Prupe.2G187800_v2.0.a1

gag-polypeptide of LTR copia-type

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000258
Physical Location & Seq
Forward (+)
22826147 .. 22827592
1446 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G187800.1

Sequence Viewer

Length: 879 bp
ATGGACACAGAGCGACTTGGAATCGATCCGTCTGGCAAGGGCCGGAACGGTGGAGAAGAGCTCACGGACACGAAGCTACCAAAACCAACGCCATGGAAGATTGGGGGATTTTATGGAGTTTTTGAAGGAAGAGATGGAATGCCGGTTTCTGGCTGGGTCATCTGGAAAGACTTGAATAAGAGGACCCGAGACATGCATGCGGTCGCCAAGATTGAGTCAAAGTTGAGATCTGAACGTGATAATGAGCAAAGGGAATATGGTATGTCTGGTCTTGCTCGTCCAGAACTTGTTCCCATTGACCCTGTTCGTCTTGATGGGAAGAACTACCCCATCTGGGCGCCGCGAATGGAGTTTTTCCTCAAGGAATTAAAAGTTGAATATGTACTCTATGAGCCATGCCCTAGCATTATTGTAGGATCTGTAGCATTTTCTGGAGGACTTACTGAATTGAAGGATGCTAAAGAGAAATGGATCAAGGATGACTTTCTGGGTCTTCGCACGATCTTGAACTATCTATGCGATGATCTCCTCCATCGTTACGGAAAGAGAAAGAAAACTCCAACTGCTAAACAACTGTGGGACGATCTAAAATTAATGTTTGGAACAAAGAAATATCTGGTTAGAAAGTACATGGATTTTCAGATGGTCGATGAAAAGCCACTTGTGGAGCAAATTCAAGAATTCAATCGCATTTTCGATGAAGTTGTGGCTTCTGGAATGACGTTGAGTGAGAAATTTCATGTATCTGCTATCTTATCCAAGCTCCCTGCCTCTTGGAAGCATGTGAACATCAAGTTGAAGCGCAATATTAATGAGCCTTTGACTTTAGAAGTGTTGATGGATCATTTGAGGATTGAAGAAGATTACGTTTGCGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DEK_C PC4 Retrotran_gag_2

Protein Analysis

293

Amino Acids

33.81

Weight (kDa)

8.23

Isoelectric Point (pI)

42.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000258)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00980
fragaria_vesca FvH4_1g25682 FvH4_2g13961 FvH4_2g20162 FvH4_2g24753 FvH4_3g12191 FvH4_3g12632 FvH4_3g16171 FvH4_4g05871 FvH4_4g05873 FvH4_4g10121 FvH4_4g15488 FvH4_4g23911 FvH4_4g27782 FvH4_5g08912 FvH4_5g23001 FvH4_5g24552 FvH4_5g32801 FvH4_5g32802 FvH4_6g05093 FvH4_6g19722 FvH4_6g20391 FvH4_6g33792 FvH4_7g01381 FvH4_7g16761 FvH4_7g16761 FvH4_7g16761
malus_domestica MD01G1082500.v1.1 MD15G1436400.v1.1
prunus_persica Prupe.2G021400_v2.0.a1 Prupe.2G052400_v2.0.a1 Prupe.2G065000_v2.0.a1 Prupe.2G187700_v2.0.a1 Prupe.2G187800_v2.0.a1 Prupe.2G189900_v2.0.a1 Prupe.2G191300_v2.0.a1 Prupe.2G191700_v2.0.a1 Prupe.4G265600_v2.0.a1 Prupe.7G014200_v2.0.a1 Prupe.7G039000_v2.0.a1
pyrus_communis pycom01g05590 pycom01g05910 pycom02g12230 pycom02g25840 pycom03g15580 pycom04g04480 pycom05g09230 pycom05g23350 pycom05g23360 pycom07g08380 pycom09g01980 pycom09g01990 pycom11g18190 pycom11g18200 pycom11g21580 pycom13g04160 pycom15g25800 pycom16g16210 pycom16g17230 pycom16g24560 pycom16g25700 pycom17g11020
rosa_chinensis RchiOBHm_Chr1g0359981 RchiOBHm_Chr2g0151961 RchiOBHm_Chr2g0171331 RchiOBHm_Chr5g0081471 RchiOBHm_Chr6g0283031 RchiOBHm_Chr7g0197111 RchiOBHm_Chr7g0222601
rosa_laevigata RLG00000027843 RLG00000027845 RLG00000030065
rosa_multiflora Rmu_sc0000381.1_g000031 Rmu_sc0001179.1_g000035 Rmu_sc0001616.1_g000046 Rmu_sc0001851.1_g000032 Rmu_sc0002152.1_g000013 Rmu_sc0004031.1_g000015 Rmu_sc0004645.1_g000003 Rmu_sc0007393.1_g000001 Rmu_sc0008949.1_g000003 Rmu_sc0009799.1_g000011 Rmu_sc0011614.1_g000001 Rmu_sc0011699.1_g000009 Rmu_sc0019280.1_g000001 Rmu_sc0023984.1_g000001 Rmu_ssc0000050.1_g000036
rosa_roxburghii Rroxscaffold_1G00022650 Rroxscaffold_1G00033480 Rroxscaffold_3G00270250 Rroxscaffold_4G00296600 Rroxscaffold_4G00296760 Rroxscaffold_6G00409840
rosa_rugosa Rorug01G0273800 Rorug01G0273900 Rorug01G0274000
rosa_samantha Rh1AG287300 Rh1AG288100 Rh1BG253000 Rh1BG253500 Rh1BG399800 Rh1CG270400 Rh1CG271000 Rh1DG282000 Rh1DG282500 Rh4DG126500 Rh5DG194600 Rh5DG461100
rosa_wichuraiana Rw0G009130 Rw1G002590 Rw1G008490 Rw1G012210 Rw1G014290 Rw1G014490 Rw1G025510 Rw2G025840 Rw2G026170 Rw2G036510 Rw3G003050 Rw4G009270 Rw5G002350 Rw5G013930 Rw5G019500 Rw5G025890 Rw5G029960 Rw5G032360 Rw6G009890 Rw6G015670 Rw6G015860 Rw7G010030 Rw7G032600 Rw7G032770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 337
AccII CGCG 1 cut(s) 343
AciI CCGC 2 cut(s) 200, 341
AclWI GGATC 4 cut(s) 20, 424, 479, 849
AcsI RAATTY 3 cut(s) 672, 680, 734
AcyI GRCGYC 1 cut(s) 338
AfaI GTAC 2 cut(s) 384, 629
AfiI CCNNNNNNNGG 2 cut(s) 149, 334
AgsI TTSAA 9 cut(s) 125, 175, 377, 451, 508, 677, 685, 799, 857
AluBI AGCT 3 cut(s) 61, 76, 763
AluI AGCT 3 cut(s) 61, 76, 763
Alw21I GWGCWC 1 cut(s) 63
Alw26I GTCTC 1 cut(s) 183
AlwI GGATC 4 cut(s) 20, 424, 479, 849
Ama87I CYCGRG 1 cut(s) 186
AoxI GGCC 1 cut(s) 40
ApoI RAATTY 3 cut(s) 672, 680, 734
AseI ATTAAT 2 cut(s) 593, 810
Asp700I GAANNNNTTC 1 cut(s) 288
AspLEI GCGC 2 cut(s) 340, 804
AspS9I GGNCC 2 cut(s) 40, 183
AvaI CYCGRG 1 cut(s) 186
AvaII GGWCC 1 cut(s) 183
BanI GGYRCC 1 cut(s) 337
BanII GRGCYC 1 cut(s) 63
BbsI GAAGAC 1 cut(s) 485
Bbv12I GWGCWC 1 cut(s) 63
BccI CCATC 6 cut(s) 128, 308, 338, 540, 637, 832
BcoDI GTCTC 1 cut(s) 183
BfaI CTAG 1 cut(s) 402
BfmI CTRYAG 1 cut(s) 420
BfoI RGCGCY 1 cut(s) 341
BglII AGATCT 1 cut(s) 227
BisI GCNGC 1 cut(s) 341
BlsI GCNGC 1 cut(s) 342
Bme18I GGWCC 1 cut(s) 183
BmeT110I CYCGRG 1 cut(s) 186
BmgT120I GGNCC 2 cut(s) 40, 183
BmiI GGNNCC 2 cut(s) 185, 339
BmsI GCATC 1 cut(s) 445
BpiI GAAGAC 1 cut(s) 485
BplI GAGNNNNNCTC 2 cut(s) 45, 77
BpmI CTGGAG 1 cut(s) 453
BpuEI CTTGAG 1 cut(s) 344
Bsa29I ATCGAT 1 cut(s) 24
BsaHI GRCGYC 1 cut(s) 338
BsaJI CCNNGG 1 cut(s) 92
Bsc4I CCNNNNNNNGG 2 cut(s) 149, 334
Bse118I RCCGGY 1 cut(s) 142
BseCI ATCGAT 1 cut(s) 24
BseDI CCNNGG 1 cut(s) 92
BseGI GGATG 2 cut(s) 460, 484
BseLI CCNNNNNNNGG 2 cut(s) 149, 334
BseRI GAGGAG 1 cut(s) 518
BseYI CCCAGC 1 cut(s) 153
Bsh1236I CGCG 1 cut(s) 343
Bsh1285I CGRYCG 1 cut(s) 204
BshFI GGCC 1 cut(s) 42
BshNI GGYRCC 1 cut(s) 337
BshVI ATCGAT 1 cut(s) 24
BsiEI CGRYCG 1 cut(s) 204
BsiHKAI GWGCWC 1 cut(s) 63
BsiHKCI CYCGRG 1 cut(s) 186
BsiSI CCGG 2 cut(s) 43, 143
BslFI GGGAC 1 cut(s) 593
BslI CCNNNNNNNGG 2 cut(s) 149, 334
BsmAI GTCTC 1 cut(s) 183
BsmFI GGGAC 1 cut(s) 593
BsmI GAATGC 1 cut(s) 144
BsnI GGCC 1 cut(s) 42
BsoBI CYCGRG 1 cut(s) 186
Bsp1286I GDGCHC 1 cut(s) 63
Bsp143I GATC 8 cut(s) 25, 227, 416, 471, 501, 523, 583, 841
Bsp19I CCATGG 1 cut(s) 92
BspACI CCGC 2 cut(s) 200, 341
BspANI GGCC 1 cut(s) 42
BspDI ATCGAT 1 cut(s) 24
BspFNI CGCG 1 cut(s) 343
BspLI GGNNCC 2 cut(s) 185, 339
BspPI GGATC 4 cut(s) 20, 424, 479, 849
BspQI GCTCTTC 1 cut(s) 51
BspT107I GGYRCC 1 cut(s) 337
BsrFI RCCGGY 1 cut(s) 142
BssAI RCCGGY 1 cut(s) 142
BssECI CCNNGG 1 cut(s) 92
BssMI GATC 8 cut(s) 25, 227, 416, 471, 501, 523, 583, 841
BssNI GRCGYC 1 cut(s) 338
BssT1I CCWWGG 1 cut(s) 92
Bst4CI ACNGT 2 cut(s) 50, 576
Bst6I CTCTTC 2 cut(s) 51, 124
BstACI GRCGYC 1 cut(s) 338
BstC8I GCNNGC 1 cut(s) 198
BstDSI CCRYGG 1 cut(s) 92
BstF5I GGATG 2 cut(s) 460, 484
BstFNI CGCG 1 cut(s) 343
BstH2I RGCGCY 1 cut(s) 341
BstHHI GCGC 2 cut(s) 340, 804
BstKTI GATC 8 cut(s) 28, 230, 419, 474, 504, 526, 586, 844
BstMAI GTCTC 1 cut(s) 183
BstMBI GATC 8 cut(s) 25, 227, 416, 471, 501, 523, 583, 841
BstMCI CGRYCG 1 cut(s) 204
BstNSI RCATGY 3 cut(s) 196, 200, 785
BstSFI CTRYAG 1 cut(s) 420
BstUI CGCG 1 cut(s) 343
BstV2I GAAGAC 1 cut(s) 485
BstX2I RGATCY 2 cut(s) 227, 416
BstXI CCANNNNNNTGG 1 cut(s) 93
BstYI RGATCY 2 cut(s) 227, 416
Bsu15I ATCGAT 1 cut(s) 24
BsuRI GGCC 1 cut(s) 42
BsuTUI ATCGAT 1 cut(s) 24
BtgI CCRYGG 1 cut(s) 92
BtgZI GCGATG 1 cut(s) 534
BtsCI GGATG 2 cut(s) 460, 484
Cac8I GCNNGC 1 cut(s) 198
CfoI GCGC 2 cut(s) 340, 804
Cfr10I RCCGGY 1 cut(s) 142
Cfr13I GGNCC 2 cut(s) 40, 183
ClaI ATCGAT 1 cut(s) 24
Csp6I GTAC 2 cut(s) 383, 628
CviAII CATG 7 cut(s) 93, 193, 197, 396, 631, 740, 782
CviJI RGCY 9 cut(s) 42, 61, 76, 153, 394, 658, 710, 763, 817
CviKI_1 RGCY 9 cut(s) 42, 61, 76, 153, 394, 658, 710, 763, 817
CviQI GTAC 2 cut(s) 383, 628
DinI GGCGCC 1 cut(s) 339
DpnI GATC 8 cut(s) 27, 229, 418, 473, 503, 525, 585, 843
DpnII GATC 8 cut(s) 25, 227, 416, 471, 501, 523, 583, 841
Eam1104I CTCTTC 2 cut(s) 51, 124
EarI CTCTTC 2 cut(s) 51, 124
Ecl136II GAGCTC 1 cut(s) 61
Eco130I CCWWGG 1 cut(s) 92
Eco24I GRGCYC 1 cut(s) 63
Eco47I GGWCC 1 cut(s) 183
Eco53kI GAGCTC 1 cut(s) 61
Eco88I CYCGRG 1 cut(s) 186
EcoICRI GAGCTC 1 cut(s) 61
EcoO109I RGGNCCY 1 cut(s) 183
EcoRI GAATTC 1 cut(s) 680
EcoT14I CCWWGG 1 cut(s) 92
EcoT22I ATGCAT 1 cut(s) 198
EcoT38I GRGCYC 1 cut(s) 63
EgeI GGCGCC 1 cut(s) 339
EheI GGCGCC 1 cut(s) 339
ErhI CCWWGG 1 cut(s) 92
FaeI CATG 7 cut(s) 96, 196, 200, 399, 634, 743, 785
FalI AAGNNNNNCTT 2 cut(s) 467, 499
FaqI GGGAC 1 cut(s) 593
FatI CATG 7 cut(s) 92, 192, 196, 395, 630, 739, 781
Fnu4HI GCNGC 1 cut(s) 341
FokI GGATG 2 cut(s) 467, 491
FriOI GRGCYC 1 cut(s) 63
Fsp4HI GCNGC 1 cut(s) 341
FspBI CTAG 1 cut(s) 402
GlaI GCGC 2 cut(s) 339, 803
GluI GCNGC 1 cut(s) 341
GsaI CCCAGC 1 cut(s) 157
GsuI CTGGAG 1 cut(s) 453
HaeII RGCGCY 1 cut(s) 341
HaeIII GGCC 1 cut(s) 42
HapII CCGG 2 cut(s) 43, 143
HhaI GCGC 2 cut(s) 340, 804
Hin1I GRCGYC 1 cut(s) 338
Hin1II CATG 7 cut(s) 96, 196, 200, 399, 634, 743, 785
Hin6I GCGC 2 cut(s) 338, 802
HinP1I GCGC 2 cut(s) 338, 802
HinfI GANTC 2 cut(s) 21, 215
HpaII CCGG 2 cut(s) 43, 143
Hpy166II GTNNAC 1 cut(s) 787
Hpy188I TCNGA 2 cut(s) 232, 642
Hpy188III TCNNGA 7 cut(s) 163, 281, 311, 432, 505, 677, 714
Hpy8I GTNNAC 1 cut(s) 787
HpyAV CCTTC 2 cut(s) 119, 445
HpyCH4III ACNGT 2 cut(s) 50, 576
HpyCH4IV ACGT 3 cut(s) 235, 722, 867
HpyCH4V TGCA 1 cut(s) 196
HpySE526I ACGT 3 cut(s) 235, 722, 867
Hsp92I GRCGYC 1 cut(s) 338
Hsp92II CATG 7 cut(s) 96, 196, 200, 399, 634, 743, 785
HspAI GCGC 2 cut(s) 338, 802
KasI GGCGCC 1 cut(s) 337
Kzo9I GATC 8 cut(s) 25, 227, 416, 471, 501, 523, 583, 841
LguI GCTCTTC 1 cut(s) 51
LmnI GCTCC 2 cut(s) 667, 768
LweI GCATC 1 cut(s) 445
MaeI CTAG 1 cut(s) 402
MaeII ACGT 3 cut(s) 235, 722, 867
MaeIII GTNAC 1 cut(s) 536
MalI GATC 8 cut(s) 27, 229, 418, 473, 503, 525, 585, 843
MboI GATC 8 cut(s) 25, 227, 416, 471, 501, 523, 583, 841
MboII GAAGA 7 cut(s) 68, 109, 141, 331, 485, 869, 872
MflI RGATCY 2 cut(s) 227, 416
MhlI GDGCHC 1 cut(s) 63
MluCI AATT 6 cut(s) 365, 446, 590, 672, 680, 734
Mly113I GGCGCC 1 cut(s) 338
MlyI GAGTC 1 cut(s) 224
MmeI TCCRAC 1 cut(s) 584
MnlI CCTC 6 cut(s) 174, 368, 428, 539, 781, 843
Mph1103I ATGCAT 1 cut(s) 198
MroXI GAANNNNTTC 1 cut(s) 288
MseI TTAA 3 cut(s) 368, 593, 810
MspI CCGG 2 cut(s) 43, 143
Mva1269I GAATGC 1 cut(s) 144
MvnI CGCG 1 cut(s) 343
NarI GGCGCC 1 cut(s) 338
NcoI CCATGG 1 cut(s) 92
NdeII GATC 8 cut(s) 25, 227, 416, 471, 501, 523, 583, 841
NlaIII CATG 7 cut(s) 96, 196, 200, 399, 634, 743, 785
NlaIV GGNNCC 2 cut(s) 185, 339
NsiI ATGCAT 1 cut(s) 198
NspI RCATGY 3 cut(s) 196, 200, 785
PaeI GCATGC 1 cut(s) 200
PciSI GCTCTTC 1 cut(s) 51
PctI GAATGC 1 cut(s) 144
PdmI GAANNNNTTC 1 cut(s) 288
PfeI GAWTC 1 cut(s) 21
PkrI GCNGC 1 cut(s) 342
PleI GAGTC 1 cut(s) 223
PluTI GGCGCC 1 cut(s) 341
PpsI GAGTC 1 cut(s) 223
PpuMI RGGWCCY 1 cut(s) 183
PshBI ATTAAT 2 cut(s) 593, 810
Psp124BI GAGCTC 1 cut(s) 63
Psp5II RGGWCCY 1 cut(s) 183
PspFI CCCAGC 1 cut(s) 153
PspN4I GGNNCC 2 cut(s) 185, 339
PspPI GGNCC 2 cut(s) 40, 183
PspPPI RGGWCCY 1 cut(s) 183
PsuI RGATCY 2 cut(s) 227, 416
RsaI GTAC 2 cut(s) 384, 629
RsaNI GTAC 2 cut(s) 383, 628
SacI GAGCTC 1 cut(s) 63
SapI GCTCTTC 1 cut(s) 51
SaqAI TTAA 3 cut(s) 368, 593, 810
SatI GCNGC 1 cut(s) 341
Sau3AI GATC 8 cut(s) 25, 227, 416, 471, 501, 523, 583, 841
Sau96I GGNCC 2 cut(s) 40, 183
SchI GAGTC 1 cut(s) 224
SduI GDGCHC 1 cut(s) 63
SetI ASST 6 cut(s) 63, 78, 238, 725, 765, 870
SfaNI GCATC 1 cut(s) 445
SfcI CTRYAG 1 cut(s) 420
SfoI GGCGCC 1 cut(s) 339
SinI GGWCC 1 cut(s) 183
SmlI CTYRAG 1 cut(s) 359
SmoI CTYRAG 1 cut(s) 359
SphI GCATGC 1 cut(s) 200
Sse9I AATT 6 cut(s) 365, 446, 590, 672, 680, 734
SsiI CCGC 2 cut(s) 200, 341
SspDI GGCGCC 1 cut(s) 337
SspI AATATT 1 cut(s) 808
SspMI CTAG 1 cut(s) 402
SstI GAGCTC 1 cut(s) 63
StyI CCWWGG 1 cut(s) 92
TaaI ACNGT 2 cut(s) 50, 576
TaiI ACGT 3 cut(s) 238, 725, 870
TaqI TCGA 3 cut(s) 24, 648, 696
TasI AATT 6 cut(s) 365, 446, 590, 672, 680, 734
TatI WGTACW 2 cut(s) 382, 627
TauI GCSGC 1 cut(s) 343
TfiI GAWTC 1 cut(s) 21
Tru1I TTAA 3 cut(s) 368, 593, 810
Tru9I TTAA 3 cut(s) 368, 593, 810
TspDTI ATGAA 3 cut(s) 666, 714, 728
TspGWI ACGGA 3 cut(s) 18, 80, 555
VpaK11BI GGWCC 1 cut(s) 183
VspI ATTAAT 2 cut(s) 593, 810
XapI RAATTY 3 cut(s) 672, 680, 734
XceI RCATGY 3 cut(s) 196, 200, 785
XmnI GAANNNNTTC 1 cut(s) 288
XspI CTAG 1 cut(s) 402
Zsp2I ATGCAT 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.