G013930 Rw5G019500 Rw5G025890 Rw5G029960 Rw5G032360 Rw6G009890 Rw6G015670 Rw6G015860 Rw7G010030 Rw7G032600 Rw7G032770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 32
AciI CCGC 1 cut(s) 30
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 1 cut(s) 112
AcuI CTGAAG 1 cut(s) 221
AfaI GTAC 1 cut(s) 232
AgsI TTSAA 4 cut(s) 58, 70, 112, 241
AlwI GGATC 1 cut(s) 12
ApoI RAATTY 1 cut(s) 112
BccI CCATC 1 cut(s) 69
BfmI CTRYAG 1 cut(s) 172
Bse118I RCCGGY 1 cut(s) 302
Bse1I ACTGG 1 cut(s) 255
BseGI GGATG 2 cut(s) 286, 331
BseMII CTCAG 1 cut(s) 175
BseNI ACTGG 1 cut(s) 255
BseRI GAGGAG 1 cut(s) 241
BsiSI CCGG 1 cut(s) 303
Bsp143I GATC 2 cut(s) 4, 289
BspACI CCGC 1 cut(s) 30
BspCNI CTCAG 1 cut(s) 174
BspPI GGATC 1 cut(s) 12
BsrBI CCGCTC 1 cut(s) 32
BsrFI RCCGGY 1 cut(s) 302
BsrI ACTGG 1 cut(s) 255
BssAI RCCGGY 1 cut(s) 302
BssMI GATC 2 cut(s) 4, 289
Bst4CI ACNGT 2 cut(s) 19, 176
Bst6I CTCTTC 3 cut(s) 197, 218, 315
BstDEI CTNAG 2 cut(s) 161, 210
BstF5I GGATG 2 cut(s) 286, 331
BstKTI GATC 2 cut(s) 7, 292
BstMBI GATC 2 cut(s) 4, 289
BstMWI GCNNNNNNNGC 3 cut(s) 20, 29, 139
BstSFI CTRYAG 1 cut(s) 172
BtsCI GGATG 2 cut(s) 286, 331
BtsIMutI CAGTG 1 cut(s) 197
Cfr10I RCCGGY 1 cut(s) 302
Csp6I GTAC 1 cut(s) 231
CviAII CATG 1 cut(s) 35
CviJI RGCY 3 cut(s) 142, 171, 302
CviKI_1 RGCY 3 cut(s) 142, 171, 302
CviQI GTAC 1 cut(s) 231
DdeI CTNAG 2 cut(s) 161, 210
DpnI GATC 2 cut(s) 6, 291
DpnII GATC 2 cut(s) 4, 289
Eam1104I CTCTTC 3 cut(s) 197, 218, 315
EarI CTCTTC 3 cut(s) 197, 218, 315
Eco57I CTGAAG 1 cut(s) 221
FaeI CATG 1 cut(s) 38
FaiI YATR 3 cut(s) 36, 221, 264
FalI AAGNNNNNCTT 2 cut(s) 50, 82
FatI CATG 1 cut(s) 34
FokI GGATG 2 cut(s) 293, 338
HapII CCGG 1 cut(s) 303
Hin1II CATG 1 cut(s) 38
HpaII CCGG 1 cut(s) 303
Hpy188III TCNNGA 4 cut(s) 58, 70, 293, 308
HpyCH4III ACNGT 2 cut(s) 19, 176
HpyF10VI GCNNNNNNNGC 3 cut(s) 20, 29, 139
HpyF3I CTNAG 2 cut(s) 161, 210
Hsp92II CATG 1 cut(s) 38
Kzo9I GATC 2 cut(s) 4, 289
LpnPI CCDG 4 cut(s) 148, 156, 236, 316
MalI GATC 2 cut(s) 6, 291
MbiI CCGCTC 1 cut(s) 32
MboI GATC 2 cut(s) 4, 289
MboII GAAGA 6 cut(s) 214, 235, 296, 299, 308, 332
MluCI AATT 2 cut(s) 112, 236
MnlI CCTC 6 cut(s) 161, 198, 219, 271, 310, 316
MseI TTAA 1 cut(s) 182
MspI CCGG 1 cut(s) 303
MwoI GCNNNNNNNGC 3 cut(s) 20, 29, 139
NdeII GATC 2 cut(s) 4, 289
NlaIII CATG 1 cut(s) 38
RsaI GTAC 1 cut(s) 232
RsaNI GTAC 1 cut(s) 231
SaqAI TTAA 1 cut(s) 182
Sau3AI GATC 2 cut(s) 4, 289
SetI ASST 1 cut(s) 110
SfcI CTRYAG 1 cut(s) 172
Sse9I AATT 2 cut(s) 112, 236
SsiI CCGC 1 cut(s) 30
TaaI ACNGT 2 cut(s) 19, 176
TasI AATT 2 cut(s) 112, 236
TatI WGTACW 1 cut(s) 230
Tru1I TTAA 1 cut(s) 182
Tru9I TTAA 1 cut(s) 182
TscAI CASTG 1 cut(s) 204
TspDTI ATGAA 2 cut(s) 236, 297
TspRI CASTG 1 cut(s) 204
XapI RAATTY 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.