Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0000258

Physical Location & Seq

Genomic Coordinates Forward (+)

1463205 .. 1463871

Gene Structure 667 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g01980.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGCAAGGAAGAACTTTATCAGAAGAAGGTTTTGGGCTGTTTTATCCTAGGGATAACATGGTGTTTGCAAATTGCTTGCACACTTTGGGTAGAGCCGCGAAACTTCTTAAAGAGAGCGACTTAGTCCACGACTCATCCCAAGAATCATTCACTACCCAAGGCTTCTACATTTTTCGGGAAAATCTTGTTGAAGAGCAATTGATTGCGATGATATCAGAAATCAACCTAGTTGATGGATCCGAAGGGTGGTGGGTGGACACTGGCGCTTCTCGCCATGTTTGCTATGATCGTTCCCTTTTCAAGACCTATTATGTGGCTGAGGGAAGGAAGGTGTTGTTGGGTGATTCGCACTCAATTAATGTTGCTGGTACTGGAAAGGTGGAGTTGAAGTTCACTTCTGGAAAAACCATGATACTAAAAGATGTGATGCACACTCCAGCGATAAGGAAGAATCTGGTCTCGGACTTTCTTCTCAACAAGGCTGGATTCACTCAAACGTTTGTAGCAGATACGTATACTCTTACTAAAAATGGGGTTTTTGTGGGAAAGGGATATGCTACTATGGAATGTTTAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000280 GO:0000910 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007112 GO:0007140 GO:0007275 GO:0007276 GO:0008150 GO:0008574 GO:0009524 GO:0009555 GO:0009987 GO:0015630 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0033206 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048285 GO:0048609 GO:0048856 GO:0051301 GO:0051321 GO:0051704 GO:0055046 GO:0061640 GO:0071840 GO:0080175 GO:0140013 GO:1903046 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

193

Amino Acids

21.47

Weight (kDa)

6.2

Isoelectric Point (pI)

32.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000258)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00980
fragaria_vesca	FvH4_1g25682 FvH4_2g13961 FvH4_2g20162 FvH4_2g24753 FvH4_3g12191 FvH4_3g12632 FvH4_3g16171 FvH4_4g05871 FvH4_4g05873 FvH4_4g10121 FvH4_4g15488 FvH4_4g23911 FvH4_4g27782 FvH4_5g08912 FvH4_5g23001 FvH4_5g24552 FvH4_5g32801 FvH4_5g32802 FvH4_6g05093 FvH4_6g19722 FvH4_6g20391 FvH4_6g33792 FvH4_7g01381 FvH4_7g16761 FvH4_7g16761 FvH4_7g16761
malus_domestica	MD01G1082500.v1.1 MD15G1436400.v1.1
prunus_persica	Prupe.2G021400_v2.0.a1 Prupe.2G052400_v2.0.a1 Prupe.2G065000_v2.0.a1 Prupe.2G187700_v2.0.a1 Prupe.2G187800_v2.0.a1 Prupe.2G189900_v2.0.a1 Prupe.2G191300_v2.0.a1 Prupe.2G191700_v2.0.a1 Prupe.4G265600_v2.0.a1 Prupe.7G014200_v2.0.a1 Prupe.7G039000_v2.0.a1
pyrus_communis	pycom01g05590 pycom01g05910 pycom02g12230 pycom02g25840 pycom03g15580 pycom04g04480 pycom05g09230 pycom05g23350 pycom05g23360 pycom07g08380 pycom09g01980 pycom09g01990 pycom11g18190 pycom11g18200 pycom11g21580 pycom13g04160 pycom15g25800 pycom16g16210 pycom16g17230 pycom16g24560 pycom16g25700 pycom17g11020
rosa_chinensis	RchiOBHm_Chr1g0359981 RchiOBHm_Chr2g0151961 RchiOBHm_Chr2g0171331 RchiOBHm_Chr5g0081471 RchiOBHm_Chr6g0283031 RchiOBHm_Chr7g0197111 RchiOBHm_Chr7g0222601
rosa_laevigata	RLG00000027843 RLG00000027845 RLG00000030065
rosa_multiflora	Rmu_sc0000381.1_g000031 Rmu_sc0001179.1_g000035 Rmu_sc0001616.1_g000046 Rmu_sc0001851.1_g000032 Rmu_sc0002152.1_g000013 Rmu_sc0004031.1_g000015 Rmu_sc0004645.1_g000003 Rmu_sc0007393.1_g000001 Rmu_sc0008949.1_g000003 Rmu_sc0009799.1_g000011 Rmu_sc0011614.1_g000001 Rmu_sc0011699.1_g000009 Rmu_sc0019280.1_g000001 Rmu_sc0023984.1_g000001 Rmu_ssc0000050.1_g000036
rosa_roxburghii	Rroxscaffold_1G00022650 Rroxscaffold_1G00033480 Rroxscaffold_3G00270250 Rroxscaffold_4G00296600 Rroxscaffold_4G00296760 Rroxscaffold_6G00409840
rosa_rugosa	Rorug01G0273800 Rorug01G0273900 Rorug01G0274000
rosa_samantha	Rh1AG287300 Rh1AG288100 Rh1BG253000 Rh1BG253500 Rh1BG399800 Rh1CG270400 Rh1CG271000 Rh1DG282000 Rh1DG282500 Rh4DG126500 Rh5DG194600 Rh5DG461100
rosa_wichuraiana	Rw0G009130 Rw1G002590 Rw1G008490 Rw1G012210 Rw1G014290 Rw1G014490 Rw1G025510 Rw2G025840 Rw2G026170 Rw2G036510 Rw3G003050 Rw4G009270 Rw5G002350 Rw5G013930 Rw5G019500 Rw5G025890 Rw5G029960 Rw5G032360 Rw6G009890 Rw6G015670 Rw6G015860 Rw7G010030 Rw7G032600 Rw7G032770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	515
AccII	CGCG	1 cut(s)	98
AciI	CCGC	1 cut(s)	96
AclI	AACGTT	1 cut(s)	497
AclWI	GGATC	2 cut(s)	231, 244
AfaI	GTAC	1 cut(s)	370
AfiI	CCNNNNNNNGG	1 cut(s)	246
AgsI	TTSAA	3 cut(s)	191, 301, 388
AjuI	GAANNNNNNNTTGG	4 cut(s)	15, 47, 320, 352
AloI	GAACNNNNNNTCC	2 cut(s)	374, 406
Alw26I	GTCTC	1 cut(s)	463
AlwI	GGATC	2 cut(s)	231, 244
AseI	ATTAAT	1 cut(s)	357
AspA2I	CCTAGG	1 cut(s)	47
AspLEI	GCGC	1 cut(s)	266
AsuHPI	GGTGA	1 cut(s)	353
AvrII	CCTAGG	1 cut(s)	47
BamHI	GGATCC	1 cut(s)	236
BbvCI	CCTCAGC	1 cut(s)	318
BccI	CCATC	1 cut(s)	227
BcoDI	GTCTC	1 cut(s)	463
BfaI	CTAG	2 cut(s)	48, 227
BfoI	RGCGCY	1 cut(s)	267
BisI	GCNGC	1 cut(s)	96
BlnI	CCTAGG	1 cut(s)	47
BlsI	GCNGC	1 cut(s)	97
BmiI	GGNNCC	1 cut(s)	238
BmsI	GCATC	1 cut(s)	417
BpmI	CTGGAG	1 cut(s)	420
Bpu10I	CCTNAGC	1 cut(s)	318
BsaAI	YACGTR	1 cut(s)	513
BsaI	GGTCTC	1 cut(s)	463
BsaJI	CCNNGG	2 cut(s)	47, 157
BsaXI	ACNNNNNCTCC	2 cut(s)	374, 404
Bsc4I	CCNNNNNNNGG	1 cut(s)	246
Bse1I	ACTGG	2 cut(s)	265, 376
BseDI	CCNNGG	2 cut(s)	47, 157
BseGI	GGATG	1 cut(s)	134
BseLI	CCNNNNNNNGG	1 cut(s)	246
BseMII	CTCAG	1 cut(s)	309
BseNI	ACTGG	2 cut(s)	265, 376
Bsh1236I	CGCG	1 cut(s)	98
BslI	CCNNNNNNNGG	1 cut(s)	246
BsmAI	GTCTC	1 cut(s)	463
Bso31I	GGTCTC	1 cut(s)	463
Bsp143I	GATC	2 cut(s)	236, 286
BspACI	CCGC	1 cut(s)	96
BspCNI	CTCAG	1 cut(s)	310
BspFNI	CGCG	1 cut(s)	98
BspLI	GGNNCC	1 cut(s)	238
BspPI	GGATC	2 cut(s)	231, 244
BspQI	GCTCTTC	1 cut(s)	186
BspTNI	GGTCTC	1 cut(s)	463
BsrI	ACTGG	2 cut(s)	265, 376
BssECI	CCNNGG	2 cut(s)	47, 157
BssMI	GATC	2 cut(s)	236, 286
BssNAI	GTATAC	1 cut(s)	516
BssT1I	CCWWGG	2 cut(s)	47, 157
Bst1107I	GTATAC	1 cut(s)	516
Bst6I	CTCTTC	1 cut(s)	186
BstBAI	YACGTR	1 cut(s)	513
BstC8I	GCNNGC	1 cut(s)	77
BstDEI	CTNAG	2 cut(s)	121, 318
BstF5I	GGATG	1 cut(s)	134
BstFNI	CGCG	1 cut(s)	98
BstH2I	RGCGCY	1 cut(s)	267
BstHHI	GCGC	1 cut(s)	266
BstKTI	GATC	2 cut(s)	239, 289
BstMAI	GTCTC	1 cut(s)	463
BstMBI	GATC	2 cut(s)	236, 286
BstMWI	GCNNNNNNNGC	2 cut(s)	270, 279
BstSNI	TACGTA	1 cut(s)	513
BstUI	CGCG	1 cut(s)	98
BstX2I	RGATCY	1 cut(s)	236
BstYI	RGATCY	1 cut(s)	236
BstZ17I	GTATAC	1 cut(s)	516
BtgZI	GCGATG	1 cut(s)	221
BtsCI	GGATG	1 cut(s)	134
BtsIMutI	CAGTG	1 cut(s)	258
Cac8I	GCNNGC	1 cut(s)	77
CfoI	GCGC	1 cut(s)	266
Csp6I	GTAC	1 cut(s)	369
CviAII	CATG	3 cut(s)	58, 275, 409
CviJI	RGCY	5 cut(s)	37, 95, 162, 317, 482
CviKI_1	RGCY	5 cut(s)	37, 95, 162, 317, 482
CviQI	GTAC	1 cut(s)	369
DdeI	CTNAG	2 cut(s)	121, 318
DpnI	GATC	2 cut(s)	238, 288
DpnII	GATC	2 cut(s)	236, 286
DraI	TTTAAA	1 cut(s)	573
Eam1104I	CTCTTC	1 cut(s)	186
EarI	CTCTTC	1 cut(s)	186
Eco105I	TACGTA	1 cut(s)	513
Eco130I	CCWWGG	2 cut(s)	47, 157
Eco31I	GGTCTC	1 cut(s)	463
Eco32I	GATATC	1 cut(s)	213
EcoRV	GATATC	1 cut(s)	213
EcoT14I	CCWWGG	2 cut(s)	47, 157
ErhI	CCWWGG	2 cut(s)	47, 157
FaeI	CATG	3 cut(s)	61, 278, 412
FaiI	YATR	8 cut(s)	59, 276, 285, 312, 410, 516, 555, 563
FatI	CATG	3 cut(s)	57, 274, 408
FblI	GTMKAC	1 cut(s)	515
Fnu4HI	GCNGC	1 cut(s)	96
FokI	GGATG	1 cut(s)	121
Fsp4HI	GCNGC	1 cut(s)	96
FspBI	CTAG	2 cut(s)	48, 227
GlaI	GCGC	1 cut(s)	265
GluI	GCNGC	1 cut(s)	96
GsuI	CTGGAG	1 cut(s)	420
HaeII	RGCGCY	1 cut(s)	267
HhaI	GCGC	1 cut(s)	266
Hin1II	CATG	3 cut(s)	61, 278, 412
Hin6I	GCGC	1 cut(s)	264
HinP1I	GCGC	1 cut(s)	264
HinfI	GANTC	5 cut(s)	131, 143, 344, 451, 486
HphI	GGTGA	1 cut(s)	353
Hpy166II	GTNNAC	4 cut(s)	127, 256, 393, 516
Hpy188I	TCNGA	4 cut(s)	22, 217, 241, 463
Hpy188III	TCNNGA	3 cut(s)	176, 301, 399
Hpy8I	GTNNAC	4 cut(s)	127, 256, 393, 516
HpyAV	CCTTC	4 cut(s)	20, 236, 318, 322
HpyCH4IV	ACGT	2 cut(s)	497, 512
HpyCH4V	TGCA	4 cut(s)	4, 68, 79, 430
HpyF10VI	GCNNNNNNNGC	2 cut(s)	270, 279
HpyF3I	CTNAG	2 cut(s)	121, 318
HpySE526I	ACGT	2 cut(s)	497, 512
Hsp92II	CATG	3 cut(s)	61, 278, 412
HspAI	GCGC	1 cut(s)	264
Kzo9I	GATC	2 cut(s)	236, 286
LguI	GCTCTTC	1 cut(s)	186
LpnPI	CCDG	7 cut(s)	246, 351, 357, 384, 440, 450, 468
LweI	GCATC	1 cut(s)	417
MaeI	CTAG	2 cut(s)	48, 227
MaeII	ACGT	2 cut(s)	497, 512
MalI	GATC	2 cut(s)	238, 288
MboI	GATC	2 cut(s)	236, 286
MboII	GAAGA	5 cut(s)	21, 35, 203, 460, 461
MfeI	CAATTG	1 cut(s)	197
MflI	RGATCY	1 cut(s)	236
MluCI	AATT	4 cut(s)	70, 197, 354, 574
MlyI	GAGTC	1 cut(s)	125
MnlI	CCTC	1 cut(s)	313
MseI	TTAA	3 cut(s)	108, 357, 572
MunI	CAATTG	1 cut(s)	197
MvnI	CGCG	1 cut(s)	98
MwoI	GCNNNNNNNGC	2 cut(s)	270, 279
NdeII	GATC	2 cut(s)	236, 286
NlaIII	CATG	3 cut(s)	61, 278, 412
NlaIV	GGNNCC	1 cut(s)	238
PciSI	GCTCTTC	1 cut(s)	186
PfeI	GAWTC	4 cut(s)	143, 344, 451, 486
PflFI	GACNNNGTC	1 cut(s)	122
PkrI	GCNGC	1 cut(s)	97
PleI	GAGTC	1 cut(s)	125
PpsI	GAGTC	1 cut(s)	125
Ppu21I	YACGTR	1 cut(s)	513
PshBI	ATTAAT	1 cut(s)	357
Psp1406I	AACGTT	1 cut(s)	497
PspN4I	GGNNCC	1 cut(s)	238
PsuI	RGATCY	1 cut(s)	236
PsyI	GACNNNGTC	1 cut(s)	122
RsaI	GTAC	1 cut(s)	370
RsaNI	GTAC	1 cut(s)	369
SapI	GCTCTTC	1 cut(s)	186
SaqAI	TTAA	3 cut(s)	108, 357, 572
SatI	GCNGC	1 cut(s)	96
Sau3AI	GATC	2 cut(s)	236, 286
SchI	GAGTC	1 cut(s)	125
SetI	ASST	7 cut(s)	31, 228, 308, 333, 381, 500, 515
SfaNI	GCATC	1 cut(s)	417
SnaBI	TACGTA	1 cut(s)	513
Sse9I	AATT	4 cut(s)	70, 197, 354, 574
SsiI	CCGC	1 cut(s)	96
SspMI	CTAG	2 cut(s)	48, 227
StyI	CCWWGG	2 cut(s)	47, 157
TaiI	ACGT	2 cut(s)	500, 515
TasI	AATT	4 cut(s)	70, 197, 354, 574
TauI	GCSGC	1 cut(s)	98
TfiI	GAWTC	4 cut(s)	143, 344, 451, 486
Tru1I	TTAA	3 cut(s)	108, 357, 572
Tru9I	TTAA	3 cut(s)	108, 357, 572
TscAI	CASTG	1 cut(s)	265
TspRI	CASTG	1 cut(s)	265
Tth111I	GACNNNGTC	1 cut(s)	122
VspI	ATTAAT	1 cut(s)	357
XmaJI	CCTAGG	1 cut(s)	47
XmiI	GTMKAC	1 cut(s)	515
XspI	CTAG	2 cut(s)	48, 227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.