gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Pol_BBD | PF22936 | 1 - 66 | 6.2e-10 | Pol polyprotein, beta-barrel domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 431 |
| AcsI | RAATTY | 3 cut(s) | 98, 392, 425 |
| AfaI | GTAC | 3 cut(s) | 14, 228, 294 |
| AflIII | ACRYGT | 1 cut(s) | 406 |
| AgsI | TTSAA | 2 cut(s) | 490, 572 |
| AhlI | ACTAGT | 1 cut(s) | 202 |
| AjiI | CACGTC | 1 cut(s) | 133 |
| AluBI | AGCT | 2 cut(s) | 40, 365 |
| AluI | AGCT | 2 cut(s) | 40, 365 |
| ApeKI | GCWGC | 2 cut(s) | 37, 136 |
| ApoI | RAATTY | 3 cut(s) | 98, 392, 425 |
| AspS9I | GGNCC | 1 cut(s) | 173 |
| AvaII | GGWCC | 1 cut(s) | 173 |
| BbvI | GCAGC | 2 cut(s) | 49, 123 |
| BccI | CCATC | 3 cut(s) | 131, 266, 542 |
| BcuI | ACTAGT | 1 cut(s) | 202 |
| BfaI | CTAG | 3 cut(s) | 203, 534, 564 |
| BisI | GCNGC | 2 cut(s) | 38, 137 |
| BlsI | GCNGC | 2 cut(s) | 39, 138 |
| Bme18I | GGWCC | 1 cut(s) | 173 |
| BmgBI | CACGTC | 1 cut(s) | 133 |
| BmgT120I | GGNCC | 1 cut(s) | 173 |
| BmsI | GCATC | 2 cut(s) | 71, 359 |
| BseGI | GGATG | 2 cut(s) | 123, 554 |
| BseMII | CTCAG | 1 cut(s) | 507 |
| BseXI | GCAGC | 2 cut(s) | 49, 123 |
| BslFI | GGGAC | 1 cut(s) | 128 |
| BsmFI | GGGAC | 1 cut(s) | 128 |
| BspCNI | CTCAG | 1 cut(s) | 508 |
| Bst6I | CTCTTC | 1 cut(s) | 13 |
| BstDEI | CTNAG | 3 cut(s) | 182, 376, 516 |
| BstEII | GGTNACC | 1 cut(s) | 260 |
| BstF5I | GGATG | 2 cut(s) | 123, 554 |
| BstNSI | RCATGY | 2 cut(s) | 143, 410 |
| BstPI | GGTNACC | 1 cut(s) | 260 |
| BstV1I | GCAGC | 2 cut(s) | 49, 123 |
| BtrI | CACGTC | 1 cut(s) | 133 |
| BtsCI | GGATG | 2 cut(s) | 123, 554 |
| BtsIMutI | CAGTG | 1 cut(s) | 403 |
| Cfr13I | GGNCC | 1 cut(s) | 173 |
| Csp6I | GTAC | 3 cut(s) | 13, 227, 293 |
| CviAII | CATG | 4 cut(s) | 140, 407, 503, 542 |
| CviJI | RGCY | 3 cut(s) | 40, 74, 365 |
| CviKI_1 | RGCY | 3 cut(s) | 40, 74, 365 |
| CviQI | GTAC | 3 cut(s) | 13, 227, 293 |
| DdeI | CTNAG | 3 cut(s) | 182, 376, 516 |
| DraI | TTTAAA | 2 cut(s) | 199, 283 |
| Eam1104I | CTCTTC | 1 cut(s) | 13 |
| EarI | CTCTTC | 1 cut(s) | 13 |
| Eco47I | GGWCC | 1 cut(s) | 173 |
| Eco91I | GGTNACC | 1 cut(s) | 260 |
| EcoO65I | GGTNACC | 1 cut(s) | 260 |
| EcoRI | GAATTC | 1 cut(s) | 392 |
| FaeI | CATG | 4 cut(s) | 143, 410, 506, 545 |
| FaqI | GGGAC | 1 cut(s) | 128 |
| FatI | CATG | 4 cut(s) | 139, 406, 502, 541 |
| Fnu4HI | GCNGC | 2 cut(s) | 38, 137 |
| FokI | GGATG | 2 cut(s) | 110, 541 |
| Fsp4HI | GCNGC | 2 cut(s) | 38, 137 |
| FspBI | CTAG | 3 cut(s) | 203, 534, 564 |
| GluI | GCNGC | 2 cut(s) | 38, 137 |
| Hin1II | CATG | 4 cut(s) | 143, 410, 506, 545 |
| HinfI | GANTC | 3 cut(s) | 160, 212, 372 |
| Hpy188I | TCNGA | 3 cut(s) | 96, 391, 517 |
| Hpy188III | TCNNGA | 2 cut(s) | 108, 564 |
| HpyAV | CCTTC | 1 cut(s) | 250 |
| HpyCH4IV | ACGT | 1 cut(s) | 132 |
| HpyCH4V | TGCA | 4 cut(s) | 62, 139, 350, 437 |
| HpyF3I | CTNAG | 3 cut(s) | 182, 376, 516 |
| HpySE526I | ACGT | 1 cut(s) | 132 |
| Hsp92II | CATG | 4 cut(s) | 143, 410, 506, 545 |
| LpnPI | CCDG | 4 cut(s) | 29, 60, 93, 159 |
| Lsp1109I | GCAGC | 2 cut(s) | 49, 123 |
| LweI | GCATC | 2 cut(s) | 71, 359 |
| MaeI | CTAG | 3 cut(s) | 203, 534, 564 |
| MaeII | ACGT | 1 cut(s) | 132 |
| MaeIII | GTNAC | 1 cut(s) | 260 |
| MboII | GAAGA | 1 cut(s) | 169 |
| MluCI | AATT | 5 cut(s) | 98, 116, 392, 425, 481 |
| MlyI | GAGTC | 1 cut(s) | 221 |
| MnlI | CCTC | 3 cut(s) | 19, 442, 511 |
| MseI | TTAA | 4 cut(s) | 119, 198, 282, 300 |
| MslI | CAYNNNNRTG | 2 cut(s) | 507, 546 |
| MspA1I | CMGCKG | 1 cut(s) | 40 |
| NlaIII | CATG | 4 cut(s) | 143, 410, 506, 545 |
| NspI | RCATGY | 2 cut(s) | 143, 410 |
| PciI | ACATGT | 1 cut(s) | 406 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 30 |
| PfeI | GAWTC | 2 cut(s) | 160, 372 |
| PkrI | GCNGC | 2 cut(s) | 39, 138 |
| PleI | GAGTC | 1 cut(s) | 220 |
| PpsI | GAGTC | 1 cut(s) | 220 |
| PscI | ACATGT | 1 cut(s) | 406 |
| PsiI | TTATAA | 1 cut(s) | 431 |
| PspEI | GGTNACC | 1 cut(s) | 260 |
| PspPI | GGNCC | 1 cut(s) | 173 |
| PvuII | CAGCTG | 1 cut(s) | 40 |
| RsaI | GTAC | 3 cut(s) | 14, 228, 294 |
| RsaNI | GTAC | 3 cut(s) | 13, 227, 293 |
| RseI | CAYNNNNRTG | 2 cut(s) | 507, 546 |
| SaqAI | TTAA | 4 cut(s) | 119, 198, 282, 300 |
| SatI | GCNGC | 2 cut(s) | 38, 137 |
| Sau96I | GGNCC | 1 cut(s) | 173 |
| SchI | GAGTC | 1 cut(s) | 221 |
| SetI | ASST | 6 cut(s) | 42, 135, 267, 367, 522, 535 |
| SfaNI | GCATC | 2 cut(s) | 71, 359 |
| SinI | GGWCC | 1 cut(s) | 173 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 507, 546 |
| SpeI | ACTAGT | 1 cut(s) | 202 |
| Sse9I | AATT | 5 cut(s) | 98, 116, 392, 425, 481 |
| SspMI | CTAG | 3 cut(s) | 203, 534, 564 |
| TaiI | ACGT | 1 cut(s) | 135 |
| TaqI | TCGA | 1 cut(s) | 24 |
| TasI | AATT | 5 cut(s) | 98, 116, 392, 425, 481 |
| TatI | WGTACW | 2 cut(s) | 226, 292 |
| TfiI | GAWTC | 2 cut(s) | 160, 372 |
| Tru1I | TTAA | 4 cut(s) | 119, 198, 282, 300 |
| Tru9I | TTAA | 4 cut(s) | 119, 198, 282, 300 |
| TscAI | CASTG | 1 cut(s) | 403 |
| TseI | GCWGC | 2 cut(s) | 37, 136 |
| TspDTI | ATGAA | 4 cut(s) | 323, 327, 374, 543 |
| TspRI | CASTG | 1 cut(s) | 403 |
| VpaK11BI | GGWCC | 1 cut(s) | 173 |
| XapI | RAATTY | 3 cut(s) | 98, 392, 425 |
| XbaI | TCTAGA | 1 cut(s) | 563 |
| XceI | RCATGY | 2 cut(s) | 143, 410 |
| XspI | CTAG | 3 cut(s) | 203, 534, 564 |