gag-polypeptide of LTR copia-type
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 209 |
| AccB1I | GGYRCC | 1 cut(s) | 209 |
| AcsI | RAATTY | 4 cut(s) | 165, 218, 393, 444 |
| AcuI | CTGAAG | 1 cut(s) | 488 |
| AfaI | GTAC | 2 cut(s) | 191, 211 |
| AgsI | TTSAA | 6 cut(s) | 152, 232, 314, 412, 418, 510 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 532, 564 |
| AluBI | AGCT | 1 cut(s) | 58 |
| AluI | AGCT | 1 cut(s) | 58 |
| ApoI | RAATTY | 4 cut(s) | 165, 218, 393, 444 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 84, 116 |
| Asp718I | GGTACC | 1 cut(s) | 209 |
| BanI | GGYRCC | 1 cut(s) | 209 |
| BccI | CCATC | 1 cut(s) | 275 |
| BfmI | CTRYAG | 1 cut(s) | 348 |
| BglII | AGATCT | 1 cut(s) | 133 |
| BmiI | GGNNCC | 1 cut(s) | 211 |
| Bsa29I | ATCGAT | 1 cut(s) | 303 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 382, 412 |
| BseCI | ATCGAT | 1 cut(s) | 303 |
| BshNI | GGYRCC | 1 cut(s) | 209 |
| BshVI | ATCGAT | 1 cut(s) | 303 |
| BsmI | GAATGC | 2 cut(s) | 407, 573 |
| Bsp143I | GATC | 4 cut(s) | 103, 133, 300, 304 |
| BspDI | ATCGAT | 1 cut(s) | 303 |
| BspHI | TCATGA | 2 cut(s) | 283, 435 |
| BspLI | GGNNCC | 1 cut(s) | 211 |
| BspT107I | GGYRCC | 1 cut(s) | 209 |
| BssMI | GATC | 4 cut(s) | 103, 133, 300, 304 |
| Bst4CI | ACNGT | 1 cut(s) | 19 |
| Bst6I | CTCTTC | 1 cut(s) | 413 |
| BstDEI | CTNAG | 1 cut(s) | 271 |
| BstKTI | GATC | 4 cut(s) | 106, 136, 303, 307 |
| BstMBI | GATC | 4 cut(s) | 103, 133, 300, 304 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 10, 55 |
| BstSFI | CTRYAG | 1 cut(s) | 348 |
| BstX2I | RGATCY | 1 cut(s) | 133 |
| BstYI | RGATCY | 1 cut(s) | 133 |
| Bsu15I | ATCGAT | 1 cut(s) | 303 |
| BsuTUI | ATCGAT | 1 cut(s) | 303 |
| CciI | TCATGA | 2 cut(s) | 283, 435 |
| ClaI | ATCGAT | 1 cut(s) | 303 |
| Csp6I | GTAC | 2 cut(s) | 190, 210 |
| CviAII | CATG | 6 cut(s) | 10, 116, 284, 338, 369, 436 |
| CviJI | RGCY | 1 cut(s) | 58 |
| CviKI_1 | RGCY | 1 cut(s) | 58 |
| CviQI | GTAC | 2 cut(s) | 190, 210 |
| DdeI | CTNAG | 1 cut(s) | 271 |
| DpnI | GATC | 4 cut(s) | 105, 135, 302, 306 |
| DpnII | GATC | 4 cut(s) | 103, 133, 300, 304 |
| Eam1104I | CTCTTC | 1 cut(s) | 413 |
| EarI | CTCTTC | 1 cut(s) | 413 |
| Eco57I | CTGAAG | 1 cut(s) | 488 |
| FaeI | CATG | 6 cut(s) | 13, 119, 287, 341, 372, 439 |
| FatI | CATG | 6 cut(s) | 9, 115, 283, 337, 368, 435 |
| Hin1II | CATG | 6 cut(s) | 13, 119, 287, 341, 372, 439 |
| HinfI | GANTC | 2 cut(s) | 44, 460 |
| Hpy166II | GTNNAC | 5 cut(s) | 68, 192, 246, 474, 582 |
| Hpy188I | TCNGA | 1 cut(s) | 468 |
| Hpy188III | TCNNGA | 5 cut(s) | 65, 284, 298, 436, 457 |
| Hpy8I | GTNNAC | 5 cut(s) | 68, 192, 246, 474, 582 |
| HpyAV | CCTTC | 1 cut(s) | 478 |
| HpyCH4III | ACNGT | 1 cut(s) | 19 |
| HpyCH4V | TGCA | 3 cut(s) | 143, 451, 571 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 10, 55 |
| HpyF3I | CTNAG | 1 cut(s) | 271 |
| Hsp92II | CATG | 6 cut(s) | 13, 119, 287, 341, 372, 439 |
| KpnI | GGTACC | 1 cut(s) | 213 |
| Kzo9I | GATC | 4 cut(s) | 103, 133, 300, 304 |
| LmnI | GCTCC | 1 cut(s) | 55 |
| LpnPI | CCDG | 1 cut(s) | 192 |
| MaeIII | GTNAC | 1 cut(s) | 74 |
| MalI | GATC | 4 cut(s) | 105, 135, 302, 306 |
| MboI | GATC | 4 cut(s) | 103, 133, 300, 304 |
| MboII | GAAGA | 4 cut(s) | 131, 134, 388, 430 |
| MfeI | CAATTG | 1 cut(s) | 50 |
| MflI | RGATCY | 1 cut(s) | 133 |
| MlyI | GAGTC | 1 cut(s) | 38 |
| MmeI | TCCRAC | 2 cut(s) | 21, 575 |
| MnlI | CCTC | 2 cut(s) | 414, 474 |
| MseI | TTAA | 1 cut(s) | 536 |
| MslI | CAYNNNNRTG | 1 cut(s) | 35 |
| MunI | CAATTG | 1 cut(s) | 50 |
| Mva1269I | GAATGC | 2 cut(s) | 407, 573 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 10, 55 |
| NdeII | GATC | 4 cut(s) | 103, 133, 300, 304 |
| NlaIII | CATG | 6 cut(s) | 13, 119, 287, 341, 372, 439 |
| NlaIV | GGNNCC | 1 cut(s) | 211 |
| NmuCI | GTSAC | 1 cut(s) | 74 |
| PagI | TCATGA | 2 cut(s) | 283, 435 |
| PctI | GAATGC | 2 cut(s) | 407, 573 |
| PfeI | GAWTC | 1 cut(s) | 460 |
| PleI | GAGTC | 1 cut(s) | 38 |
| PpsI | GAGTC | 1 cut(s) | 38 |
| PspN4I | GGNNCC | 1 cut(s) | 211 |
| PsuI | RGATCY | 1 cut(s) | 133 |
| RsaI | GTAC | 2 cut(s) | 191, 211 |
| RsaNI | GTAC | 2 cut(s) | 190, 210 |
| RseI | CAYNNNNRTG | 1 cut(s) | 35 |
| SaqAI | TTAA | 1 cut(s) | 536 |
| Sau3AI | GATC | 4 cut(s) | 103, 133, 300, 304 |
| SchI | GAGTC | 1 cut(s) | 38 |
| SetI | ASST | 3 cut(s) | 60, 181, 211 |
| SfcI | CTRYAG | 1 cut(s) | 348 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 35 |
| SspI | AATATT | 1 cut(s) | 236 |
| TaaI | ACNGT | 1 cut(s) | 19 |
| TaqI | TCGA | 4 cut(s) | 102, 303, 429, 482 |
| TatI | WGTACW | 1 cut(s) | 189 |
| TfiI | GAWTC | 1 cut(s) | 460 |
| Tru1I | TTAA | 1 cut(s) | 536 |
| Tru9I | TTAA | 1 cut(s) | 536 |
| TseFI | GTSAC | 1 cut(s) | 74 |
| Tsp45I | GTSAC | 1 cut(s) | 74 |
| TspDTI | ATGAA | 3 cut(s) | 132, 141, 272 |
| XapI | RAATTY | 4 cut(s) | 165, 218, 393, 444 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 165 |