Prupe.7G014200_v2.0.a1

Pfam:UBN2_2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0000258
Physical Location & Seq
Forward (+)
2040960 .. 2041823
864 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G014200.1

Sequence Viewer

Length: 678 bp
ATGTTGTTTTACCTTACAACGAAAAAACTAGCTTCTATTTGCACATCTGATAAACCATATGCCTCTGACAATCCCACTCCTGAACAAACTTGGGCCTTGCAGACATGGATTGAAAATGATTTCTTGTGCAAGAACTATATTGAAAAATATGATACAAAAGAGGCTGATGCAAAGAAATTTGCTGTCAGTCGCTATTTGAAGTTTCAAATTATGGATGAAAAATCAGTCGAAGCACAATCCCATGAACTACATAAAATTTTACATGAAATTATTATTGAAGGCATGAATTTAGATGAACAATTTCAGGTGGCTATTATCATTCACAAGTTGCCTCCCAGTTGGAAAGATTTCAAAAATGCTCTACGTCACAAGACCAAAGAATTTTCCTTGGAAAGCTTGATCACTCGTCTGCATATTGAGGAGGAGGCTAGGAAACATGACATGAAAGAAGAAGTTTTGCTCATCTCCAACAACAACAAAAATCACAACTCCAACAGGAATCAAACCACAGCTGCTCTGAAGACAAATGGCAAGAATATGAAAATCAAAACAGGAACCGCAACAACAACAACCAGAATCGAAATGTTTTTATGTTATAACTATCACAAGCCGGGGCACCTTGCCCAAAATTGCAGGAAGAGGTCTCGCCCTGCTCCTCAAGTGAATATAACTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

226

Amino Acids

26.27

Weight (kDa)

9.01

Isoelectric Point (pI)

50.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000258)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00980
fragaria_vesca FvH4_1g25682 FvH4_2g13961 FvH4_2g20162 FvH4_2g24753 FvH4_3g12191 FvH4_3g12632 FvH4_3g16171 FvH4_4g05871 FvH4_4g05873 FvH4_4g10121 FvH4_4g15488 FvH4_4g23911 FvH4_4g27782 FvH4_5g08912 FvH4_5g23001 FvH4_5g24552 FvH4_5g32801 FvH4_5g32802 FvH4_6g05093 FvH4_6g19722 FvH4_6g20391 FvH4_6g33792 FvH4_7g01381 FvH4_7g16761 FvH4_7g16761 FvH4_7g16761
malus_domestica MD01G1082500.v1.1 MD15G1436400.v1.1
prunus_persica Prupe.2G021400_v2.0.a1 Prupe.2G052400_v2.0.a1 Prupe.2G065000_v2.0.a1 Prupe.2G187700_v2.0.a1 Prupe.2G187800_v2.0.a1 Prupe.2G189900_v2.0.a1 Prupe.2G191300_v2.0.a1 Prupe.2G191700_v2.0.a1 Prupe.4G265600_v2.0.a1 Prupe.7G014200_v2.0.a1 Prupe.7G039000_v2.0.a1
pyrus_communis pycom01g05590 pycom01g05910 pycom02g12230 pycom02g25840 pycom03g15580 pycom04g04480 pycom05g09230 pycom05g23350 pycom05g23360 pycom07g08380 pycom09g01980 pycom09g01990 pycom11g18190 pycom11g18200 pycom11g21580 pycom13g04160 pycom15g25800 pycom16g16210 pycom16g17230 pycom16g24560 pycom16g25700 pycom17g11020
rosa_chinensis RchiOBHm_Chr1g0359981 RchiOBHm_Chr2g0151961 RchiOBHm_Chr2g0171331 RchiOBHm_Chr5g0081471 RchiOBHm_Chr6g0283031 RchiOBHm_Chr7g0197111 RchiOBHm_Chr7g0222601
rosa_laevigata RLG00000027843 RLG00000027845 RLG00000030065
rosa_multiflora Rmu_sc0000381.1_g000031 Rmu_sc0001179.1_g000035 Rmu_sc0001616.1_g000046 Rmu_sc0001851.1_g000032 Rmu_sc0002152.1_g000013 Rmu_sc0004031.1_g000015 Rmu_sc0004645.1_g000003 Rmu_sc0007393.1_g000001 Rmu_sc0008949.1_g000003 Rmu_sc0009799.1_g000011 Rmu_sc0011614.1_g000001 Rmu_sc0011699.1_g000009 Rmu_sc0019280.1_g000001 Rmu_sc0023984.1_g000001 Rmu_ssc0000050.1_g000036
rosa_roxburghii Rroxscaffold_1G00022650 Rroxscaffold_1G00033480 Rroxscaffold_3G00270250 Rroxscaffold_4G00296600 Rroxscaffold_4G00296760 Rroxscaffold_6G00409840
rosa_rugosa Rorug01G0273800 Rorug01G0273900 Rorug01G0274000
rosa_samantha Rh1AG287300 Rh1AG288100 Rh1BG253000 Rh1BG253500 Rh1BG399800 Rh1CG270400 Rh1CG271000 Rh1DG282000 Rh1DG282500 Rh4DG126500 Rh5DG194600 Rh5DG461100
rosa_wichuraiana Rw0G009130 Rw1G002590 Rw1G008490 Rw1G012210 Rw1G014290 Rw1G014490 Rw1G025510 Rw2G025840 Rw2G026170 Rw2G036510 Rw3G003050 Rw4G009270 Rw5G002350 Rw5G013930 Rw5G019500 Rw5G025890 Rw5G029960 Rw5G032360 Rw6G009890 Rw6G015670 Rw6G015860 Rw7G010030 Rw7G032600 Rw7G032770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 597
AccB1I GGYRCC 1 cut(s) 615
AciI CCGC 1 cut(s) 558
AcsI RAATTY 4 cut(s) 176, 255, 286, 380
AcuI CTGAAG 1 cut(s) 539
AgsI TTSAA 6 cut(s) 113, 143, 199, 206, 278, 352
AluBI AGCT 3 cut(s) 32, 396, 512
AluI AGCT 3 cut(s) 32, 396, 512
Alw26I GTCTC 1 cut(s) 648
AoxI GGCC 1 cut(s) 93
ApeKI GCWGC 1 cut(s) 512
ApoI RAATTY 4 cut(s) 176, 255, 286, 380
Asp700I GAANNNNTTC 2 cut(s) 300, 347
AspS9I GGNCC 1 cut(s) 93
AsuC2I CCSGG 1 cut(s) 612
BaeGI GKGCMC 1 cut(s) 618
BanI GGYRCC 1 cut(s) 615
BbsI GAAGAC 1 cut(s) 527
BbvI GCAGC 1 cut(s) 499
BclI TGATCA 1 cut(s) 399
BcnI CCSGG 1 cut(s) 612
BcoDI GTCTC 1 cut(s) 648
BfaI CTAG 2 cut(s) 29, 429
BisI GCNGC 1 cut(s) 513
BlsI GCNGC 1 cut(s) 514
Bme1390I CCNGG 1 cut(s) 612
BmgT120I GGNCC 1 cut(s) 93
BmiI GGNNCC 2 cut(s) 556, 617
BmrFI CCNGG 1 cut(s) 612
BmrI ACTGGG 1 cut(s) 330
BmsI GCATC 1 cut(s) 157
BmuI ACTGGG 1 cut(s) 330
BpiI GAAGAC 1 cut(s) 527
BpuEI CTTGAG 1 cut(s) 642
BpuMI CCSGG 1 cut(s) 612
BsaI GGTCTC 1 cut(s) 648
BsaJI CCNNGG 2 cut(s) 387, 611
Bse1I ACTGG 1 cut(s) 336
BseDI CCNNGG 2 cut(s) 387, 611
BseGI GGATG 1 cut(s) 220
BseNI ACTGG 1 cut(s) 336
BseRI GAGGAG 3 cut(s) 434, 437, 645
BseSI GKGCMC 1 cut(s) 618
BseXI GCAGC 1 cut(s) 499
BshFI GGCC 1 cut(s) 95
BshNI GGYRCC 1 cut(s) 615
BsiSI CCGG 1 cut(s) 611
BsmAI GTCTC 1 cut(s) 648
BsnI GGCC 1 cut(s) 95
Bso31I GGTCTC 1 cut(s) 648
Bsp1286I GDGCHC 1 cut(s) 618
Bsp143I GATC 1 cut(s) 399
BspACI CCGC 1 cut(s) 558
BspANI GGCC 1 cut(s) 95
BspLI GGNNCC 2 cut(s) 556, 617
BspT107I GGYRCC 1 cut(s) 615
BspTNI GGTCTC 1 cut(s) 648
BsrI ACTGG 1 cut(s) 336
BssECI CCNNGG 2 cut(s) 387, 611
BssMI GATC 1 cut(s) 399
BssT1I CCWWGG 1 cut(s) 387
Bst6I CTCTTC 1 cut(s) 632
BstF5I GGATG 1 cut(s) 220
BstKTI GATC 1 cut(s) 402
BstMAI GTCTC 1 cut(s) 648
BstMBI GATC 1 cut(s) 399
BstSCI CCNGG 1 cut(s) 610
BstSLI GKGCMC 1 cut(s) 618
BstV1I GCAGC 1 cut(s) 499
BstV2I GAAGAC 1 cut(s) 527
BsuRI GGCC 1 cut(s) 95
BtsCI GGATG 1 cut(s) 220
Cfr13I GGNCC 1 cut(s) 93
CviAII CATG 6 cut(s) 105, 242, 263, 283, 437, 442
CviJI RGCY 8 cut(s) 32, 95, 164, 311, 396, 428, 512, 610
CviKI_1 RGCY 8 cut(s) 32, 95, 164, 311, 396, 428, 512, 610
DpnI GATC 1 cut(s) 401
DpnII GATC 1 cut(s) 399
Eam1104I CTCTTC 1 cut(s) 632
EarI CTCTTC 1 cut(s) 632
Eco130I CCWWGG 1 cut(s) 387
Eco31I GGTCTC 1 cut(s) 648
Eco57I CTGAAG 1 cut(s) 539
EcoT14I CCWWGG 1 cut(s) 387
ErhI CCWWGG 1 cut(s) 387
FaeI CATG 6 cut(s) 108, 245, 266, 286, 440, 445
FatI CATG 6 cut(s) 104, 241, 262, 282, 436, 441
FauNDI CATATG 1 cut(s) 58
FbaI TGATCA 1 cut(s) 399
Fnu4HI GCNGC 1 cut(s) 513
FokI GGATG 1 cut(s) 227
Fsp4HI GCNGC 1 cut(s) 513
FspBI CTAG 2 cut(s) 29, 429
GluI GCNGC 1 cut(s) 513
HaeIII GGCC 1 cut(s) 95
HapII CCGG 1 cut(s) 611
Hin1II CATG 6 cut(s) 108, 245, 266, 286, 440, 445
HindIII AAGCTT 1 cut(s) 394
HinfI GANTC 2 cut(s) 499, 576
HpaII CCGG 1 cut(s) 611
Hpy188I TCNGA 3 cut(s) 49, 67, 519
Hpy188III TCNNGA 1 cut(s) 80
HpyAV CCTTC 1 cut(s) 272
HpyCH4IV ACGT 1 cut(s) 364
HpyCH4V TGCA 6 cut(s) 42, 100, 129, 170, 412, 633
HpySE526I ACGT 1 cut(s) 364
Hsp92II CATG 6 cut(s) 108, 245, 266, 286, 440, 445
Ksp22I TGATCA 1 cut(s) 399
Kzo9I GATC 1 cut(s) 399
LmnI GCTCC 1 cut(s) 658
LpnPI CCDG 9 cut(s) 93, 290, 349, 481, 537, 586, 619, 624, 663
Lsp1109I GCAGC 1 cut(s) 499
LweI GCATC 1 cut(s) 157
MaeI CTAG 2 cut(s) 29, 429
MaeII ACGT 1 cut(s) 364
MaeIII GTNAC 1 cut(s) 365
MalI GATC 1 cut(s) 401
MboI GATC 1 cut(s) 399
MboII GAAGA 3 cut(s) 461, 532, 649
MhlI GDGCHC 1 cut(s) 618
MluCI AATT 8 cut(s) 176, 207, 255, 267, 286, 299, 380, 628
MmeI TCCRAC 3 cut(s) 320, 492, 516
MnlI CCTC 8 cut(s) 73, 154, 342, 412, 415, 418, 633, 666
MroXI GAANNNNTTC 2 cut(s) 300, 347
MspA1I CMGCKG 1 cut(s) 512
MspI CCGG 1 cut(s) 611
MspR9I CCNGG 1 cut(s) 612
NciI CCSGG 1 cut(s) 612
NdeI CATATG 1 cut(s) 58
NdeII GATC 1 cut(s) 399
NlaIII CATG 6 cut(s) 108, 245, 266, 286, 440, 445
NlaIV GGNNCC 2 cut(s) 556, 617
NmuCI GTSAC 1 cut(s) 365
PdmI GAANNNNTTC 2 cut(s) 300, 347
PfeI GAWTC 2 cut(s) 499, 576
PkrI GCNGC 1 cut(s) 514
PsiI TTATAA 1 cut(s) 597
PspN4I GGNNCC 2 cut(s) 556, 617
PspPI GGNCC 1 cut(s) 93
PvuII CAGCTG 1 cut(s) 512
SatI GCNGC 1 cut(s) 513
Sau3AI GATC 1 cut(s) 399
Sau96I GGNCC 1 cut(s) 93
ScrFI CCNGG 1 cut(s) 612
SduI GDGCHC 1 cut(s) 618
SetI ASST 8 cut(s) 15, 34, 309, 367, 398, 514, 621, 644
SfaNI GCATC 1 cut(s) 157
SmlI CTYRAG 1 cut(s) 657
SmoI CTYRAG 1 cut(s) 657
Sse9I AATT 8 cut(s) 176, 207, 255, 267, 286, 299, 380, 628
SsiI CCGC 1 cut(s) 558
SspMI CTAG 2 cut(s) 29, 429
StyD4I CCNGG 1 cut(s) 610
StyI CCWWGG 1 cut(s) 387
TaiI ACGT 1 cut(s) 367
TaqI TCGA 2 cut(s) 228, 579
TasI AATT 8 cut(s) 176, 207, 255, 267, 286, 299, 380, 628
TfiI GAWTC 2 cut(s) 499, 576
TseFI GTSAC 1 cut(s) 365
TseI GCWGC 1 cut(s) 512
Tsp45I GTSAC 1 cut(s) 365
TspDTI ATGAA 7 cut(s) 231, 258, 279, 299, 309, 458, 554
XapI RAATTY 4 cut(s) 176, 255, 286, 380
XmnI GAANNNNTTC 2 cut(s) 300, 347
XspI CTAG 2 cut(s) 29, 429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.