FvH4_5g32802

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000258
Physical Location & Seq
Reverse (-)
23692848 .. 23693705
858 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g32802.t1

Sequence Viewer

Length: 243 bp
ATGTCTAAAAGAGCTAAGCGAATTGGTGAAGCAGGAGTCCTGGTAGCGGAAGCTTATGCTCTCAGGGAAGACCCGCACAAAATTCATTTTCACCTCACAAAATGTTTCAATGCGTTGAGGGGCAGCGATATAAGGGTGTGCACGCGGGTTGGCGTCTTTGTGACTGAGTGGAAGTGGTGGATAGATCCGAACGGTTTTGTGCAAAGGGCGGCTCAGGTTTTAGGAGGCCAAACTGATGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

81

Amino Acids

9.01

Weight (kDa)

9.51

Isoelectric Point (pI)

35.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000258)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00980
fragaria_vesca FvH4_1g25682 FvH4_2g13961 FvH4_2g20162 FvH4_2g24753 FvH4_3g12191 FvH4_3g12632 FvH4_3g16171 FvH4_4g05871 FvH4_4g05873 FvH4_4g10121 FvH4_4g15488 FvH4_4g23911 FvH4_4g27782 FvH4_5g08912 FvH4_5g23001 FvH4_5g24552 FvH4_5g32801 FvH4_5g32802 FvH4_6g05093 FvH4_6g19722 FvH4_6g20391 FvH4_6g33792 FvH4_7g01381 FvH4_7g16761 FvH4_7g16761 FvH4_7g16761
malus_domestica MD01G1082500.v1.1 MD15G1436400.v1.1
prunus_persica Prupe.2G021400_v2.0.a1 Prupe.2G052400_v2.0.a1 Prupe.2G065000_v2.0.a1 Prupe.2G187700_v2.0.a1 Prupe.2G187800_v2.0.a1 Prupe.2G189900_v2.0.a1 Prupe.2G191300_v2.0.a1 Prupe.2G191700_v2.0.a1 Prupe.4G265600_v2.0.a1 Prupe.7G014200_v2.0.a1 Prupe.7G039000_v2.0.a1
pyrus_communis pycom01g05590 pycom01g05910 pycom02g12230 pycom02g25840 pycom03g15580 pycom04g04480 pycom05g09230 pycom05g23350 pycom05g23360 pycom07g08380 pycom09g01980 pycom09g01990 pycom11g18190 pycom11g18200 pycom11g21580 pycom13g04160 pycom15g25800 pycom16g16210 pycom16g17230 pycom16g24560 pycom16g25700 pycom17g11020
rosa_chinensis RchiOBHm_Chr1g0359981 RchiOBHm_Chr2g0151961 RchiOBHm_Chr2g0171331 RchiOBHm_Chr5g0081471 RchiOBHm_Chr6g0283031 RchiOBHm_Chr7g0197111 RchiOBHm_Chr7g0222601
rosa_laevigata RLG00000027843 RLG00000027845 RLG00000030065
rosa_multiflora Rmu_sc0000381.1_g000031 Rmu_sc0001179.1_g000035 Rmu_sc0001616.1_g000046 Rmu_sc0001851.1_g000032 Rmu_sc0002152.1_g000013 Rmu_sc0004031.1_g000015 Rmu_sc0004645.1_g000003 Rmu_sc0007393.1_g000001 Rmu_sc0008949.1_g000003 Rmu_sc0009799.1_g000011 Rmu_sc0011614.1_g000001 Rmu_sc0011699.1_g000009 Rmu_sc0019280.1_g000001 Rmu_sc0023984.1_g000001 Rmu_ssc0000050.1_g000036
rosa_roxburghii Rroxscaffold_1G00022650 Rroxscaffold_1G00033480 Rroxscaffold_3G00270250 Rroxscaffold_4G00296600 Rroxscaffold_4G00296760 Rroxscaffold_6G00409840
rosa_rugosa Rorug01G0273800 Rorug01G0273900 Rorug01G0274000
rosa_samantha Rh1AG287300 Rh1AG288100 Rh1BG253000 Rh1BG253500 Rh1BG399800 Rh1CG270400 Rh1CG271000 Rh1DG282000 Rh1DG282500 Rh4DG126500 Rh5DG194600 Rh5DG461100
rosa_wichuraiana Rw0G009130 Rw1G002590 Rw1G008490 Rw1G012210 Rw1G014290 Rw1G014490 Rw1G025510 Rw2G025840 Rw2G026170 Rw2G036510 Rw3G003050 Rw4G009270 Rw5G002350 Rw5G013930 Rw5G019500 Rw5G025890 Rw5G029960 Rw5G032360 Rw6G009890 Rw6G015670 Rw6G015860 Rw7G010030 Rw7G032600 Rw7G032770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 145
AciI CCGC 4 cut(s) 47, 74, 145, 209
AclWI GGATC 1 cut(s) 179
AcsI RAATTY 1 cut(s) 81
AcyI GRCGYC 1 cut(s) 153
AfiI CCNNNNNNNGG 1 cut(s) 46
AgsI TTSAA 1 cut(s) 109
AjnI CCWGG 1 cut(s) 39
AluBI AGCT 2 cut(s) 14, 53
AluI AGCT 2 cut(s) 14, 53
Alw21I GWGCWC 1 cut(s) 143
Alw44I GTGCAC 1 cut(s) 139
AlwI GGATC 1 cut(s) 179
AoxI GGCC 1 cut(s) 226
ApaLI GTGCAC 1 cut(s) 139
ApeKI GCWGC 1 cut(s) 123
ApoI RAATTY 1 cut(s) 81
AsuHPI GGTGA 2 cut(s) 38, 83
BaeGI GKGCMC 1 cut(s) 143
BbsI GAAGAC 1 cut(s) 75
Bbv12I GWGCWC 1 cut(s) 143
BbvI GCAGC 1 cut(s) 135
BccI CCATC 1 cut(s) 230
BciT130I CCWGG 1 cut(s) 41
BisI GCNGC 2 cut(s) 124, 210
BlpI GCTNAGC 1 cut(s) 15
BlsI GCNGC 2 cut(s) 125, 211
Bme1390I CCNGG 1 cut(s) 41
BmrFI CCNGG 1 cut(s) 41
BpiI GAAGAC 1 cut(s) 75
Bpu10I CCTNAGC 1 cut(s) 213
Bpu1102I GCTNAGC 1 cut(s) 15
BsaHI GRCGYC 1 cut(s) 153
BsaXI ACNNNNNCTCC 2 cut(s) 27, 57
Bsc4I CCNNNNNNNGG 1 cut(s) 46
BseBI CCWGG 1 cut(s) 41
BseLI CCNNNNNNNGG 1 cut(s) 46
BseMII CTCAG 3 cut(s) 76, 156, 227
BseSI GKGCMC 1 cut(s) 143
BseXI GCAGC 1 cut(s) 135
Bsh1236I CGCG 1 cut(s) 145
BshFI GGCC 1 cut(s) 228
BsiHKAI GWGCWC 1 cut(s) 143
BslI CCNNNNNNNGG 1 cut(s) 46
BsnI GGCC 1 cut(s) 228
Bsp1286I GDGCHC 1 cut(s) 143
Bsp143I GATC 1 cut(s) 184
Bsp1720I GCTNAGC 1 cut(s) 15
BspACI CCGC 4 cut(s) 47, 74, 145, 209
BspANI GGCC 1 cut(s) 228
BspCNI CTCAG 3 cut(s) 75, 157, 226
BspFNI CGCG 1 cut(s) 145
BspPI GGATC 1 cut(s) 179
BssMI GATC 1 cut(s) 184
BssNI GRCGYC 1 cut(s) 153
Bst2UI CCWGG 1 cut(s) 41
Bst4CI ACNGT 1 cut(s) 194
BstACI GRCGYC 1 cut(s) 153
BstC8I GCNNGC 1 cut(s) 143
BstDEI CTNAG 4 cut(s) 15, 62, 165, 213
BstFNI CGCG 1 cut(s) 145
BstKTI GATC 1 cut(s) 187
BstMBI GATC 1 cut(s) 184
BstNI CCWGG 1 cut(s) 41
BstSCI CCNGG 1 cut(s) 39
BstSLI GKGCMC 1 cut(s) 143
BstUI CGCG 1 cut(s) 145
BstV1I GCAGC 1 cut(s) 135
BstV2I GAAGAC 1 cut(s) 75
BstX2I RGATCY 1 cut(s) 184
BstXI CCANNNNNNTGG 1 cut(s) 236
BstYI RGATCY 1 cut(s) 184
BsuRI GGCC 1 cut(s) 228
Cac8I GCNNGC 1 cut(s) 143
CseI GACGC 1 cut(s) 142
CviJI RGCY 4 cut(s) 14, 53, 212, 228
CviKI_1 RGCY 4 cut(s) 14, 53, 212, 228
DdeI CTNAG 4 cut(s) 15, 62, 165, 213
DpnI GATC 1 cut(s) 186
DpnII GATC 1 cut(s) 184
EcoRII CCWGG 1 cut(s) 39
FaiI YATR 2 cut(s) 57, 131
FauI CCCGC 2 cut(s) 81, 138
Fnu4HI GCNGC 2 cut(s) 124, 210
Fsp4HI GCNGC 2 cut(s) 124, 210
GluI GCNGC 2 cut(s) 124, 210
HaeIII GGCC 1 cut(s) 228
HgaI GACGC 1 cut(s) 142
Hin1I GRCGYC 1 cut(s) 153
HindIII AAGCTT 1 cut(s) 51
HinfI GANTC 1 cut(s) 36
HphI GGTGA 2 cut(s) 38, 83
Hpy166II GTNNAC 1 cut(s) 141
Hpy188I TCNGA 1 cut(s) 189
Hpy8I GTNNAC 1 cut(s) 141
HpyCH4III ACNGT 1 cut(s) 194
HpyCH4V TGCA 2 cut(s) 141, 202
HpyF3I CTNAG 4 cut(s) 15, 62, 165, 213
Hsp92I GRCGYC 1 cut(s) 153
Kzo9I GATC 1 cut(s) 184
LpnPI CCDG 5 cut(s) 18, 26, 49, 53, 200
Lsp1109I GCAGC 1 cut(s) 135
MaeIII GTNAC 1 cut(s) 160
MalI GATC 1 cut(s) 186
MboI GATC 1 cut(s) 184
MboII GAAGA 1 cut(s) 80
MflI RGATCY 1 cut(s) 184
MhlI GDGCHC 1 cut(s) 143
MluCI AATT 2 cut(s) 21, 81
MlyI GAGTC 1 cut(s) 45
MnlI CCTC 3 cut(s) 104, 111, 218
MspR9I CCNGG 1 cut(s) 41
MvaI CCWGG 1 cut(s) 41
MvnI CGCG 1 cut(s) 145
NdeII GATC 1 cut(s) 184
NmuCI GTSAC 1 cut(s) 160
PkrI GCNGC 2 cut(s) 125, 211
PleI GAGTC 1 cut(s) 44
PpsI GAGTC 1 cut(s) 44
Psp6I CCWGG 1 cut(s) 39
PspGI CCWGG 1 cut(s) 39
PsuI RGATCY 1 cut(s) 184
SatI GCNGC 2 cut(s) 124, 210
Sau3AI GATC 1 cut(s) 184
SchI GAGTC 1 cut(s) 45
ScrFI CCNGG 1 cut(s) 41
SduI GDGCHC 1 cut(s) 143
SetI ASST 4 cut(s) 16, 55, 96, 219
SgeI CNNG 9 cut(s) 45, 52, 53, 76, 85, 154, 156, 158, 227
Sse9I AATT 2 cut(s) 21, 81
SsiI CCGC 4 cut(s) 47, 74, 145, 209
StyD4I CCNGG 1 cut(s) 39
TaaI ACNGT 1 cut(s) 194
TasI AATT 2 cut(s) 21, 81
TauI GCSGC 1 cut(s) 212
TseFI GTSAC 1 cut(s) 160
TseI GCWGC 1 cut(s) 123
Tsp45I GTSAC 1 cut(s) 160
TspDTI ATGAA 1 cut(s) 74
VneI GTGCAC 1 cut(s) 139
XapI RAATTY 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.