RchiOBHm_Chr7g0222601

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000258
Physical Location & Seq
Forward (+)
44068601 .. 44069161
561 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19925

Sequence Viewer

Length: 399 bp
ATGAATAACCTTAGAGTTGAAGAAAAACAAAGGGTAGACCAAAAGGAAAAACCTGAGAAAACACCCATTGTGAACTTAGTTGTGGGAAACAAAAACCATAACAAGACTAAATTCCACAACAGAAATCGAAGAAGCAATTTTCAGCCTAGGGGGATAAACTTTAAGAACAATAGAGCCAACCATAACAAACAGTTCCAGAAATCTAGGGATCAAGGGAGAGAAAAGATATCTTGCTTTGTTTGTGGGAGGACCAACCATGTAGCAAGGAATTGCTTCTACAAAAGGACTGAGGAGAACAAGTCTCAAGCAAATAGGAATGGTCCAAAAGCTCAAGTGAATATGCTAATGGAGCAAGAGTCCTCTCAACCATTATTCAAAAATCAAGTGGAGGACGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

15.62

Weight (kDa)

10.33

Isoelectric Point (pI)

52.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000258)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00980
fragaria_vesca FvH4_1g25682 FvH4_2g13961 FvH4_2g20162 FvH4_2g24753 FvH4_3g12191 FvH4_3g12632 FvH4_3g16171 FvH4_4g05871 FvH4_4g05873 FvH4_4g10121 FvH4_4g15488 FvH4_4g23911 FvH4_4g27782 FvH4_5g08912 FvH4_5g23001 FvH4_5g24552 FvH4_5g32801 FvH4_5g32802 FvH4_6g05093 FvH4_6g19722 FvH4_6g20391 FvH4_6g33792 FvH4_7g01381 FvH4_7g16761 FvH4_7g16761 FvH4_7g16761
malus_domestica MD01G1082500.v1.1 MD15G1436400.v1.1
prunus_persica Prupe.2G021400_v2.0.a1 Prupe.2G052400_v2.0.a1 Prupe.2G065000_v2.0.a1 Prupe.2G187700_v2.0.a1 Prupe.2G187800_v2.0.a1 Prupe.2G189900_v2.0.a1 Prupe.2G191300_v2.0.a1 Prupe.2G191700_v2.0.a1 Prupe.4G265600_v2.0.a1 Prupe.7G014200_v2.0.a1 Prupe.7G039000_v2.0.a1
pyrus_communis pycom01g05590 pycom01g05910 pycom02g12230 pycom02g25840 pycom03g15580 pycom04g04480 pycom05g09230 pycom05g23350 pycom05g23360 pycom07g08380 pycom09g01980 pycom09g01990 pycom11g18190 pycom11g18200 pycom11g21580 pycom13g04160 pycom15g25800 pycom16g16210 pycom16g17230 pycom16g24560 pycom16g25700 pycom17g11020
rosa_chinensis RchiOBHm_Chr1g0359981 RchiOBHm_Chr2g0151961 RchiOBHm_Chr2g0171331 RchiOBHm_Chr5g0081471 RchiOBHm_Chr6g0283031 RchiOBHm_Chr7g0197111 RchiOBHm_Chr7g0222601
rosa_laevigata RLG00000027843 RLG00000027845 RLG00000030065
rosa_multiflora Rmu_sc0000381.1_g000031 Rmu_sc0001179.1_g000035 Rmu_sc0001616.1_g000046 Rmu_sc0001851.1_g000032 Rmu_sc0002152.1_g000013 Rmu_sc0004031.1_g000015 Rmu_sc0004645.1_g000003 Rmu_sc0007393.1_g000001 Rmu_sc0008949.1_g000003 Rmu_sc0009799.1_g000011 Rmu_sc0011614.1_g000001 Rmu_sc0011699.1_g000009 Rmu_sc0019280.1_g000001 Rmu_sc0023984.1_g000001 Rmu_ssc0000050.1_g000036
rosa_roxburghii Rroxscaffold_1G00022650 Rroxscaffold_1G00033480 Rroxscaffold_3G00270250 Rroxscaffold_4G00296600 Rroxscaffold_4G00296760 Rroxscaffold_6G00409840
rosa_rugosa Rorug01G0273800 Rorug01G0273900 Rorug01G0274000
rosa_samantha Rh1AG287300 Rh1AG288100 Rh1BG253000 Rh1BG253500 Rh1BG399800 Rh1CG270400 Rh1CG271000 Rh1DG282000 Rh1DG282500 Rh4DG126500 Rh5DG194600 Rh5DG461100
rosa_wichuraiana Rw0G009130 Rw1G002590 Rw1G008490 Rw1G012210 Rw1G014290 Rw1G014490 Rw1G025510 Rw2G025840 Rw2G026170 Rw2G036510 Rw3G003050 Rw4G009270 Rw5G002350 Rw5G013930 Rw5G019500 Rw5G025890 Rw5G029960 Rw5G032360 Rw6G009890 Rw6G015670 Rw6G015860 Rw7G010030 Rw7G032600 Rw7G032770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 36
AclWI GGATC 1 cut(s) 216
AcsI RAATTY 1 cut(s) 110
AflIII ACRYGT 1 cut(s) 393
AgsI TTSAA 2 cut(s) 20, 376
AjiI CACGTC 1 cut(s) 394
AluBI AGCT 1 cut(s) 329
AluI AGCT 1 cut(s) 329
Alw26I GTCTC 1 cut(s) 306
AlwI GGATC 1 cut(s) 216
ApoI RAATTY 1 cut(s) 110
Asp700I GAANNNNTTC 1 cut(s) 272
AspA2I CCTAGG 1 cut(s) 146
AspS9I GGNCC 2 cut(s) 249, 320
AvaII GGWCC 2 cut(s) 249, 320
AvrII CCTAGG 1 cut(s) 146
BcoDI GTCTC 1 cut(s) 306
BfaI CTAG 2 cut(s) 147, 204
BlnI CCTAGG 1 cut(s) 146
Bme18I GGWCC 2 cut(s) 249, 320
BmgBI CACGTC 1 cut(s) 394
BmgT120I GGNCC 2 cut(s) 249, 320
BpuEI CTTGAG 2 cut(s) 288, 315
BsaJI CCNNGG 1 cut(s) 146
BsaXI ACNNNNNCTCC 5 cut(s) 284, 314, 341, 371, 380
BseDI CCNNGG 1 cut(s) 146
BseMII CTCAG 2 cut(s) 45, 279
BseRI GAGGAG 1 cut(s) 305
BsmAI GTCTC 1 cut(s) 306
Bsp143I GATC 1 cut(s) 208
BspCNI CTCAG 2 cut(s) 46, 280
BspPI GGATC 1 cut(s) 216
BssECI CCNNGG 1 cut(s) 146
BssMI GATC 1 cut(s) 208
BssT1I CCWWGG 1 cut(s) 146
Bst4CI ACNGT 1 cut(s) 192
BstDEI CTNAG 4 cut(s) 11, 54, 76, 288
BstKTI GATC 1 cut(s) 211
BstMAI GTCTC 1 cut(s) 306
BstMBI GATC 1 cut(s) 208
BstMWI GCNNNNNNNGC 1 cut(s) 349
BtrI CACGTC 1 cut(s) 394
Cfr13I GGNCC 2 cut(s) 249, 320
CviAII CATG 1 cut(s) 257
CviJI RGCY 3 cut(s) 145, 176, 329
CviKI_1 RGCY 3 cut(s) 145, 176, 329
DdeI CTNAG 4 cut(s) 11, 54, 76, 288
DpnI GATC 1 cut(s) 210
DpnII GATC 1 cut(s) 208
Eco130I CCWWGG 1 cut(s) 146
Eco32I GATATC 1 cut(s) 228
Eco47I GGWCC 2 cut(s) 249, 320
EcoRV GATATC 1 cut(s) 228
EcoT14I CCWWGG 1 cut(s) 146
ErhI CCWWGG 1 cut(s) 146
FaeI CATG 1 cut(s) 260
FaiI YATR 4 cut(s) 99, 183, 258, 341
FatI CATG 1 cut(s) 256
FblI GTMKAC 1 cut(s) 36
FspBI CTAG 2 cut(s) 147, 204
Hin1II CATG 1 cut(s) 260
HinfI GANTC 1 cut(s) 356
Hpy166II GTNNAC 2 cut(s) 37, 73
Hpy188III TCNNGA 1 cut(s) 196
Hpy8I GTNNAC 2 cut(s) 37, 73
HpyCH4III ACNGT 1 cut(s) 192
HpyCH4IV ACGT 1 cut(s) 393
HpyF10VI GCNNNNNNNGC 1 cut(s) 349
HpyF3I CTNAG 4 cut(s) 11, 54, 76, 288
HpySE526I ACGT 1 cut(s) 393
Hsp92II CATG 1 cut(s) 260
Kzo9I GATC 1 cut(s) 208
LmnI GCTCC 1 cut(s) 349
LpnPI CCDG 2 cut(s) 66, 209
MaeI CTAG 2 cut(s) 147, 204
MaeII ACGT 1 cut(s) 393
MalI GATC 1 cut(s) 210
MboI GATC 1 cut(s) 208
MboII GAAGA 2 cut(s) 32, 141
MluCI AATT 3 cut(s) 110, 136, 268
MlyI GAGTC 1 cut(s) 365
MnlI CCTC 4 cut(s) 240, 283, 370, 382
MroXI GAANNNNTTC 1 cut(s) 272
MseI TTAA 1 cut(s) 162
MwoI GCNNNNNNNGC 1 cut(s) 349
NdeII GATC 1 cut(s) 208
NlaIII CATG 1 cut(s) 260
PdmI GAANNNNTTC 1 cut(s) 272
PleI GAGTC 1 cut(s) 364
PpsI GAGTC 1 cut(s) 364
PspPI GGNCC 2 cut(s) 249, 320
SaqAI TTAA 1 cut(s) 162
Sau3AI GATC 1 cut(s) 208
Sau96I GGNCC 2 cut(s) 249, 320
SchI GAGTC 1 cut(s) 365
SetI ASST 4 cut(s) 12, 55, 331, 396
SinI GGWCC 2 cut(s) 249, 320
SmlI CTYRAG 2 cut(s) 303, 330
SmoI CTYRAG 2 cut(s) 303, 330
Sse9I AATT 3 cut(s) 110, 136, 268
SspMI CTAG 2 cut(s) 147, 204
StyI CCWWGG 1 cut(s) 146
TaaI ACNGT 1 cut(s) 192
TaiI ACGT 1 cut(s) 396
TaqI TCGA 1 cut(s) 127
TasI AATT 3 cut(s) 110, 136, 268
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 2 cut(s) 249, 320
XapI RAATTY 1 cut(s) 110
XmaJI CCTAGG 1 cut(s) 146
XmiI GTMKAC 1 cut(s) 36
XmnI GAANNNNTTC 1 cut(s) 272
XspI CTAG 2 cut(s) 147, 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.