FvH4_6g20391

receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000258
Physical Location & Seq
Forward (+)
14011869 .. 14012906
1038 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g20391.t1

Sequence Viewer

Length: 510 bp
ATGTTAAATGGAATGGTAGTGGATGTTAAATGGAATGGTTGTGGTGTTATGAAAGACAACCGAGGATCTGAAAAGAAGGCATGGGTCAGTGGCTACTCCACCAAGGCAAATGTTGTGGAACATGGTCAAAGCTCCAAGACCAAAAAGTTCAAAAATCAAGGGTCCAAGCTAGGAACAAGAGGAGGCATTGCCAAGAAGGCAAGGTTTGAAGGCAAGTGCTTCAATTGTGACAAGACTGGTCACAAAGTTGACTGCAACAAGCCAAAGAAGAAGAAGAGCAAGGAAGCCTACATGATTGAAGATGTCACAAGAGATGTCTCTGACATTAACCTCTCTGCTGTGGTCTCAGAGGTGAACATGGTGGGCTCAAACCCAAAGGAGTGGTGGCTCAACATTGGAGCTACTCGCCATGTCTGTGCTGATAAGAAGATGTTCTCCAAATTTGAGCCTACCACTGATGGGGAAACTCAACCACATCTGTCACTGAGGGCAAGGGCAATGTGGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 Malectin_like

Protein Analysis

170

Amino Acids

18.89

Weight (kDa)

9.69

Isoelectric Point (pI)

20.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000258)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00980
fragaria_vesca FvH4_1g25682 FvH4_2g13961 FvH4_2g20162 FvH4_2g24753 FvH4_3g12191 FvH4_3g12632 FvH4_3g16171 FvH4_4g05871 FvH4_4g05873 FvH4_4g10121 FvH4_4g15488 FvH4_4g23911 FvH4_4g27782 FvH4_5g08912 FvH4_5g23001 FvH4_5g24552 FvH4_5g32801 FvH4_5g32802 FvH4_6g05093 FvH4_6g19722 FvH4_6g20391 FvH4_6g33792 FvH4_7g01381 FvH4_7g16761 FvH4_7g16761 FvH4_7g16761
malus_domestica MD01G1082500.v1.1 MD15G1436400.v1.1
prunus_persica Prupe.2G021400_v2.0.a1 Prupe.2G052400_v2.0.a1 Prupe.2G065000_v2.0.a1 Prupe.2G187700_v2.0.a1 Prupe.2G187800_v2.0.a1 Prupe.2G189900_v2.0.a1 Prupe.2G191300_v2.0.a1 Prupe.2G191700_v2.0.a1 Prupe.4G265600_v2.0.a1 Prupe.7G014200_v2.0.a1 Prupe.7G039000_v2.0.a1
pyrus_communis pycom01g05590 pycom01g05910 pycom02g12230 pycom02g25840 pycom03g15580 pycom04g04480 pycom05g09230 pycom05g23350 pycom05g23360 pycom07g08380 pycom09g01980 pycom09g01990 pycom11g18190 pycom11g18200 pycom11g21580 pycom13g04160 pycom15g25800 pycom16g16210 pycom16g17230 pycom16g24560 pycom16g25700 pycom17g11020
rosa_chinensis RchiOBHm_Chr1g0359981 RchiOBHm_Chr2g0151961 RchiOBHm_Chr2g0171331 RchiOBHm_Chr5g0081471 RchiOBHm_Chr6g0283031 RchiOBHm_Chr7g0197111 RchiOBHm_Chr7g0222601
rosa_laevigata RLG00000027843 RLG00000027845 RLG00000030065
rosa_multiflora Rmu_sc0000381.1_g000031 Rmu_sc0001179.1_g000035 Rmu_sc0001616.1_g000046 Rmu_sc0001851.1_g000032 Rmu_sc0002152.1_g000013 Rmu_sc0004031.1_g000015 Rmu_sc0004645.1_g000003 Rmu_sc0007393.1_g000001 Rmu_sc0008949.1_g000003 Rmu_sc0009799.1_g000011 Rmu_sc0011614.1_g000001 Rmu_sc0011699.1_g000009 Rmu_sc0019280.1_g000001 Rmu_sc0023984.1_g000001 Rmu_ssc0000050.1_g000036
rosa_roxburghii Rroxscaffold_1G00022650 Rroxscaffold_1G00033480 Rroxscaffold_3G00270250 Rroxscaffold_4G00296600 Rroxscaffold_4G00296760 Rroxscaffold_6G00409840
rosa_rugosa Rorug01G0273800 Rorug01G0273900 Rorug01G0274000
rosa_samantha Rh1AG287300 Rh1AG288100 Rh1BG253000 Rh1BG253500 Rh1BG399800 Rh1CG270400 Rh1CG271000 Rh1DG282000 Rh1DG282500 Rh4DG126500 Rh5DG194600 Rh5DG461100
rosa_wichuraiana Rw0G009130 Rw1G002590 Rw1G008490 Rw1G012210 Rw1G014290 Rw1G014490 Rw1G025510 Rw2G025840 Rw2G026170 Rw2G036510 Rw3G003050 Rw4G009270 Rw5G002350 Rw5G013930 Rw5G019500 Rw5G025890 Rw5G029960 Rw5G032360 Rw6G009890 Rw6G015670 Rw6G015860 Rw7G010030 Rw7G032600 Rw7G032770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 73
AcsI RAATTY 1 cut(s) 440
AfiI CCNNNNNNNGG 1 cut(s) 459
AgsI TTSAA 4 cut(s) 151, 209, 223, 299
AluBI AGCT 3 cut(s) 132, 169, 401
AluI AGCT 3 cut(s) 132, 169, 401
Alw26I GTCTC 2 cut(s) 322, 349
AlwI GGATC 1 cut(s) 73
ApoI RAATTY 1 cut(s) 440
Asp700I GAANNNNTTC 1 cut(s) 431
AspS9I GGNCC 1 cut(s) 162
AsuHPI GGTGA 1 cut(s) 364
AvaII GGWCC 1 cut(s) 162
BanII GRGCYC 1 cut(s) 368
BccI CCATC 1 cut(s) 452
BcoDI GTCTC 2 cut(s) 322, 349
BfaI CTAG 1 cut(s) 170
BglI GCCNNNNNGGC 1 cut(s) 197
Bme18I GGWCC 1 cut(s) 162
BmgT120I GGNCC 1 cut(s) 162
BmiI GGNNCC 1 cut(s) 163
BsaI GGTCTC 1 cut(s) 349
BsaJI CCNNGG 2 cut(s) 61, 102
Bsc4I CCNNNNNNNGG 1 cut(s) 459
Bse1I ACTGG 1 cut(s) 241
Bse3DI GCAATG 2 cut(s) 186, 504
BseDI CCNNGG 2 cut(s) 61, 102
BseGI GGATG 1 cut(s) 28
BseLI CCNNNNNNNGG 1 cut(s) 459
BseMI GCAATG 2 cut(s) 186, 504
BseMII CTCAG 2 cut(s) 360, 476
BseNI ACTGG 1 cut(s) 241
BseRI GAGGAG 1 cut(s) 195
BslI CCNNNNNNNGG 1 cut(s) 459
BsmAI GTCTC 2 cut(s) 322, 349
Bso31I GGTCTC 1 cut(s) 349
Bsp1286I GDGCHC 1 cut(s) 368
Bsp143I GATC 1 cut(s) 65
BspCNI CTCAG 2 cut(s) 359, 477
BspLI GGNNCC 1 cut(s) 163
BspPI GGATC 1 cut(s) 73
BspQI GCTCTTC 1 cut(s) 269
BspTNI GGTCTC 1 cut(s) 349
BsrDI GCAATG 2 cut(s) 186, 504
BsrI ACTGG 1 cut(s) 241
BssECI CCNNGG 2 cut(s) 61, 102
BssMI GATC 1 cut(s) 65
BssT1I CCWWGG 1 cut(s) 102
Bst6I CTCTTC 1 cut(s) 269
BstDEI CTNAG 2 cut(s) 346, 485
BstF5I GGATG 1 cut(s) 28
BstKTI GATC 1 cut(s) 68
BstMAI GTCTC 2 cut(s) 322, 349
BstMBI GATC 1 cut(s) 65
BstMWI GCNNNNNNNGC 1 cut(s) 197
BstX2I RGATCY 1 cut(s) 65
BstXI CCANNNNNNTGG 1 cut(s) 381
BstYI RGATCY 1 cut(s) 65
BtsCI GGATG 1 cut(s) 28
BtsIMutI CAGTG 3 cut(s) 94, 453, 482
Cfr13I GGNCC 1 cut(s) 162
CspCI CAANNNNNGTGG 2 cut(s) 96, 131
CviAII CATG 5 cut(s) 81, 122, 292, 358, 410
CviJI RGCY 9 cut(s) 93, 132, 169, 262, 287, 366, 388, 401, 448
CviKI_1 RGCY 9 cut(s) 93, 132, 169, 262, 287, 366, 388, 401, 448
DdeI CTNAG 2 cut(s) 346, 485
DpnI GATC 1 cut(s) 67
DpnII GATC 1 cut(s) 65
Eam1104I CTCTTC 1 cut(s) 269
EarI CTCTTC 1 cut(s) 269
Eco130I CCWWGG 1 cut(s) 102
Eco24I GRGCYC 1 cut(s) 368
Eco31I GGTCTC 1 cut(s) 349
Eco47I GGWCC 1 cut(s) 162
EcoT14I CCWWGG 1 cut(s) 102
EcoT38I GRGCYC 1 cut(s) 368
ErhI CCWWGG 1 cut(s) 102
FaeI CATG 5 cut(s) 84, 125, 295, 361, 413
FaiI YATR 6 cut(s) 50, 82, 123, 293, 359, 411
FatI CATG 5 cut(s) 80, 121, 291, 357, 409
FokI GGATG 1 cut(s) 35
FriOI GRGCYC 1 cut(s) 368
FspBI CTAG 1 cut(s) 170
Hin1II CATG 5 cut(s) 84, 125, 295, 361, 413
HincII GTYRAC 1 cut(s) 250
HindII GTYRAC 1 cut(s) 250
HphI GGTGA 1 cut(s) 364
Hpy166II GTNNAC 2 cut(s) 250, 355
Hpy188I TCNGA 4 cut(s) 70, 322, 349, 509
Hpy8I GTNNAC 2 cut(s) 250, 355
HpyAV CCTTC 3 cut(s) 70, 190, 203
HpyCH4V TGCA 1 cut(s) 255
HpyF10VI GCNNNNNNNGC 1 cut(s) 197
HpyF3I CTNAG 2 cut(s) 346, 485
Hsp92II CATG 5 cut(s) 84, 125, 295, 361, 413
Kzo9I GATC 1 cut(s) 65
LguI GCTCTTC 1 cut(s) 269
LmnI GCTCC 2 cut(s) 137, 398
LpnPI CCDG 1 cut(s) 222
MaeI CTAG 1 cut(s) 170
MaeIII GTNAC 4 cut(s) 227, 239, 304, 480
MalI GATC 1 cut(s) 67
MboI GATC 1 cut(s) 65
MboII GAAGA 5 cut(s) 280, 283, 286, 311, 439
MfeI CAATTG 1 cut(s) 223
MflI RGATCY 1 cut(s) 65
MhlI GDGCHC 1 cut(s) 368
MluCI AATT 2 cut(s) 223, 440
MnlI CCTC 6 cut(s) 56, 173, 176, 341, 343, 480
MroXI GAANNNNTTC 1 cut(s) 431
MseI TTAA 3 cut(s) 5, 27, 327
MslI CAYNNNNRTG 1 cut(s) 414
MunI CAATTG 1 cut(s) 223
MwoI GCNNNNNNNGC 1 cut(s) 197
NdeII GATC 1 cut(s) 65
NlaIII CATG 5 cut(s) 84, 125, 295, 361, 413
NlaIV GGNNCC 1 cut(s) 163
NmuCI GTSAC 4 cut(s) 227, 239, 304, 480
PciSI GCTCTTC 1 cut(s) 269
PdmI GAANNNNTTC 1 cut(s) 431
PspN4I GGNNCC 1 cut(s) 163
PspPI GGNCC 1 cut(s) 162
PsuI RGATCY 1 cut(s) 65
RseI CAYNNNNRTG 1 cut(s) 414
SapI GCTCTTC 1 cut(s) 269
SaqAI TTAA 3 cut(s) 5, 27, 327
Sau3AI GATC 1 cut(s) 65
Sau96I GGNCC 1 cut(s) 162
SduI GDGCHC 1 cut(s) 368
SetI ASST 6 cut(s) 134, 171, 206, 333, 354, 403
SinI GGWCC 1 cut(s) 162
SmiMI CAYNNNNRTG 1 cut(s) 414
Sse9I AATT 2 cut(s) 223, 440
SspMI CTAG 1 cut(s) 170
StyI CCWWGG 1 cut(s) 102
TasI AATT 2 cut(s) 223, 440
Tru1I TTAA 3 cut(s) 5, 27, 327
Tru9I TTAA 3 cut(s) 5, 27, 327
TscAI CASTG 3 cut(s) 94, 460, 489
TseFI GTSAC 4 cut(s) 227, 239, 304, 480
Tsp45I GTSAC 4 cut(s) 227, 239, 304, 480
TspDTI ATGAA 1 cut(s) 65
TspRI CASTG 3 cut(s) 94, 460, 489
VpaK11BI GGWCC 1 cut(s) 162
XapI RAATTY 1 cut(s) 440
XcmI CCANNNNNNNNNTGG 1 cut(s) 381
XmnI GAANNNNTTC 1 cut(s) 431
XspI CTAG 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.