Rroxscaffold_6G00409840
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000258
Physical Location & Seq
Reverse (-)
32357265 .. 32358145
881 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00409840.1

Sequence Viewer

Length: 783 bp
ATGTCTATGAGTATTATCAACCAAGATGTCTACAAATTAGATAAATTTCATGGAACAAATTTCACTCGATGGAAGGACAAGATGCGATTTGTGCCTACTGTTCTAAATGTCCTATATGTATTAGATCCAAAGTTGCCTCCCCTGCCTGAACCAAGTGATAAAGACACTGAACAAATAATTGTTGATCGAAAGAAACGCGAGGAAGATGAATTGGTTTGTAGAGGACACATCTTGGGTACCTTGACAGACCACTTGTATGATCTGTACACACACATCAAATCTCCAAGAGAAATATGGGAAGCTCTTGAGCACAACTACACCACAAAGAAGAAAGACCAAGTTCACGAGTTATTGGTATTGGTATCAAAGCTTCGTGAACTGAAAATAATTATTCCCGATACTATGATAGTTGGGGTTATTATGCATAAATTACCCCAAACATGGAATAATTATAGAAAGAAACTTCTGCACATGGTAAAAGATATGAGTTTGGAGAATCTGCAAAAGAGCATTCAAATTGAAGAAGAAACTAGAAATCGGGATAAGAGTTTTTCCTCTCAAGATTTCTCCAAAGTTCACAATGTGGAAGCAACAAAATATCAAAAGCACTTCAAAGTGAAAAATGACAAAGGAAGTCGAATGAAAACAAGGCTTGTTTCCATTGTGGAAAGAAAGGCCATTACATTCGTAACTGTAGACATAGAAAGTATAGCGAGCAATGTGCCAAAAAGACAAACGGTGCAAACATGGTGGAAGATACCGAAAGCGATATTGTGGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran

Protein Analysis

260

Amino Acids

30.8

Weight (kDa)

9.5

Isoelectric Point (pI)

41.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_2 PF14223 112 - 182 7.1e-12 gag-polypeptide of LTR copia-type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000258)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00980
fragaria_vesca FvH4_1g25682 FvH4_2g13961 FvH4_2g20162 FvH4_2g24753 FvH4_3g12191 FvH4_3g12632 FvH4_3g16171 FvH4_4g05871 FvH4_4g05873 FvH4_4g10121 FvH4_4g15488 FvH4_4g23911 FvH4_4g27782 FvH4_5g08912 FvH4_5g23001 FvH4_5g24552 FvH4_5g32801 FvH4_5g32802 FvH4_6g05093 FvH4_6g19722 FvH4_6g20391 FvH4_6g33792 FvH4_7g01381 FvH4_7g16761 FvH4_7g16761 FvH4_7g16761
malus_domestica MD01G1082500.v1.1 MD15G1436400.v1.1
prunus_persica Prupe.2G021400_v2.0.a1 Prupe.2G052400_v2.0.a1 Prupe.2G065000_v2.0.a1 Prupe.2G187700_v2.0.a1 Prupe.2G187800_v2.0.a1 Prupe.2G189900_v2.0.a1 Prupe.2G191300_v2.0.a1 Prupe.2G191700_v2.0.a1 Prupe.4G265600_v2.0.a1 Prupe.7G014200_v2.0.a1 Prupe.7G039000_v2.0.a1
pyrus_communis pycom01g05590 pycom01g05910 pycom02g12230 pycom02g25840 pycom03g15580 pycom04g04480 pycom05g09230 pycom05g23350 pycom05g23360 pycom07g08380 pycom09g01980 pycom09g01990 pycom11g18190 pycom11g18200 pycom11g21580 pycom13g04160 pycom15g25800 pycom16g16210 pycom16g17230 pycom16g24560 pycom16g25700 pycom17g11020
rosa_chinensis RchiOBHm_Chr1g0359981 RchiOBHm_Chr2g0151961 RchiOBHm_Chr2g0171331 RchiOBHm_Chr5g0081471 RchiOBHm_Chr6g0283031 RchiOBHm_Chr7g0197111 RchiOBHm_Chr7g0222601
rosa_laevigata RLG00000027843 RLG00000027845 RLG00000030065
rosa_multiflora Rmu_sc0000381.1_g000031 Rmu_sc0001179.1_g000035 Rmu_sc0001616.1_g000046 Rmu_sc0001851.1_g000032 Rmu_sc0002152.1_g000013 Rmu_sc0004031.1_g000015 Rmu_sc0004645.1_g000003 Rmu_sc0007393.1_g000001 Rmu_sc0008949.1_g000003 Rmu_sc0009799.1_g000011 Rmu_sc0011614.1_g000001 Rmu_sc0011699.1_g000009 Rmu_sc0019280.1_g000001 Rmu_sc0023984.1_g000001 Rmu_ssc0000050.1_g000036
rosa_roxburghii Rroxscaffold_1G00022650 Rroxscaffold_1G00033480 Rroxscaffold_3G00270250 Rroxscaffold_4G00296600 Rroxscaffold_4G00296760 Rroxscaffold_6G00409840
rosa_rugosa Rorug01G0273800 Rorug01G0273900 Rorug01G0274000
rosa_samantha Rh1AG287300 Rh1AG288100 Rh1BG253000 Rh1BG253500 Rh1BG399800 Rh1CG270400 Rh1CG271000 Rh1DG282000 Rh1DG282500 Rh4DG126500 Rh5DG194600 Rh5DG461100
rosa_wichuraiana Rw0G009130 Rw1G002590 Rw1G008490 Rw1G012210 Rw1G014290 Rw1G014490 Rw1G025510 Rw2G025840 Rw2G026170 Rw2G036510 Rw3G003050 Rw4G009270 Rw5G002350 Rw5G013930 Rw5G019500 Rw5G025890 Rw5G029960 Rw5G032360 Rw6G009890 Rw6G015670 Rw6G015860 Rw7G010030 Rw7G032600 Rw7G032770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 236
AccB1I GGYRCC 1 cut(s) 236
AccI GTMKAC 2 cut(s) 30, 696
AccII CGCG 1 cut(s) 198
AclWI GGATC 1 cut(s) 119
AcsI RAATTY 2 cut(s) 44, 58
AdeI CACNNNGTG 1 cut(s) 583
AfaI GTAC 2 cut(s) 238, 266
AfiI CCNNNNNNNGG 1 cut(s) 441
AgsI TTSAA 3 cut(s) 515, 521, 613
AluBI AGCT 2 cut(s) 302, 370
AluI AGCT 2 cut(s) 302, 370
Alw21I GWGCWC 1 cut(s) 312
AlwI GGATC 1 cut(s) 119
AoxI GGCC 1 cut(s) 675
ApoI RAATTY 2 cut(s) 44, 58
Asp718I GGTACC 1 cut(s) 236
BanI GGYRCC 1 cut(s) 236
BarI GAAGNNNNNNTAC 2 cut(s) 354, 386
BauI CACGAG 1 cut(s) 344
Bbv12I GWGCWC 1 cut(s) 312
BccI CCATC 1 cut(s) 63
BcgI CGANNNNNNTGC 2 cut(s) 703, 737
BfaI CTAG 1 cut(s) 531
BfmI CTRYAG 1 cut(s) 693
BmiI GGNNCC 1 cut(s) 238
BmsI GCATC 1 cut(s) 72
BpuEI CTTGAG 2 cut(s) 326, 543
Bsc4I CCNNNNNNNGG 1 cut(s) 441
Bse3DI GCAATG 1 cut(s) 724
BseLI CCNNNNNNNGG 1 cut(s) 441
BseMI GCAATG 1 cut(s) 724
BsgI GTGCAG 1 cut(s) 452
Bsh1236I CGCG 1 cut(s) 198
BshFI GGCC 1 cut(s) 677
BshNI GGYRCC 1 cut(s) 236
BsiHKAI GWGCWC 1 cut(s) 312
BslI CCNNNNNNNGG 1 cut(s) 441
BsmI GAATGC 1 cut(s) 510
BsnI GGCC 1 cut(s) 677
Bsp1286I GDGCHC 1 cut(s) 312
Bsp1407I TGTACA 1 cut(s) 264
Bsp143I GATC 3 cut(s) 124, 184, 259
BspANI GGCC 1 cut(s) 677
BspFNI CGCG 1 cut(s) 198
BspLI GGNNCC 1 cut(s) 238
BspPI GGATC 1 cut(s) 119
BspT107I GGYRCC 1 cut(s) 236
BsrDI GCAATG 1 cut(s) 724
BsrGI TGTACA 1 cut(s) 264
BssMI GATC 3 cut(s) 124, 184, 259
BssSI CACGAG 1 cut(s) 344
Bst2BI CACGAG 1 cut(s) 344
Bst4CI ACNGT 3 cut(s) 100, 694, 739
BstAUI TGTACA 1 cut(s) 264
BstC8I GCNNGC 1 cut(s) 715
BstFNI CGCG 1 cut(s) 198
BstKTI GATC 3 cut(s) 127, 187, 262
BstMBI GATC 3 cut(s) 124, 184, 259
BstMWI GCNNNNNNNGC 2 cut(s) 91, 142
BstSFI CTRYAG 1 cut(s) 693
BstUI CGCG 1 cut(s) 198
BstX2I RGATCY 1 cut(s) 124
BstYI RGATCY 1 cut(s) 124
BsuRI GGCC 1 cut(s) 677
BtsIMutI CAGTG 1 cut(s) 165
Cac8I GCNNGC 1 cut(s) 715
Csp6I GTAC 2 cut(s) 237, 265
CspCI CAANNNNNGTGG 2 cut(s) 731, 766
CviAII CATG 4 cut(s) 50, 441, 472, 747
CviJI RGCY 4 cut(s) 302, 370, 652, 677
CviKI_1 RGCY 4 cut(s) 302, 370, 652, 677
CviQI GTAC 2 cut(s) 237, 265
DpnI GATC 3 cut(s) 126, 186, 261
DpnII GATC 3 cut(s) 124, 184, 259
DraIII CACNNNGTG 1 cut(s) 583
EcoT22I ATGCAT 1 cut(s) 426
FaeI CATG 4 cut(s) 53, 444, 475, 750
FatI CATG 4 cut(s) 49, 440, 471, 746
FblI GTMKAC 2 cut(s) 30, 696
FspBI CTAG 1 cut(s) 531
HaeIII GGCC 1 cut(s) 677
Hin1II CATG 4 cut(s) 53, 444, 475, 750
HindIII AAGCTT 1 cut(s) 368
HinfI GANTC 1 cut(s) 496
Hpy166II GTNNAC 6 cut(s) 31, 267, 343, 377, 577, 697
Hpy188III TCNNGA 6 cut(s) 305, 344, 374, 395, 539, 560
Hpy8I GTNNAC 6 cut(s) 31, 267, 343, 377, 577, 697
HpyAV CCTTC 1 cut(s) 67
HpyCH4III ACNGT 3 cut(s) 100, 694, 739
HpyCH4V TGCA 4 cut(s) 424, 469, 502, 742
HpyF10VI GCNNNNNNNGC 2 cut(s) 91, 142
Hsp92II CATG 4 cut(s) 53, 444, 475, 750
KpnI GGTACC 1 cut(s) 240
Kzo9I GATC 3 cut(s) 124, 184, 259
LpnPI CCDG 2 cut(s) 155, 159
LweI GCATC 1 cut(s) 72
MaeI CTAG 1 cut(s) 531
MaeIII GTNAC 1 cut(s) 688
MalI GATC 3 cut(s) 126, 186, 261
MboI GATC 3 cut(s) 124, 184, 259
MboII GAAGA 5 cut(s) 215, 340, 533, 536, 766
MflI RGATCY 1 cut(s) 124
MhlI GDGCHC 1 cut(s) 312
MluCI AATT 9 cut(s) 35, 44, 58, 177, 209, 387, 428, 448, 516
MnlI CCTC 4 cut(s) 147, 193, 215, 565
Mph1103I ATGCAT 1 cut(s) 426
MslI CAYNNNNRTG 1 cut(s) 255
Mva1269I GAATGC 1 cut(s) 510
MvnI CGCG 1 cut(s) 198
MwoI GCNNNNNNNGC 2 cut(s) 91, 142
NdeII GATC 3 cut(s) 124, 184, 259
NlaIII CATG 4 cut(s) 53, 444, 475, 750
NlaIV GGNNCC 1 cut(s) 238
NsiI ATGCAT 1 cut(s) 426
PctI GAATGC 1 cut(s) 510
PfeI GAWTC 1 cut(s) 496
PspN4I GGNNCC 1 cut(s) 238
PsuI RGATCY 1 cut(s) 124
RsaI GTAC 2 cut(s) 238, 266
RsaNI GTAC 2 cut(s) 237, 265
RseI CAYNNNNRTG 1 cut(s) 255
Sau3AI GATC 3 cut(s) 124, 184, 259
SduI GDGCHC 1 cut(s) 312
SetI ASST 3 cut(s) 242, 304, 372
SfaNI GCATC 1 cut(s) 72
SfcI CTRYAG 1 cut(s) 693
SmiMI CAYNNNNRTG 1 cut(s) 255
SmlI CTYRAG 2 cut(s) 305, 558
SmoI CTYRAG 2 cut(s) 305, 558
Sse9I AATT 9 cut(s) 35, 44, 58, 177, 209, 387, 428, 448, 516
SspMI CTAG 1 cut(s) 531
TaaI ACNGT 3 cut(s) 100, 694, 739
TaqI TCGA 3 cut(s) 67, 187, 637
TasI AATT 9 cut(s) 35, 44, 58, 177, 209, 387, 428, 448, 516
TatI WGTACW 1 cut(s) 264
TfiI GAWTC 1 cut(s) 496
TscAI CASTG 1 cut(s) 172
TspDTI ATGAA 3 cut(s) 38, 222, 656
TspRI CASTG 1 cut(s) 172
XapI RAATTY 2 cut(s) 44, 58
XcmI CCANNNNNNNNNTGG 1 cut(s) 291
XmiI GTMKAC 2 cut(s) 30, 696
XspI CTAG 1 cut(s) 531
Zsp2I ATGCAT 1 cut(s) 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.