FvH4_2g24753

receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000258
Physical Location & Seq
Forward (+)
20146232 .. 20147359
1128 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g24753.t1

Sequence Viewer

Length: 645 bp
ATGGATCAATCTGCTGTTGTTGCTGGTGTGAAGAACCACATTGAGAAGCTCTTTGTGTTCAAAGGCCTGGACTTCAAAAGATGGCAGCAAAAGATGTTGTTTTATCTAGCAACATTGAACTTGGCACAATGTTTAACTTATGAAGGACCAAATTTACCTACTGAAGGTGATATTCCTGATGAAACTATAAAGGTTGTGGAGGCATGGACTCAAAACGAGTTTTTGTGCATGAATTATATTCTGAATGCCTTGGATGATTCTCTATACGATGTTTATCTATCATTCAAGACTCCTAAAGAGCTATGGGATTCTTTGGACAAGAAGTACAAGTCTAAAGTTGCAAGTGCCAAGAAGTTCATTGTTGGAAAATTCTTGAACTTCAAGATGAGTGACACCAATTCTGTGGTGAAACAAGTGGAGGAACTTCAAGTTACTGCTCATGAATTAAGAGATGAAGGTGCATCAAGGCATGTGTTTGTTGATATAAGTCTGTTTGCTACATATGAGCAAGGATCTGGTGGAGAAAATCTCTACATGGGCAATGCTAGCACTGCTGCAGTTGAAGGGAAAGGAAAAGTGATTCTGAAACTTACTTCTGGAAAGGAACTAGCACTCACCAACGTGCTTCATGTGCCTGAGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8

Protein Analysis

215

Amino Acids

24.06

Weight (kDa)

5.64

Isoelectric Point (pI)

31.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_2 PF14223 51 - 153 1.9e-15 gag-polypeptide of LTR copia-type
Pol_BBD PF22936 151 - 214 3e-14 Pol polyprotein, beta-barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000258)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00980
fragaria_vesca FvH4_1g25682 FvH4_2g13961 FvH4_2g20162 FvH4_2g24753 FvH4_3g12191 FvH4_3g12632 FvH4_3g16171 FvH4_4g05871 FvH4_4g05873 FvH4_4g10121 FvH4_4g15488 FvH4_4g23911 FvH4_4g27782 FvH4_5g08912 FvH4_5g23001 FvH4_5g24552 FvH4_5g32801 FvH4_5g32802 FvH4_6g05093 FvH4_6g19722 FvH4_6g20391 FvH4_6g33792 FvH4_7g01381 FvH4_7g16761 FvH4_7g16761 FvH4_7g16761
malus_domestica MD01G1082500.v1.1 MD15G1436400.v1.1
prunus_persica Prupe.2G021400_v2.0.a1 Prupe.2G052400_v2.0.a1 Prupe.2G065000_v2.0.a1 Prupe.2G187700_v2.0.a1 Prupe.2G187800_v2.0.a1 Prupe.2G189900_v2.0.a1 Prupe.2G191300_v2.0.a1 Prupe.2G191700_v2.0.a1 Prupe.4G265600_v2.0.a1 Prupe.7G014200_v2.0.a1 Prupe.7G039000_v2.0.a1
pyrus_communis pycom01g05590 pycom01g05910 pycom02g12230 pycom02g25840 pycom03g15580 pycom04g04480 pycom05g09230 pycom05g23350 pycom05g23360 pycom07g08380 pycom09g01980 pycom09g01990 pycom11g18190 pycom11g18200 pycom11g21580 pycom13g04160 pycom15g25800 pycom16g16210 pycom16g17230 pycom16g24560 pycom16g25700 pycom17g11020
rosa_chinensis RchiOBHm_Chr1g0359981 RchiOBHm_Chr2g0151961 RchiOBHm_Chr2g0171331 RchiOBHm_Chr5g0081471 RchiOBHm_Chr6g0283031 RchiOBHm_Chr7g0197111 RchiOBHm_Chr7g0222601
rosa_laevigata RLG00000027843 RLG00000027845 RLG00000030065
rosa_multiflora Rmu_sc0000381.1_g000031 Rmu_sc0001179.1_g000035 Rmu_sc0001616.1_g000046 Rmu_sc0001851.1_g000032 Rmu_sc0002152.1_g000013 Rmu_sc0004031.1_g000015 Rmu_sc0004645.1_g000003 Rmu_sc0007393.1_g000001 Rmu_sc0008949.1_g000003 Rmu_sc0009799.1_g000011 Rmu_sc0011614.1_g000001 Rmu_sc0011699.1_g000009 Rmu_sc0019280.1_g000001 Rmu_sc0023984.1_g000001 Rmu_ssc0000050.1_g000036
rosa_roxburghii Rroxscaffold_1G00022650 Rroxscaffold_1G00033480 Rroxscaffold_3G00270250 Rroxscaffold_4G00296600 Rroxscaffold_4G00296760 Rroxscaffold_6G00409840
rosa_rugosa Rorug01G0273800 Rorug01G0273900 Rorug01G0274000
rosa_samantha Rh1AG287300 Rh1AG288100 Rh1BG253000 Rh1BG253500 Rh1BG399800 Rh1CG270400 Rh1CG271000 Rh1DG282000 Rh1DG282500 Rh4DG126500 Rh5DG194600 Rh5DG461100
rosa_wichuraiana Rw0G009130 Rw1G002590 Rw1G008490 Rw1G012210 Rw1G014290 Rw1G014490 Rw1G025510 Rw2G025840 Rw2G026170 Rw2G036510 Rw3G003050 Rw4G009270 Rw5G002350 Rw5G013930 Rw5G019500 Rw5G025890 Rw5G029960 Rw5G032360 Rw6G009890 Rw6G015670 Rw6G015860 Rw7G010030 Rw7G032600 Rw7G032770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 12, 520
AcsI RAATTY 2 cut(s) 151, 368
AcuI CTGAAG 1 cut(s) 183
AfaI GTAC 1 cut(s) 326
AfiI CCNNNNNNNGG 1 cut(s) 164
AgsI TTSAA 8 cut(s) 61, 76, 118, 286, 376, 382, 428, 563
AjnI CCWGG 1 cut(s) 66
AleI CACNNNNGTG 1 cut(s) 620
AluBI AGCT 2 cut(s) 49, 301
AluI AGCT 2 cut(s) 49, 301
AlwI GGATC 2 cut(s) 12, 520
AoxI GGCC 1 cut(s) 64
ApeKI GCWGC 2 cut(s) 85, 554
ApoI RAATTY 2 cut(s) 151, 368
AspS9I GGNCC 1 cut(s) 146
AsuHPI GGTGA 3 cut(s) 179, 418, 607
AsuNHI GCTAGC 1 cut(s) 545
AvaII GGWCC 1 cut(s) 146
BbvI GCAGC 2 cut(s) 97, 541
BccI CCATC 1 cut(s) 75
BciT130I CCWGG 1 cut(s) 68
BfaI CTAG 3 cut(s) 107, 546, 608
BfmI CTRYAG 1 cut(s) 555
BisI GCNGC 2 cut(s) 86, 555
BlsI GCNGC 2 cut(s) 87, 556
Bme1390I CCNGG 1 cut(s) 68
Bme18I GGWCC 1 cut(s) 146
BmgT120I GGNCC 1 cut(s) 146
BmrFI CCNGG 1 cut(s) 68
BmsI GCATC 1 cut(s) 470
BmtI GCTAGC 1 cut(s) 549
BplI GAGNNNNNCTC 2 cut(s) 513, 545
BsaBI GATNNNNATC 1 cut(s) 273
BsaJI CCNNGG 1 cut(s) 249
Bsc4I CCNNNNNNNGG 1 cut(s) 164
Bse3DI GCAATG 1 cut(s) 547
Bse8I GATNNNNATC 1 cut(s) 273
BseBI CCWGG 1 cut(s) 68
BseDI CCNNGG 1 cut(s) 249
BseGI GGATG 1 cut(s) 259
BseJI GATNNNNATC 1 cut(s) 273
BseLI CCNNNNNNNGG 1 cut(s) 164
BseMI GCAATG 1 cut(s) 547
BseMII CTCAG 1 cut(s) 627
BseXI GCAGC 2 cut(s) 97, 541
BshFI GGCC 1 cut(s) 66
BslI CCNNNNNNNGG 1 cut(s) 164
BsmI GAATGC 1 cut(s) 250
BsnI GGCC 1 cut(s) 66
Bsp143I GATC 2 cut(s) 4, 512
BspANI GGCC 1 cut(s) 66
BspCNI CTCAG 1 cut(s) 628
BspHI TCATGA 1 cut(s) 439
BspMAI CTGCAG 1 cut(s) 559
BspOI GCTAGC 1 cut(s) 549
BspPI GGATC 2 cut(s) 12, 520
BsrDI GCAATG 1 cut(s) 547
BssECI CCNNGG 1 cut(s) 249
BssMI GATC 2 cut(s) 4, 512
BssT1I CCWWGG 1 cut(s) 249
Bst2UI CCWGG 1 cut(s) 68
BstC8I GCNNGC 1 cut(s) 547
BstDEI CTNAG 1 cut(s) 636
BstENI CCTNNNNNAGG 1 cut(s) 162
BstF5I GGATG 1 cut(s) 259
BstKTI GATC 2 cut(s) 7, 515
BstMBI GATC 2 cut(s) 4, 512
BstMWI GCNNNNNNNGC 4 cut(s) 20, 546, 551, 631
BstNI CCWGG 1 cut(s) 68
BstNSI RCATGY 1 cut(s) 473
BstSCI CCNGG 1 cut(s) 66
BstSFI CTRYAG 1 cut(s) 555
BstV1I GCAGC 2 cut(s) 97, 541
BstX2I RGATCY 1 cut(s) 512
BstXI CCANNNNNNTGG 1 cut(s) 403
BstYI RGATCY 1 cut(s) 512
BsuRI GGCC 1 cut(s) 66
BtsCI GGATG 1 cut(s) 259
BtsI GCAGTG 1 cut(s) 549
BtsIMutI CAGTG 1 cut(s) 549
Cac8I GCNNGC 1 cut(s) 547
CciI TCATGA 1 cut(s) 439
Cfr13I GGNCC 1 cut(s) 146
Csp6I GTAC 1 cut(s) 325
CviAII CATG 6 cut(s) 204, 229, 440, 470, 535, 629
CviJI RGCY 3 cut(s) 49, 66, 301
CviKI_1 RGCY 3 cut(s) 49, 66, 301
CviQI GTAC 1 cut(s) 325
DdeI CTNAG 1 cut(s) 636
DpnI GATC 2 cut(s) 6, 514
DpnII GATC 2 cut(s) 4, 512
Eco130I CCWWGG 1 cut(s) 249
Eco147I AGGCCT 1 cut(s) 66
Eco47I GGWCC 1 cut(s) 146
Eco57I CTGAAG 1 cut(s) 183
EcoNI CCTNNNNNAGG 1 cut(s) 162
EcoRII CCWGG 1 cut(s) 66
EcoT14I CCWWGG 1 cut(s) 249
ErhI CCWWGG 1 cut(s) 249
FaeI CATG 6 cut(s) 207, 232, 443, 473, 538, 632
FatI CATG 6 cut(s) 203, 228, 439, 469, 534, 628
FauNDI CATATG 1 cut(s) 502
Fnu4HI GCNGC 2 cut(s) 86, 555
FokI GGATG 1 cut(s) 266
Fsp4HI GCNGC 2 cut(s) 86, 555
FspBI CTAG 3 cut(s) 107, 546, 608
GluI GCNGC 2 cut(s) 86, 555
HaeIII GGCC 1 cut(s) 66
Hin1II CATG 6 cut(s) 207, 232, 443, 473, 538, 632
HinfI GANTC 5 cut(s) 208, 257, 289, 308, 580
HphI GGTGA 3 cut(s) 179, 418, 607
Hpy188I TCNGA 2 cut(s) 243, 585
Hpy188III TCNNGA 6 cut(s) 176, 286, 373, 382, 440, 597
HpyAV CCTTC 4 cut(s) 137, 158, 449, 557
HpyCH4IV ACGT 1 cut(s) 621
HpyCH4V TGCA 4 cut(s) 228, 341, 461, 557
HpyF10VI GCNNNNNNNGC 4 cut(s) 20, 546, 551, 631
HpyF3I CTNAG 1 cut(s) 636
HpySE526I ACGT 1 cut(s) 621
Hsp92II CATG 6 cut(s) 207, 232, 443, 473, 538, 632
Kzo9I GATC 2 cut(s) 4, 512
LpnPI CCDG 6 cut(s) 9, 53, 80, 189, 501, 582
Lsp1109I GCAGC 2 cut(s) 97, 541
LweI GCATC 1 cut(s) 470
MaeI CTAG 3 cut(s) 107, 546, 608
MaeII ACGT 1 cut(s) 621
MaeIII GTNAC 2 cut(s) 389, 430
MalI GATC 2 cut(s) 6, 514
MboI GATC 2 cut(s) 4, 512
MboII GAAGA 1 cut(s) 43
MflI RGATCY 1 cut(s) 512
MluCI AATT 5 cut(s) 151, 232, 368, 397, 443
MlyI GAGTC 2 cut(s) 202, 283
MmeI TCCRAC 1 cut(s) 343
MnlI CCTC 2 cut(s) 193, 412
MseI TTAA 2 cut(s) 134, 446
MslI CAYNNNNRTG 1 cut(s) 620
MspR9I CCNGG 1 cut(s) 68
Mva1269I GAATGC 1 cut(s) 250
MvaI CCWGG 1 cut(s) 68
MwoI GCNNNNNNNGC 4 cut(s) 20, 546, 551, 631
NdeI CATATG 1 cut(s) 502
NdeII GATC 2 cut(s) 4, 512
NheI GCTAGC 1 cut(s) 545
NlaIII CATG 6 cut(s) 207, 232, 443, 473, 538, 632
NmuCI GTSAC 1 cut(s) 389
NspI RCATGY 1 cut(s) 473
OliI CACNNNNGTG 1 cut(s) 620
PagI TCATGA 1 cut(s) 439
PceI AGGCCT 1 cut(s) 66
PctI GAATGC 1 cut(s) 250
PfeI GAWTC 3 cut(s) 257, 308, 580
PkrI GCNGC 2 cut(s) 87, 556
PleI GAGTC 2 cut(s) 202, 283
PpsI GAGTC 2 cut(s) 202, 283
Psp6I CCWGG 1 cut(s) 66
PspGI CCWGG 1 cut(s) 66
PspPI GGNCC 1 cut(s) 146
PstI CTGCAG 1 cut(s) 559
PsuI RGATCY 1 cut(s) 512
RsaI GTAC 1 cut(s) 326
RsaNI GTAC 1 cut(s) 325
RseI CAYNNNNRTG 1 cut(s) 620
SaqAI TTAA 2 cut(s) 134, 446
SatI GCNGC 2 cut(s) 86, 555
Sau3AI GATC 2 cut(s) 4, 512
Sau96I GGNCC 1 cut(s) 146
SchI GAGTC 2 cut(s) 202, 283
ScrFI CCNGG 1 cut(s) 68
SetI ASST 7 cut(s) 51, 160, 169, 195, 303, 460, 624
SfaNI GCATC 1 cut(s) 470
SfcI CTRYAG 1 cut(s) 555
SinI GGWCC 1 cut(s) 146
SmiMI CAYNNNNRTG 1 cut(s) 620
Sse9I AATT 5 cut(s) 151, 232, 368, 397, 443
SseBI AGGCCT 1 cut(s) 66
SspMI CTAG 3 cut(s) 107, 546, 608
StuI AGGCCT 1 cut(s) 66
StyD4I CCNGG 1 cut(s) 66
StyI CCWWGG 1 cut(s) 249
TaiI ACGT 1 cut(s) 624
TasI AATT 5 cut(s) 151, 232, 368, 397, 443
TatI WGTACW 1 cut(s) 324
TfiI GAWTC 3 cut(s) 257, 308, 580
Tru1I TTAA 2 cut(s) 134, 446
Tru9I TTAA 2 cut(s) 134, 446
TscAI CASTG 1 cut(s) 556
TseFI GTSAC 1 cut(s) 389
TseI GCWGC 2 cut(s) 85, 554
Tsp45I GTSAC 1 cut(s) 389
TspDTI ATGAA 7 cut(s) 156, 195, 245, 346, 456, 468, 617
TspRI CASTG 1 cut(s) 556
VpaK11BI GGWCC 1 cut(s) 146
XagI CCTNNNNNAGG 1 cut(s) 162
XapI RAATTY 2 cut(s) 151, 368
XceI RCATGY 1 cut(s) 473
XspI CTAG 3 cut(s) 107, 546, 608
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.